RNA–Protein interactions for RNA: ENST00000413354.5

MCF2L-211, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-211ENST00000413354 NISCHQ9Y2I1 1504 aa38.58■■■■□ 3.77
MCF2L-211ENST00000413354 CCDC180Q9P1Z9 1646 aa34.52■■■■□ 3.12
MCF2L-211ENST00000413354 ABCC9O60706 1549 aa33.87■■■■□ 3.01
MCF2L-211ENST00000413354 RB1CC1Q8TDY2 1594 aa32.58■■■□□ 2.81
MCF2L-211ENST00000413354 NACADO15069 1562 aa32.47■■■□□ 2.79
MCF2L-211ENST00000413354 DCAF8L2P0C7V8 631 aa32.23■■■□□ 2.75
MCF2L-211ENST00000413354 MYO15BQ96JP2 1530 aa32.21■■■□□ 2.75
MCF2L-211ENST00000413354 ZCCHC6Q5VYS8 1495 aaKnown RBP32.1■■■□□ 2.73
MCF2L-211ENST00000413354 DCAF1Q9Y4B6 1507 aa31.95■■■□□ 2.71
MCF2L-211ENST00000413354 UNC13AQ9UPW8 1703 aa31.84■■■□□ 2.69
MCF2L-211ENST00000413354 PABPN1Q86U42 306 aaKnown RBP eCLIP31.54■■■□□ 2.642e-6■■■□□ 18.6
MCF2L-211ENST00000413354 BICRAQ9NZM4 1560 aa31.52■■■□□ 2.64
MCF2L-211ENST00000413354 SCRIBQ14160 1630 aa31.39■■■□□ 2.62
MCF2L-211ENST00000413354 SHROOM4Q9ULL8 1493 aa31.29■■■□□ 2.6
MCF2L-211ENST00000413354 DNAJC5BQ9UF47 199 aa31.2■■■□□ 2.59
MCF2L-211ENST00000413354 EIF4G1Q04637 1599 aaKnown RBP30.75■■■□□ 2.51
MCF2L-211ENST00000413354 CC2D2AQ9P2K1 1620 aa30.68■■■□□ 2.5
MCF2L-211ENST00000413354 CECR2Q9BXF3 1484 aa30.5■■■□□ 2.47
MCF2L-211ENST00000413354 SMARCA4P51532 1647 aa30.03■■■□□ 2.4
MCF2L-211ENST00000413354 BAZ1AQ9NRL2 1556 aaPredicted RBP29.96■■■□□ 2.39
MCF2L-211ENST00000413354 SMARCA2P51531 1590 aa29.9■■■□□ 2.38
MCF2L-211ENST00000413354 NCAPD3P42695 1498 aa29.9■■■□□ 2.38
MCF2L-211ENST00000413354 ATAD2BQ9ULI0 1458 aa29.87■■■□□ 2.37
MCF2L-211ENST00000413354 HMGXB3Q12766 1538 aa29.8■■■□□ 2.36
MCF2L-211ENST00000413354 PEG3Q9GZU2 1588 aa29.74■■■□□ 2.35
MCF2L-211ENST00000413354 MROH2BQ7Z745 1585 aa29.69■■■□□ 2.34
MCF2L-211ENST00000413354 BAZ1BQ9UIG0 1483 aaKnown RBP29.65■■■□□ 2.34
MCF2L-211ENST00000413354 WIZO95785 1651 aa29.38■■■□□ 2.29
MCF2L-211ENST00000413354 ERCC6Q03468 1493 aa29.28■■■□□ 2.28
MCF2L-211ENST00000413354 RSF1Q96T23 1441 aaPredicted RBP29.25■■■□□ 2.27
MCF2L-211ENST00000413354 LAMC3Q9Y6N6 1575 aa29.22■■■□□ 2.27
MCF2L-211ENST00000413354 NESP48681 1621 aa29.22■■■□□ 2.27
MCF2L-211ENST00000413354 TOP2AP11388 1531 aaKnown RBP29.1■■■□□ 2.25
MCF2L-211ENST00000413354 CUX2O14529 1486 aa29.09■■■□□ 2.25
MCF2L-211ENST00000413354 CADPSQ9ULU8 1353 aa29.01■■■□□ 2.23
MCF2L-211ENST00000413354 PDS5BQ9NTI5 1447 aa29■■■□□ 2.23
MCF2L-211ENST00000413354 KIF21AQ7Z4S6 1674 aa28.96■■■□□ 2.23
MCF2L-211ENST00000413354 THOC2Q8NI27 1593 aaKnown RBP28.92■■■□□ 2.22
MCF2L-211ENST00000413354 CFTRP13569 1480 aa28.79■■■□□ 2.2
MCF2L-211ENST00000413354 MRC2Q9UBG0 1479 aa28.72■■■□□ 2.19
MCF2L-211ENST00000413354 CEP164Q9UPV0 1460 aa28.72■■■□□ 2.19
MCF2L-211ENST00000413354 PRDM2Q13029 1718 aa28.71■■■□□ 2.19
MCF2L-211ENST00000413354 CCDC88BA6NC98 1476 aa28.69■■■□□ 2.18
MCF2L-211ENST00000413354 FANCD2Q9BXW9 1451 aa28.69■■■□□ 2.18
MCF2L-211ENST00000413354 WDR62O43379 1518 aa28.64■■■□□ 2.18
MCF2L-211ENST00000413354 URB2Q14146 1524 aaKnown RBP28.4■■■□□ 2.14
MCF2L-211ENST00000413354 DNAJC5Q9H3Z4 198 aa28.38■■■□□ 2.13
MCF2L-211ENST00000413354 SUPT5HO00267 1087 aaKnown RBP28.26■■■□□ 2.11
MCF2L-211ENST00000413354 ABCC8Q09428 1581 aa28.25■■■□□ 2.11
MCF2L-211ENST00000413354 TOPBP1Q92547 1522 aa28.21■■■□□ 2.11
MCF2L-211ENST00000413354 DNMBPQ6XZF7 1577 aa28.2■■■□□ 2.1
MCF2L-211ENST00000413354 IFT140Q96RY7 1462 aa28.12■■■□□ 2.09
MCF2L-211ENST00000413354 POLA1P09884 1462 aaPredicted RBP27.95■■■□□ 2.06
MCF2L-211ENST00000413354 ZNF608Q9ULD9 1512 aaPredicted RBP27.94■■■□□ 2.06
MCF2L-211ENST00000413354 TARBP1Q13395 1621 aaKnown RBP27.93■■■□□ 2.06
MCF2L-211ENST00000413354 EIF4G3O43432 1585 aaKnown RBP27.91■■■□□ 2.06
MCF2L-211ENST00000413354 CUX1P39880 1505 aa27.89■■■□□ 2.06
MCF2L-211ENST00000413354 FGD5Q6ZNL6 1462 aa27.84■■■□□ 2.05
MCF2L-211ENST00000413354 SOGA1O94964 1423 aa27.81■■■□□ 2.04
MCF2L-211ENST00000413354 WDR97A6NE52 1622 aa27.8■■■□□ 2.04
MCF2L-211ENST00000413354 RAD54L2Q9Y4B4 1467 aa27.78■■■□□ 2.04
MCF2L-211ENST00000413354 OSCARQ8IYS5 282 aa27.75■■■□□ 2.03
MCF2L-211ENST00000413354 AQRO60306 1485 aaKnown RBP eCLIP27.75■■■□□ 2.03
MCF2L-211ENST00000413354 BIVM-ERCC5R4GMW8 1640 aa27.65■■■□□ 2.02
MCF2L-211ENST00000413354 TDRD9Q8NDG6 1382 aaKnown RBP27.64■■■□□ 2.02
MCF2L-211ENST00000413354 CHD1O14646 1710 aa27.63■■■□□ 2.01
MCF2L-211ENST00000413354 TOP2BQ02880 1626 aa27.63■■■□□ 2.01
MCF2L-211ENST00000413354 WRNQ14191 1432 aaPredicted RBP eCLIP27.62■■■□□ 2.01
MCF2L-211ENST00000413354 ABCA10Q8WWZ4 1543 aa27.58■■■□□ 2.01
MCF2L-211ENST00000413354 SYNJ1O43426 1573 aa27.57■■■□□ 2
MCF2L-211ENST00000413354 GRIN2BQ13224 1484 aa27.56■■■□□ 2
MCF2L-211ENST00000413354 PBRM1Q86U86 1689 aa27.55■■■□□ 2
MCF2L-211ENST00000413354 SNAPC4Q5SXM2 1469 aa27.54■■■□□ 2
MCF2L-211ENST00000413354 MAGI1Q96QZ7 1491 aaPredicted RBP27.54■■■□□ 2
MCF2L-211ENST00000413354 ABCA5Q8WWZ7 1642 aa27.52■■■□□ 2
MCF2L-211ENST00000413354 GAPVD1Q14C86 1478 aa27.51■■■□□ 2
MCF2L-211ENST00000413354 FBLN2P98095 1184 aa27.46■■□□□ 1.99
MCF2L-211ENST00000413354 SYNJ2O15056 1496 aa27.4■■□□□ 1.98
MCF2L-211ENST00000413354 RIMBP3CA6NJZ7 1639 aa27.39■■□□□ 1.98
MCF2L-211ENST00000413354 RIMBP3BA6NNM3 1639 aa27.39■■□□□ 1.98
MCF2L-211ENST00000413354 RIMBP3Q9UFD9 1639 aa27.39■■□□□ 1.98
MCF2L-211ENST00000413354 CHMP7Q8WUX9 453 aaPredicted RBP27.37■■□□□ 1.97
MCF2L-211ENST00000413354 ARHGEF11O15085 1522 aa27.35■■□□□ 1.97
MCF2L-211ENST00000413354 TRIM41Q8WV44 630 aa27.33■■□□□ 1.97
MCF2L-211ENST00000413354 ADAMTS12P58397 1594 aa27.28■■□□□ 1.96
MCF2L-211ENST00000413354 CLASP1Q7Z460 1538 aa27.28■■□□□ 1.96
MCF2L-211ENST00000413354 ERICH3Q5RHP9 1530 aa27.27■■□□□ 1.96
MCF2L-211ENST00000413354 GRIN2AQ12879 1464 aa27.19■■□□□ 1.94
MCF2L-211ENST00000413354 FHAD1B1AJZ9 1412 aa27.19■■□□□ 1.94
MCF2L-211ENST00000413354 ARAP1Q96P48 1450 aa27.09■■□□□ 1.93
MCF2L-211ENST00000413354 NUP160Q12769 1436 aa27.08■■□□□ 1.93
MCF2L-211ENST00000413354 KIF27Q86VH2 1401 aa27.08■■□□□ 1.93
MCF2L-211ENST00000413354 CEP170Q5SW79 1584 aa27.06■■□□□ 1.92
MCF2L-211ENST00000413354 CYB5RLQ6IPT4 315 aa27.03■■□□□ 1.92
MCF2L-211ENST00000413354 CUL7Q14999 1698 aa27.02■■□□□ 1.92
MCF2L-211ENST00000413354 SHROOM2Q13796 1616 aa26.94■■□□□ 1.9
MCF2L-211ENST00000413354 IGF1RP08069 1367 aa26.93■■□□□ 1.9
MCF2L-211ENST00000413354 RUSC2Q8N2Y8 1516 aa26.88■■□□□ 1.89
MCF2L-211ENST00000413354 ERCC6L2Q5T890 1561 aa26.83■■□□□ 1.89
MCF2L-211ENST00000413354 CARMIL1Q5VZK9 1371 aa26.81■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms