RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 NISCHQ9Y2I1 1504 aa36.32■■■■□ 3.4
LIMS4-201ENST00000413601 CCDC180Q9P1Z9 1646 aa32.4■■■□□ 2.78
LIMS4-201ENST00000413601 ABCC9O60706 1549 aa31.85■■■□□ 2.69
LIMS4-201ENST00000413601 RB1CC1Q8TDY2 1594 aa30.56■■■□□ 2.48
LIMS4-201ENST00000413601 NACADO15069 1562 aa30.46■■■□□ 2.47
LIMS4-201ENST00000413601 DCAF8L2P0C7V8 631 aa30.44■■■□□ 2.46
LIMS4-201ENST00000413601 ZCCHC6Q5VYS8 1495 aaKnown RBP30.2■■■□□ 2.43
LIMS4-201ENST00000413601 MYO15BQ96JP2 1530 aa30.18■■■□□ 2.42
LIMS4-201ENST00000413601 UNC13AQ9UPW8 1703 aa30■■■□□ 2.39
LIMS4-201ENST00000413601 DCAF1Q9Y4B6 1507 aa30■■■□□ 2.39
LIMS4-201ENST00000413601 PABPN1Q86U42 306 aaKnown RBP eCLIP29.73■■■□□ 2.35
LIMS4-201ENST00000413601 BICRAQ9NZM4 1560 aa29.67■■■□□ 2.34
LIMS4-201ENST00000413601 SCRIBQ14160 1630 aa29.57■■■□□ 2.32
LIMS4-201ENST00000413601 DNAJC5BQ9UF47 199 aa29.39■■■□□ 2.3
LIMS4-201ENST00000413601 SHROOM4Q9ULL8 1493 aa29.23■■■□□ 2.27
LIMS4-201ENST00000413601 EIF4G1Q04637 1599 aaKnown RBP28.88■■■□□ 2.21
LIMS4-201ENST00000413601 CC2D2AQ9P2K1 1620 aa28.83■■■□□ 2.21
LIMS4-201ENST00000413601 CECR2Q9BXF3 1484 aa28.61■■■□□ 2.17
LIMS4-201ENST00000413601 SMARCA4P51532 1647 aa28.25■■■□□ 2.11
LIMS4-201ENST00000413601 BAZ1AQ9NRL2 1556 aaPredicted RBP28.16■■■□□ 2.1
LIMS4-201ENST00000413601 ATAD2BQ9ULI0 1458 aa28.09■■■□□ 2.09
LIMS4-201ENST00000413601 NCAPD3P42695 1498 aa28.08■■■□□ 2.09
LIMS4-201ENST00000413601 SMARCA2P51531 1590 aa28.06■■■□□ 2.08
LIMS4-201ENST00000413601 MROH2BQ7Z745 1585 aa28.01■■■□□ 2.07
LIMS4-201ENST00000413601 HMGXB3Q12766 1538 aa27.95■■■□□ 2.06
LIMS4-201ENST00000413601 PEG3Q9GZU2 1588 aa27.94■■■□□ 2.06
LIMS4-201ENST00000413601 BAZ1BQ9UIG0 1483 aaKnown RBP27.87■■■□□ 2.05
LIMS4-201ENST00000413601 WIZO95785 1651 aa27.75■■■□□ 2.03
LIMS4-201ENST00000413601 RSF1Q96T23 1441 aaPredicted RBP27.59■■■□□ 2.01
LIMS4-201ENST00000413601 NESP48681 1621 aa27.53■■■□□ 2
LIMS4-201ENST00000413601 ERCC6Q03468 1493 aa27.45■■□□□ 1.99
LIMS4-201ENST00000413601 LAMC3Q9Y6N6 1575 aa27.41■■□□□ 1.98
LIMS4-201ENST00000413601 TOP2AP11388 1531 aaKnown RBP27.37■■□□□ 1.97
LIMS4-201ENST00000413601 KIF21AQ7Z4S6 1674 aa27.27■■□□□ 1.96
LIMS4-201ENST00000413601 CADPSQ9ULU8 1353 aa27.25■■□□□ 1.95
LIMS4-201ENST00000413601 CUX2O14529 1486 aa27.19■■□□□ 1.94
LIMS4-201ENST00000413601 PDS5BQ9NTI5 1447 aa27.19■■□□□ 1.94
LIMS4-201ENST00000413601 THOC2Q8NI27 1593 aaKnown RBP27.15■■□□□ 1.94
LIMS4-201ENST00000413601 CFTRP13569 1480 aa27.07■■□□□ 1.92
LIMS4-201ENST00000413601 CCDC88BA6NC98 1476 aa27.06■■□□□ 1.92
LIMS4-201ENST00000413601 PRDM2Q13029 1718 aa26.99■■□□□ 1.91
LIMS4-201ENST00000413601 FANCD2Q9BXW9 1451 aa26.97■■□□□ 1.91
LIMS4-201ENST00000413601 CEP164Q9UPV0 1460 aa26.95■■□□□ 1.91
LIMS4-201ENST00000413601 MRC2Q9UBG0 1479 aa26.94■■□□□ 1.9
LIMS4-201ENST00000413601 WDR62O43379 1518 aa26.87■■□□□ 1.89
LIMS4-201ENST00000413601 AEBP2Q6ZN18 517 aaPredicted RBP26.81■■□□□ 1.88
LIMS4-201ENST00000413601 SUPT5HO00267 1087 aaKnown RBP26.8■■□□□ 1.88
LIMS4-201ENST00000413601 URB2Q14146 1524 aaKnown RBP26.73■■□□□ 1.87
LIMS4-201ENST00000413601 DNAJC5Q9H3Z4 198 aa26.57■■□□□ 1.84
LIMS4-201ENST00000413601 TOPBP1Q92547 1522 aa26.54■■□□□ 1.84
LIMS4-201ENST00000413601 DNMBPQ6XZF7 1577 aa26.5■■□□□ 1.83
LIMS4-201ENST00000413601 ABCC8Q09428 1581 aa26.49■■□□□ 1.83
LIMS4-201ENST00000413601 IFT140Q96RY7 1462 aa26.37■■□□□ 1.81
LIMS4-201ENST00000413601 ZNF608Q9ULD9 1512 aaPredicted RBP26.31■■□□□ 1.8
LIMS4-201ENST00000413601 POLA1P09884 1462 aaPredicted RBP26.29■■□□□ 1.8
LIMS4-201ENST00000413601 CUX1P39880 1505 aa26.29■■□□□ 1.8
LIMS4-201ENST00000413601 TARBP1Q13395 1621 aaKnown RBP26.28■■□□□ 1.8
LIMS4-201ENST00000413601 EIF4G3O43432 1585 aaKnown RBP26.23■■□□□ 1.79
LIMS4-201ENST00000413601 FGD5Q6ZNL6 1462 aa26.21■■□□□ 1.79
LIMS4-201ENST00000413601 RAD54L2Q9Y4B4 1467 aa26.2■■□□□ 1.78
LIMS4-201ENST00000413601 SOGA1O94964 1423 aa26.17■■□□□ 1.78
LIMS4-201ENST00000413601 AQRO60306 1485 aaKnown RBP eCLIP26.14■■□□□ 1.78
LIMS4-201ENST00000413601 WDR97A6NE52 1622 aa26.06■■□□□ 1.76
LIMS4-201ENST00000413601 TDRD9Q8NDG6 1382 aaKnown RBP26.06■■□□□ 1.76
LIMS4-201ENST00000413601 OSCARQ8IYS5 282 aa26.05■■□□□ 1.76
LIMS4-201ENST00000413601 BIVM-ERCC5R4GMW8 1640 aa26.04■■□□□ 1.76
LIMS4-201ENST00000413601 WRNQ14191 1432 aaPredicted RBP eCLIP26.02■■□□□ 1.76
LIMS4-201ENST00000413601 SYNJ1O43426 1573 aa26.02■■□□□ 1.76
LIMS4-201ENST00000413601 TOP2BQ02880 1626 aa26.02■■□□□ 1.76
LIMS4-201ENST00000413601 CHD1O14646 1710 aa26■■□□□ 1.75
LIMS4-201ENST00000413601 ABCA10Q8WWZ4 1543 aa25.93■■□□□ 1.74
LIMS4-201ENST00000413601 PBRM1Q86U86 1689 aa25.93■■□□□ 1.74
LIMS4-201ENST00000413601 SNAPC4Q5SXM2 1469 aa25.89■■□□□ 1.73
LIMS4-201ENST00000413601 ABCA5Q8WWZ7 1642 aa25.88■■□□□ 1.73
LIMS4-201ENST00000413601 GRIN2BQ13224 1484 aa25.88■■□□□ 1.73
LIMS4-201ENST00000413601 GAPVD1Q14C86 1478 aa25.87■■□□□ 1.73
LIMS4-201ENST00000413601 FBLN2P98095 1184 aa25.87■■□□□ 1.73
LIMS4-201ENST00000413601 MAGI1Q96QZ7 1491 aaPredicted RBP25.83■■□□□ 1.73
LIMS4-201ENST00000413601 CHMP7Q8WUX9 453 aaPredicted RBP25.74■■□□□ 1.71
LIMS4-201ENST00000413601 SYNJ2O15056 1496 aa25.73■■□□□ 1.71
LIMS4-201ENST00000413601 RIMBP3CA6NJZ7 1639 aa25.72■■□□□ 1.71
LIMS4-201ENST00000413601 RIMBP3BA6NNM3 1639 aa25.72■■□□□ 1.71
LIMS4-201ENST00000413601 RIMBP3Q9UFD9 1639 aa25.72■■□□□ 1.71
LIMS4-201ENST00000413601 TRIM41Q8WV44 630 aa25.67■■□□□ 1.7
LIMS4-201ENST00000413601 ARHGEF11O15085 1522 aa25.65■■□□□ 1.7
LIMS4-201ENST00000413601 ADAMTS12P58397 1594 aa25.64■■□□□ 1.69
LIMS4-201ENST00000413601 ERICH3Q5RHP9 1530 aa25.62■■□□□ 1.69
LIMS4-201ENST00000413601 CLASP1Q7Z460 1538 aa25.62■■□□□ 1.69
LIMS4-201ENST00000413601 GRIN2AQ12879 1464 aa25.55■■□□□ 1.68
LIMS4-201ENST00000413601 FHAD1B1AJZ9 1412 aa25.54■■□□□ 1.68
LIMS4-201ENST00000413601 KIF27Q86VH2 1401 aa25.47■■□□□ 1.67
LIMS4-201ENST00000413601 CEP170Q5SW79 1584 aa25.47■■□□□ 1.67
LIMS4-201ENST00000413601 ARAP1Q96P48 1450 aa25.43■■□□□ 1.66
LIMS4-201ENST00000413601 NUP160Q12769 1436 aa25.43■■□□□ 1.66
LIMS4-201ENST00000413601 CYB5RLQ6IPT4 315 aa25.42■■□□□ 1.66
LIMS4-201ENST00000413601 IGF1RP08069 1367 aa25.4■■□□□ 1.66
LIMS4-201ENST00000413601 CUL7Q14999 1698 aa25.39■■□□□ 1.66
LIMS4-201ENST00000413601 SHROOM2Q13796 1616 aa25.31■■□□□ 1.64
LIMS4-201ENST00000413601 ERCC6L2Q5T890 1561 aa25.29■■□□□ 1.64
LIMS4-201ENST00000413601 RUSC2Q8N2Y8 1516 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms