RNA–Protein interactions for RNA: ENST00000412899.5

ITGA6-204, Transcript of integrin subunit alpha 6, humanhuman

TSL 1 (best)

Gene ITGA6, Length 970 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA6-204ENST00000412899 NISCHQ9Y2I1 1504 aa46.69■■■■■ 5.06
ITGA6-204ENST00000412899 ABCC9O60706 1549 aa42.04■■■■■ 4.32
ITGA6-204ENST00000412899 CCDC180Q9P1Z9 1646 aa41.89■■■■■ 4.3
ITGA6-204ENST00000412899 RB1CC1Q8TDY2 1594 aa39.96■■■■□ 3.99
ITGA6-204ENST00000412899 NACADO15069 1562 aa39.66■■■■□ 3.94
ITGA6-204ENST00000412899 DCAF8L2P0C7V8 631 aa39.58■■■■□ 3.93
ITGA6-204ENST00000412899 DNAJC5BQ9UF47 199 aa39.48■■■■□ 3.91
ITGA6-204ENST00000412899 PABPN1Q86U42 306 aaKnown RBP eCLIP39.16■■■■□ 3.86
ITGA6-204ENST00000412899 MYO15BQ96JP2 1530 aa39.06■■■■□ 3.84
ITGA6-204ENST00000412899 UNC13AQ9UPW8 1703 aa38.99■■■■□ 3.83
ITGA6-204ENST00000412899 BICRAQ9NZM4 1560 aa38.75■■■■□ 3.79
ITGA6-204ENST00000412899 ZCCHC6Q5VYS8 1495 aaKnown RBP38.66■■■■□ 3.78
ITGA6-204ENST00000412899 DCAF1Q9Y4B6 1507 aa38.53■■■■□ 3.76
ITGA6-204ENST00000412899 SHROOM4Q9ULL8 1493 aa38.24■■■■□ 3.71
ITGA6-204ENST00000412899 SCRIBQ14160 1630 aa38.21■■■■□ 3.71
ITGA6-204ENST00000412899 CC2D2AQ9P2K1 1620 aa37.94■■■■□ 3.66
ITGA6-204ENST00000412899 CECR2Q9BXF3 1484 aa37.87■■■■□ 3.65
ITGA6-204ENST00000412899 EIF4G1Q04637 1599 aaKnown RBP37.84■■■■□ 3.65
ITGA6-204ENST00000412899 NCAPD3P42695 1498 aa36.62■■■■□ 3.45
ITGA6-204ENST00000412899 ATAD2BQ9ULI0 1458 aa36.5■■■■□ 3.43
ITGA6-204ENST00000412899 SMARCA4P51532 1647 aa36.42■■■■□ 3.42
ITGA6-204ENST00000412899 SMARCA2P51531 1590 aa36.4■■■■□ 3.42
ITGA6-204ENST00000412899 DNAJC5Q9H3Z4 198 aa36.33■■■■□ 3.41
ITGA6-204ENST00000412899 ERCC6Q03468 1493 aa36.32■■■■□ 3.41
ITGA6-204ENST00000412899 HMGXB3Q12766 1538 aa36.32■■■■□ 3.4
ITGA6-204ENST00000412899 BAZ1AQ9NRL2 1556 aaPredicted RBP36.26■■■■□ 3.39
ITGA6-204ENST00000412899 CUX2O14529 1486 aa36.24■■■■□ 3.39
ITGA6-204ENST00000412899 BAZ1BQ9UIG0 1483 aaKnown RBP36.17■■■■□ 3.38
ITGA6-204ENST00000412899 NESP48681 1621 aa36.07■■■■□ 3.36
ITGA6-204ENST00000412899 PEG3Q9GZU2 1588 aa36.06■■■■□ 3.36
ITGA6-204ENST00000412899 MROH2BQ7Z745 1585 aa35.98■■■■□ 3.35
ITGA6-204ENST00000412899 LAMC3Q9Y6N6 1575 aa35.81■■■■□ 3.32
ITGA6-204ENST00000412899 THOC2Q8NI27 1593 aaKnown RBP35.68■■■■□ 3.3
ITGA6-204ENST00000412899 PDS5BQ9NTI5 1447 aa35.63■■■■□ 3.29
ITGA6-204ENST00000412899 KIF21AQ7Z4S6 1674 aa35.57■■■■□ 3.28
ITGA6-204ENST00000412899 WIZO95785 1651 aa35.54■■■■□ 3.28
ITGA6-204ENST00000412899 CADPSQ9ULU8 1353 aa35.52■■■■□ 3.28
ITGA6-204ENST00000412899 MRC2Q9UBG0 1479 aa35.31■■■■□ 3.24
ITGA6-204ENST00000412899 RSF1Q96T23 1441 aaPredicted RBP35.22■■■■□ 3.23
ITGA6-204ENST00000412899 WDR62O43379 1518 aa35.2■■■■□ 3.23
ITGA6-204ENST00000412899 CEP164Q9UPV0 1460 aa35.16■■■■□ 3.22
ITGA6-204ENST00000412899 FANCD2Q9BXW9 1451 aa35.12■■■■□ 3.21
ITGA6-204ENST00000412899 TOP2AP11388 1531 aaKnown RBP35.09■■■■□ 3.21
ITGA6-204ENST00000412899 CFTRP13569 1480 aa35.08■■■■□ 3.21
ITGA6-204ENST00000412899 URB2Q14146 1524 aaKnown RBP34.81■■■■□ 3.16
ITGA6-204ENST00000412899 TRIM41Q8WV44 630 aa34.77■■■■□ 3.16
ITGA6-204ENST00000412899 CCDC88BA6NC98 1476 aa34.71■■■■□ 3.15
ITGA6-204ENST00000412899 PRDM2Q13029 1718 aa34.67■■■■□ 3.14
ITGA6-204ENST00000412899 OSCARQ8IYS5 282 aa34.64■■■■□ 3.14
ITGA6-204ENST00000412899 IFT140Q96RY7 1462 aa34.46■■■■□ 3.11
ITGA6-204ENST00000412899 TOPBP1Q92547 1522 aa34.44■■■■□ 3.1
ITGA6-204ENST00000412899 ZNF608Q9ULD9 1512 aaPredicted RBP34.4■■■■□ 3.1
ITGA6-204ENST00000412899 ABCC8Q09428 1581 aa34.37■■■■□ 3.09
ITGA6-204ENST00000412899 DNMBPQ6XZF7 1577 aa34.29■■■■□ 3.08
ITGA6-204ENST00000412899 EIF4G3O43432 1585 aaKnown RBP34.19■■■■□ 3.06
ITGA6-204ENST00000412899 RIMBP3CA6NJZ7 1639 aa34.12■■■■□ 3.05
ITGA6-204ENST00000412899 RIMBP3BA6NNM3 1639 aa34.12■■■■□ 3.05
ITGA6-204ENST00000412899 RIMBP3Q9UFD9 1639 aa34.12■■■■□ 3.05
ITGA6-204ENST00000412899 AQRO60306 1485 aaKnown RBP eCLIP34.11■■■■□ 3.05
ITGA6-204ENST00000412899 TARBP1Q13395 1621 aaKnown RBP34.1■■■■□ 3.05
ITGA6-204ENST00000412899 POLA1P09884 1462 aaPredicted RBP34.07■■■■□ 3.05
ITGA6-204ENST00000412899 ARHGEF11O15085 1522 aa34.02■■■■□ 3.04
ITGA6-204ENST00000412899 RAD54L2Q9Y4B4 1467 aa33.97■■■■□ 3.03
ITGA6-204ENST00000412899 FBLN2P98095 1184 aa33.97■■■■□ 3.03
ITGA6-204ENST00000412899 SOGA1O94964 1423 aa33.96■■■■□ 3.03
ITGA6-204ENST00000412899 CHD1O14646 1710 aa33.94■■■■□ 3.02
ITGA6-204ENST00000412899 TDRD9Q8NDG6 1382 aaKnown RBP33.9■■■■□ 3.02
ITGA6-204ENST00000412899 FGD5Q6ZNL6 1462 aa33.87■■■■□ 3.01
ITGA6-204ENST00000412899 CYB5RLQ6IPT4 315 aa33.84■■■■□ 3.01
ITGA6-204ENST00000412899 CUX1P39880 1505 aa33.79■■■■□ 3
ITGA6-204ENST00000412899 WDR97A6NE52 1622 aa33.75■■■□□ 2.99
ITGA6-204ENST00000412899 SNAPC4Q5SXM2 1469 aa33.75■■■□□ 2.99
ITGA6-204ENST00000412899 SUPT5HO00267 1087 aaKnown RBP33.7■■■□□ 2.99
ITGA6-204ENST00000412899 CHMP7Q8WUX9 453 aaPredicted RBP33.69■■■□□ 2.98
ITGA6-204ENST00000412899 ARAP1Q96P48 1450 aa33.67■■■□□ 2.98
ITGA6-204ENST00000412899 GRIN2BQ13224 1484 aa33.65■■■□□ 2.98
ITGA6-204ENST00000412899 MAGI1Q96QZ7 1491 aaPredicted RBP33.65■■■□□ 2.98
ITGA6-204ENST00000412899 SYNJ1O43426 1573 aa33.56■■■□□ 2.96
ITGA6-204ENST00000412899 CLASP1Q7Z460 1538 aa33.55■■■□□ 2.96
ITGA6-204ENST00000412899 SYNJ2O15056 1496 aa33.55■■■□□ 2.96
ITGA6-204ENST00000412899 TRHP20396 242 aaPredicted RBP33.53■■■□□ 2.96
ITGA6-204ENST00000412899 GAPVD1Q14C86 1478 aa33.52■■■□□ 2.96
ITGA6-204ENST00000412899 PBRM1Q86U86 1689 aa33.47■■■□□ 2.95
ITGA6-204ENST00000412899 ABCA10Q8WWZ4 1543 aa33.46■■■□□ 2.95
ITGA6-204ENST00000412899 ABCA5Q8WWZ7 1642 aa33.39■■■□□ 2.94
ITGA6-204ENST00000412899 WRNQ14191 1432 aaPredicted RBP eCLIP33.35■■■□□ 2.93
ITGA6-204ENST00000412899 TOP2BQ02880 1626 aa33.24■■■□□ 2.91
ITGA6-204ENST00000412899 BIVM-ERCC5R4GMW8 1640 aa33.23■■■□□ 2.91
ITGA6-204ENST00000412899 GRIN2AQ12879 1464 aa33.21■■■□□ 2.91
ITGA6-204ENST00000412899 ADAMTS12P58397 1594 aa33.15■■■□□ 2.9
ITGA6-204ENST00000412899 FHAD1B1AJZ9 1412 aa33.11■■■□□ 2.89
ITGA6-204ENST00000412899 NUP160Q12769 1436 aa33.09■■■□□ 2.89
ITGA6-204ENST00000412899 CEP170Q5SW79 1584 aa33.08■■■□□ 2.89
ITGA6-204ENST00000412899 ERICH3Q5RHP9 1530 aa33.04■■■□□ 2.88
ITGA6-204ENST00000412899 ERCC6L2Q5T890 1561 aa33.04■■■□□ 2.88
ITGA6-204ENST00000412899 SHROOM2Q13796 1616 aa32.92■■■□□ 2.86
ITGA6-204ENST00000412899 PRG4Q92954 1404 aaPredicted RBP32.82■■■□□ 2.84
ITGA6-204ENST00000412899 JPH4Q96JJ6 628 aa32.81■■■□□ 2.84
ITGA6-204ENST00000412899 RUSC2Q8N2Y8 1516 aa32.69■■■□□ 2.82
ITGA6-204ENST00000412899 KIF27Q86VH2 1401 aa32.64■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms