RNA–Protein interactions for RNA: ENST00000413517.1

HERPUD2-203, Transcript of HERPUD family member 2, humanhuman

TSL 5

Gene HERPUD2, Length 808 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-203ENST00000413517 NISCHQ9Y2I1 1504 aa21.16■□□□□ 0.98
HERPUD2-203ENST00000413517 CHIC1Q5VXU3 224 aa19.7■□□□□ 0.74
HERPUD2-203ENST00000413517 AEBP2Q6ZN18 517 aaPredicted RBP19.32■□□□□ 0.68
HERPUD2-203ENST00000413517 CCDC180Q9P1Z9 1646 aa18.9■□□□□ 0.62
HERPUD2-203ENST00000413517 ABCC9O60706 1549 aa18.58■□□□□ 0.56
HERPUD2-203ENST00000413517 RB1CC1Q8TDY2 1594 aa17.79■□□□□ 0.44
HERPUD2-203ENST00000413517 NACADO15069 1562 aa17.73■□□□□ 0.43
HERPUD2-203ENST00000413517 ZCCHC6Q5VYS8 1495 aaKnown RBP17.63■□□□□ 0.41
HERPUD2-203ENST00000413517 DCAF8L2P0C7V8 631 aa17.61■□□□□ 0.41
HERPUD2-203ENST00000413517 MYO15BQ96JP2 1530 aa17.58■□□□□ 0.41
HERPUD2-203ENST00000413517 UNC13AQ9UPW8 1703 aa17.56■□□□□ 0.4
HERPUD2-203ENST00000413517 DCAF1Q9Y4B6 1507 aa17.48■□□□□ 0.39
HERPUD2-203ENST00000413517 PHF23Q9BUL5 403 aaPredicted RBP17.41■□□□□ 0.38
HERPUD2-203ENST00000413517 BICRAQ9NZM4 1560 aa17.36■□□□□ 0.37
HERPUD2-203ENST00000413517 PABPN1Q86U42 306 aaKnown RBP eCLIP17.3■□□□□ 0.36
HERPUD2-203ENST00000413517 SCRIBQ14160 1630 aa17.25■□□□□ 0.35
HERPUD2-203ENST00000413517 DNAJC5BQ9UF47 199 aa17.18■□□□□ 0.34
HERPUD2-203ENST00000413517 SHROOM4Q9ULL8 1493 aa17.03■□□□□ 0.32
HERPUD2-203ENST00000413517 EIF4G1Q04637 1599 aaKnown RBP16.85■□□□□ 0.29
HERPUD2-203ENST00000413517 CC2D2AQ9P2K1 1620 aa16.82■□□□□ 0.28
HERPUD2-203ENST00000413517 CECR2Q9BXF3 1484 aa16.67■□□□□ 0.26
HERPUD2-203ENST00000413517 SMARCA4P51532 1647 aa16.48■□□□□ 0.23
HERPUD2-203ENST00000413517 PLPPR3Q6T4P5 718 aa16.47■□□□□ 0.23
HERPUD2-203ENST00000413517 SENP3Q9H4L4 574 aaPredicted RBP16.43■□□□□ 0.22
HERPUD2-203ENST00000413517 BAZ1AQ9NRL2 1556 aaPredicted RBP16.38■□□□□ 0.21
HERPUD2-203ENST00000413517 ATAD2BQ9ULI0 1458 aa16.37■□□□□ 0.21
HERPUD2-203ENST00000413517 NCAPD3P42695 1498 aa16.36■□□□□ 0.21
HERPUD2-203ENST00000413517 MROH2BQ7Z745 1585 aa16.34■□□□□ 0.21
HERPUD2-203ENST00000413517 SMARCA2P51531 1590 aa16.33■□□□□ 0.2
HERPUD2-203ENST00000413517 PEG3Q9GZU2 1588 aa16.3■□□□□ 0.2
HERPUD2-203ENST00000413517 HMGXB3Q12766 1538 aa16.3■□□□□ 0.2
HERPUD2-203ENST00000413517 BAZ1BQ9UIG0 1483 aaKnown RBP16.22■□□□□ 0.19
HERPUD2-203ENST00000413517 WIZO95785 1651 aa16.19■□□□□ 0.18
HERPUD2-203ENST00000413517 NESP48681 1621 aa16.08■□□□□ 0.16
HERPUD2-203ENST00000413517 RSF1Q96T23 1441 aaPredicted RBP16.07■□□□□ 0.16
HERPUD2-203ENST00000413517 LAMC3Q9Y6N6 1575 aa15.96■□□□□ 0.15
HERPUD2-203ENST00000413517 TOP2AP11388 1531 aaKnown RBP15.96■□□□□ 0.15
HERPUD2-203ENST00000413517 ERCC6Q03468 1493 aa15.95■□□□□ 0.14
HERPUD2-203ENST00000413517 KIF21AQ7Z4S6 1674 aa15.93■□□□□ 0.14
HERPUD2-203ENST00000413517 THOC2Q8NI27 1593 aaKnown RBP15.88■□□□□ 0.13
HERPUD2-203ENST00000413517 CADPSQ9ULU8 1353 aa15.86■□□□□ 0.13
HERPUD2-203ENST00000413517 CUX2O14529 1486 aa15.84■□□□□ 0.13
HERPUD2-203ENST00000413517 PDS5BQ9NTI5 1447 aa15.79■□□□□ 0.12
HERPUD2-203ENST00000413517 CFTRP13569 1480 aa15.77■□□□□ 0.11
HERPUD2-203ENST00000413517 PRDM2Q13029 1718 aa15.76■□□□□ 0.11
HERPUD2-203ENST00000413517 CCDC88BA6NC98 1476 aa15.76■□□□□ 0.11
HERPUD2-203ENST00000413517 EHMT2Q96KQ7 1210 aa15.71■□□□□ 0.11
HERPUD2-203ENST00000413517 FANCD2Q9BXW9 1451 aa15.71■□□□□ 0.1
HERPUD2-203ENST00000413517 MRC2Q9UBG0 1479 aa15.7■□□□□ 0.1
HERPUD2-203ENST00000413517 CEP164Q9UPV0 1460 aa15.69■□□□□ 0.1
HERPUD2-203ENST00000413517 WDR62O43379 1518 aa15.68■□□□□ 0.1
HERPUD2-203ENST00000413517 URB2Q14146 1524 aaKnown RBP15.61■□□□□ 0.09
HERPUD2-203ENST00000413517 SUPT5HO00267 1087 aaKnown RBP15.52■□□□□ 0.08
HERPUD2-203ENST00000413517 KCNA4P22459 653 aa15.47■□□□□ 0.07
HERPUD2-203ENST00000413517 DNAJC5Q9H3Z4 198 aa15.47■□□□□ 0.07
HERPUD2-203ENST00000413517 TOPBP1Q92547 1522 aa15.47■□□□□ 0.07
HERPUD2-203ENST00000413517 DNMBPQ6XZF7 1577 aa15.44■□□□□ 0.06
HERPUD2-203ENST00000413517 ABCC8Q09428 1581 aa15.37■□□□□ 0.05
HERPUD2-203ENST00000413517 ZNF608Q9ULD9 1512 aaPredicted RBP15.36■□□□□ 0.05
HERPUD2-203ENST00000413517 TARBP1Q13395 1621 aaKnown RBP15.35■□□□□ 0.05
HERPUD2-203ENST00000413517 IFT140Q96RY7 1462 aa15.35■□□□□ 0.05
HERPUD2-203ENST00000413517 ADRA2BP18089 450 aa15.35■□□□□ 0.05
HERPUD2-203ENST00000413517 CUX1P39880 1505 aa15.33■□□□□ 0.05
HERPUD2-203ENST00000413517 POLA1P09884 1462 aaPredicted RBP15.33■□□□□ 0.04
HERPUD2-203ENST00000413517 FOXD1Q16676 465 aa15.31■□□□□ 0.04
HERPUD2-203ENST00000413517 EIF4G3O43432 1585 aaKnown RBP15.31■□□□□ 0.04
HERPUD2-203ENST00000413517 FGD5Q6ZNL6 1462 aa15.27■□□□□ 0.04
HERPUD2-203ENST00000413517 RAD54L2Q9Y4B4 1467 aa15.27■□□□□ 0.03
HERPUD2-203ENST00000413517 WDR97A6NE52 1622 aa15.24■□□□□ 0.03
HERPUD2-203ENST00000413517 AQRO60306 1485 aaKnown RBP eCLIP15.22■□□□□ 0.03
HERPUD2-203ENST00000413517 SOGA1O94964 1423 aa15.2■□□□□ 0.02
HERPUD2-203ENST00000413517 BIVM-ERCC5R4GMW8 1640 aa15.19■□□□□ 0.02
HERPUD2-203ENST00000413517 CHD1O14646 1710 aa15.19■□□□□ 0.02
HERPUD2-203ENST00000413517 SYNJ1O43426 1573 aa15.19■□□□□ 0.02
HERPUD2-203ENST00000413517 TDRD9Q8NDG6 1382 aaKnown RBP15.16■□□□□ 0.02
HERPUD2-203ENST00000413517 TOP2BQ02880 1626 aa15.16■□□□□ 0.02
HERPUD2-203ENST00000413517 WRNQ14191 1432 aaPredicted RBP eCLIP15.13■□□□□ 0.01
HERPUD2-203ENST00000413517 PBRM1Q86U86 1689 aa15.12■□□□□ 0.01
HERPUD2-203ENST00000413517 ABCA5Q8WWZ7 1642 aa15.11■□□□□ 0.01
HERPUD2-203ENST00000413517 ABCA10Q8WWZ4 1543 aa15.11■□□□□ 0.01
HERPUD2-203ENST00000413517 OSCARQ8IYS5 282 aa15.1■□□□□ 0.01
HERPUD2-203ENST00000413517 SNAPC4Q5SXM2 1469 aa15.08■□□□□ 0.01
HERPUD2-203ENST00000413517 GRIN2BQ13224 1484 aa15.05■□□□□ -0
HERPUD2-203ENST00000413517 GAPVD1Q14C86 1478 aa15.05■□□□□ -0
HERPUD2-203ENST00000413517 MAGI1Q96QZ7 1491 aaPredicted RBP15.03■□□□□ -0
HERPUD2-203ENST00000413517 CSRNP3Q8WYN3 585 aa15.02■□□□□ -0
HERPUD2-203ENST00000413517 RIMBP3CA6NJZ7 1639 aa15.02□□□□□ -0.01
HERPUD2-203ENST00000413517 RIMBP3BA6NNM3 1639 aa15.02□□□□□ -0.01
HERPUD2-203ENST00000413517 RIMBP3Q9UFD9 1639 aa15.02□□□□□ -0.01
HERPUD2-203ENST00000413517 PPP6R1Q9UPN7 881 aa15.01□□□□□ -0.01
HERPUD2-203ENST00000413517 FBLN2P98095 1184 aa14.98□□□□□ -0.01
HERPUD2-203ENST00000413517 SYNJ2O15056 1496 aa14.97□□□□□ -0.01
HERPUD2-203ENST00000413517 ADAMTS12P58397 1594 aa14.97□□□□□ -0.01
HERPUD2-203ENST00000413517 ARHGEF11O15085 1522 aa14.97□□□□□ -0.01
HERPUD2-203ENST00000413517 CLASP1Q7Z460 1538 aa14.97□□□□□ -0.01
HERPUD2-203ENST00000413517 SLC4A1APQ9BWU0 796 aaKnown RBP14.93□□□□□ -0.02
HERPUD2-203ENST00000413517 ERICH3Q5RHP9 1530 aa14.92□□□□□ -0.02
HERPUD2-203ENST00000413517 CHMP7Q8WUX9 453 aaPredicted RBP14.91□□□□□ -0.02
HERPUD2-203ENST00000413517 TRIM41Q8WV44 630 aa14.91□□□□□ -0.02
HERPUD2-203ENST00000413517 GRIN2AQ12879 1464 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms