RNA–Protein interactions for RNA: ENST00000413232.5

CPSF7-204, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 3

Gene CPSF7, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-204ENST00000413232 NISCHQ9Y2I1 1504 aa48.18■■■■■ 5.3
CPSF7-204ENST00000413232 CCDC180Q9P1Z9 1646 aa43.15■■■■■ 4.5
CPSF7-204ENST00000413232 ABCC9O60706 1549 aa43.09■■■■■ 4.49
CPSF7-204ENST00000413232 RB1CC1Q8TDY2 1594 aa40.99■■■■■ 4.15
CPSF7-204ENST00000413232 NACADO15069 1562 aa40.75■■■■■ 4.11
CPSF7-204ENST00000413232 DCAF8L2P0C7V8 631 aa40.62■■■■■ 4.09
CPSF7-204ENST00000413232 DNAJC5BQ9UF47 199 aa40.42■■■■■ 4.06
CPSF7-204ENST00000413232 UNC13AQ9UPW8 1703 aa40.25■■■■■ 4.03
CPSF7-204ENST00000413232 MYO15BQ96JP2 1530 aa40.2■■■■■ 4.03
CPSF7-204ENST00000413232 PABPN1Q86U42 306 aaKnown RBP eCLIP40.17■■■■■ 4.02
CPSF7-204ENST00000413232 ZCCHC6Q5VYS8 1495 aaKnown RBP39.94■■■■□ 3.98
CPSF7-204ENST00000413232 BICRAQ9NZM4 1560 aa39.92■■■■□ 3.98
CPSF7-204ENST00000413232 DCAF1Q9Y4B6 1507 aa39.75■■■■□ 3.95
CPSF7-204ENST00000413232 SCRIBQ14160 1630 aa39.38■■■■□ 3.89
CPSF7-204ENST00000413232 SHROOM4Q9ULL8 1493 aa39.19■■■■□ 3.86
CPSF7-204ENST00000413232 CC2D2AQ9P2K1 1620 aa38.94■■■■□ 3.82
CPSF7-204ENST00000413232 EIF4G1Q04637 1599 aaKnown RBP38.87■■■■□ 3.81
CPSF7-204ENST00000413232 CECR2Q9BXF3 1484 aa38.76■■■■□ 3.8
CPSF7-204ENST00000413232 NCAPD3P42695 1498 aa37.64■■■■□ 3.62
CPSF7-204ENST00000413232 SMARCA4P51532 1647 aa37.57■■■■□ 3.6
CPSF7-204ENST00000413232 ATAD2BQ9ULI0 1458 aa37.57■■■■□ 3.6
CPSF7-204ENST00000413232 SMARCA2P51531 1590 aa37.41■■■■□ 3.58
CPSF7-204ENST00000413232 HMGXB3Q12766 1538 aa37.35■■■■□ 3.57
CPSF7-204ENST00000413232 BAZ1AQ9NRL2 1556 aaPredicted RBP37.34■■■■□ 3.57
CPSF7-204ENST00000413232 MROH2BQ7Z745 1585 aa37.18■■■■□ 3.54
CPSF7-204ENST00000413232 PEG3Q9GZU2 1588 aa37.18■■■■□ 3.54
CPSF7-204ENST00000413232 BAZ1BQ9UIG0 1483 aaKnown RBP37.17■■■■□ 3.54
CPSF7-204ENST00000413232 ERCC6Q03468 1493 aa37.11■■■■□ 3.53
CPSF7-204ENST00000413232 NESP48681 1621 aa37.1■■■■□ 3.53
CPSF7-204ENST00000413232 CUX2O14529 1486 aa37■■■■□ 3.51
CPSF7-204ENST00000413232 DNAJC5Q9H3Z4 198 aa36.91■■■■□ 3.5
CPSF7-204ENST00000413232 WIZO95785 1651 aa36.77■■■■□ 3.48
CPSF7-204ENST00000413232 LAMC3Q9Y6N6 1575 aa36.75■■■■□ 3.47
CPSF7-204ENST00000413232 THOC2Q8NI27 1593 aaKnown RBP36.66■■■■□ 3.46
CPSF7-204ENST00000413232 KIF21AQ7Z4S6 1674 aa36.62■■■■□ 3.45
CPSF7-204ENST00000413232 PDS5BQ9NTI5 1447 aa36.51■■■■□ 3.43
CPSF7-204ENST00000413232 CADPSQ9ULU8 1353 aa36.5■■■■□ 3.43
CPSF7-204ENST00000413232 RSF1Q96T23 1441 aaPredicted RBP36.42■■■■□ 3.42
CPSF7-204ENST00000413232 TOP2AP11388 1531 aaKnown RBP36.21■■■■□ 3.39
CPSF7-204ENST00000413232 MRC2Q9UBG0 1479 aa36.21■■■■□ 3.39
CPSF7-204ENST00000413232 WDR62O43379 1518 aa36.14■■■■□ 3.38
CPSF7-204ENST00000413232 CFTRP13569 1480 aa36.12■■■■□ 3.37
CPSF7-204ENST00000413232 FANCD2Q9BXW9 1451 aa36.09■■■■□ 3.37
CPSF7-204ENST00000413232 CEP164Q9UPV0 1460 aa36.09■■■■□ 3.37
CPSF7-204ENST00000413232 CCDC88BA6NC98 1476 aa35.85■■■■□ 3.33
CPSF7-204ENST00000413232 URB2Q14146 1524 aaKnown RBP35.83■■■■□ 3.33
CPSF7-204ENST00000413232 PRDM2Q13029 1718 aa35.81■■■■□ 3.32
CPSF7-204ENST00000413232 TOPBP1Q92547 1522 aa35.44■■■■□ 3.26
CPSF7-204ENST00000413232 ZNF608Q9ULD9 1512 aaPredicted RBP35.39■■■■□ 3.26
CPSF7-204ENST00000413232 OSCARQ8IYS5 282 aa35.36■■■■□ 3.25
CPSF7-204ENST00000413232 IFT140Q96RY7 1462 aa35.35■■■■□ 3.25
CPSF7-204ENST00000413232 TRIM41Q8WV44 630 aa35.35■■■■□ 3.25
CPSF7-204ENST00000413232 DNMBPQ6XZF7 1577 aa35.3■■■■□ 3.24
CPSF7-204ENST00000413232 ABCC8Q09428 1581 aa35.28■■■■□ 3.24
CPSF7-204ENST00000413232 EIF4G3O43432 1585 aaKnown RBP35.16■■■■□ 3.22
CPSF7-204ENST00000413232 TARBP1Q13395 1621 aaKnown RBP35.15■■■■□ 3.22
CPSF7-204ENST00000413232 POLA1P09884 1462 aaPredicted RBP35.09■■■■□ 3.21
CPSF7-204ENST00000413232 AQRO60306 1485 aaKnown RBP eCLIP35.07■■■■□ 3.22e-7■■■■■ 48.1
CPSF7-204ENST00000413232 RAD54L2Q9Y4B4 1467 aa35■■■■□ 3.19
CPSF7-204ENST00000413232 RIMBP3CA6NJZ7 1639 aa34.95■■■■□ 3.18
CPSF7-204ENST00000413232 RIMBP3BA6NNM3 1639 aa34.95■■■■□ 3.18
CPSF7-204ENST00000413232 RIMBP3Q9UFD9 1639 aa34.95■■■■□ 3.18
CPSF7-204ENST00000413232 CHD1O14646 1710 aa34.93■■■■□ 3.18
CPSF7-204ENST00000413232 CUX1P39880 1505 aa34.91■■■■□ 3.18
CPSF7-204ENST00000413232 SOGA1O94964 1423 aa34.91■■■■□ 3.18
CPSF7-204ENST00000413232 SUPT5HO00267 1087 aaKnown RBP34.91■■■■□ 3.18
CPSF7-204ENST00000413232 FGD5Q6ZNL6 1462 aa34.89■■■■□ 3.18
CPSF7-204ENST00000413232 TDRD9Q8NDG6 1382 aaKnown RBP34.87■■■■□ 3.17
CPSF7-204ENST00000413232 ARHGEF11O15085 1522 aa34.82■■■■□ 3.16
CPSF7-204ENST00000413232 FBLN2P98095 1184 aa34.76■■■■□ 3.16
CPSF7-204ENST00000413232 WDR97A6NE52 1622 aa34.68■■■■□ 3.14
CPSF7-204ENST00000413232 SNAPC4Q5SXM2 1469 aa34.68■■■■□ 3.14
CPSF7-204ENST00000413232 CYB5RLQ6IPT4 315 aa34.57■■■■□ 3.12
CPSF7-204ENST00000413232 GRIN2BQ13224 1484 aa34.57■■■■□ 3.12
CPSF7-204ENST00000413232 MAGI1Q96QZ7 1491 aaPredicted RBP34.54■■■■□ 3.12
CPSF7-204ENST00000413232 PBRM1Q86U86 1689 aa34.51■■■■□ 3.12
CPSF7-204ENST00000413232 ARAP1Q96P48 1450 aa34.51■■■■□ 3.11
CPSF7-204ENST00000413232 CHMP7Q8WUX9 453 aaPredicted RBP34.5■■■■□ 3.11
CPSF7-204ENST00000413232 GAPVD1Q14C86 1478 aa34.49■■■■□ 3.11
CPSF7-204ENST00000413232 CLASP1Q7Z460 1538 aa34.48■■■■□ 3.11
CPSF7-204ENST00000413232 ABCA10Q8WWZ4 1543 aa34.48■■■■□ 3.11
CPSF7-204ENST00000413232 SYNJ2O15056 1496 aa34.45■■■■□ 3.1
CPSF7-204ENST00000413232 ABCA5Q8WWZ7 1642 aa34.44■■■■□ 3.1
CPSF7-204ENST00000413232 SYNJ1O43426 1573 aa34.4■■■■□ 3.1
CPSF7-204ENST00000413232 BIVM-ERCC5R4GMW8 1640 aa34.36■■■■□ 3.09
CPSF7-204ENST00000413232 TOP2BQ02880 1626 aa34.34■■■■□ 3.09
CPSF7-204ENST00000413232 WRNQ14191 1432 aaPredicted RBP eCLIP34.32■■■■□ 3.08
CPSF7-204ENST00000413232 ADAMTS12P58397 1594 aa34.16■■■■□ 3.06
CPSF7-204ENST00000413232 GRIN2AQ12879 1464 aa34.15■■■■□ 3.06
CPSF7-204ENST00000413232 TRHP20396 242 aaPredicted RBP34.1■■■■□ 3.05
CPSF7-204ENST00000413232 CEP170Q5SW79 1584 aa34.07■■■■□ 3.05
CPSF7-204ENST00000413232 NUP160Q12769 1436 aa34.04■■■■□ 3.04
CPSF7-204ENST00000413232 ERCC6L2Q5T890 1561 aa34.03■■■■□ 3.04
CPSF7-204ENST00000413232 ERICH3Q5RHP9 1530 aa34.03■■■■□ 3.04
CPSF7-204ENST00000413232 FHAD1B1AJZ9 1412 aa34.03■■■■□ 3.04
CPSF7-204ENST00000413232 SHROOM2Q13796 1616 aa33.9■■■■□ 3.02
CPSF7-204ENST00000413232 JPH4Q96JJ6 628 aa33.7■■■□□ 2.99
CPSF7-204ENST00000413232 PRG4Q92954 1404 aaPredicted RBP33.7■■■□□ 2.98
CPSF7-204ENST00000413232 IGF1RP08069 1367 aa33.68■■■□□ 2.98
CPSF7-204ENST00000413232 RUSC2Q8N2Y8 1516 aa33.68■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms