RNA–Protein interactions for RNA: ENST00000412847.5

PTPRN-203, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-203ENST00000412847 NISCHQ9Y2I1 1504 aa33.04■■■□□ 2.88
PTPRN-203ENST00000412847 ABCC9O60706 1549 aa30.04■■■□□ 2.4
PTPRN-203ENST00000412847 CCDC180Q9P1Z9 1646 aa29.97■■■□□ 2.39
PTPRN-203ENST00000412847 RB1CC1Q8TDY2 1594 aa28.57■■■□□ 2.16
PTPRN-203ENST00000412847 DNAJC5BQ9UF47 199 aa28.3■■■□□ 2.12
PTPRN-203ENST00000412847 NACADO15069 1562 aa28.27■■■□□ 2.12
PTPRN-203ENST00000412847 UNC13AQ9UPW8 1703 aa28.12■■■□□ 2.09
PTPRN-203ENST00000412847 DCAF8L2P0C7V8 631 aa27.84■■■□□ 2.05
PTPRN-203ENST00000412847 PABPN1Q86U42 306 aaKnown RBP eCLIP27.8■■■□□ 2.04
PTPRN-203ENST00000412847 MYO15BQ96JP2 1530 aa27.76■■■□□ 2.03
PTPRN-203ENST00000412847 BICRAQ9NZM4 1560 aa27.73■■■□□ 2.03
PTPRN-203ENST00000412847 ZCCHC6Q5VYS8 1495 aaKnown RBP27.34■■□□□ 1.97
PTPRN-203ENST00000412847 SHROOM4Q9ULL8 1493 aa27.32■■□□□ 1.96
PTPRN-203ENST00000412847 DCAF1Q9Y4B6 1507 aa27.31■■□□□ 1.96
PTPRN-203ENST00000412847 CC2D2AQ9P2K1 1620 aa27.21■■□□□ 1.95
PTPRN-203ENST00000412847 SCRIBQ14160 1630 aa27.19■■□□□ 1.94
PTPRN-203ENST00000412847 CECR2Q9BXF3 1484 aa27.09■■□□□ 1.93
PTPRN-203ENST00000412847 EIF4G1Q04637 1599 aaKnown RBP27.07■■□□□ 1.92
PTPRN-203ENST00000412847 DNAJC5Q9H3Z4 198 aa26.23■■□□□ 1.79
PTPRN-203ENST00000412847 CUX2O14529 1486 aa26.04■■□□□ 1.76
PTPRN-203ENST00000412847 NCAPD3P42695 1498 aa26.01■■□□□ 1.75
PTPRN-203ENST00000412847 ERCC6Q03468 1493 aa25.98■■□□□ 1.75
PTPRN-203ENST00000412847 SMARCA4P51532 1647 aa25.92■■□□□ 1.74
PTPRN-203ENST00000412847 ATAD2BQ9ULI0 1458 aa25.9■■□□□ 1.74
PTPRN-203ENST00000412847 HMGXB3Q12766 1538 aa25.89■■□□□ 1.74
PTPRN-203ENST00000412847 SMARCA2P51531 1590 aa25.89■■□□□ 1.73
PTPRN-203ENST00000412847 NESP48681 1621 aa25.73■■□□□ 1.71
PTPRN-203ENST00000412847 BAZ1AQ9NRL2 1556 aaPredicted RBP25.71■■□□□ 1.71
PTPRN-203ENST00000412847 BAZ1BQ9UIG0 1483 aaKnown RBP25.67■■□□□ 1.7
PTPRN-203ENST00000412847 THOC2Q8NI27 1593 aaKnown RBP25.66■■□□□ 1.7
PTPRN-203ENST00000412847 PEG3Q9GZU2 1588 aa25.65■■□□□ 1.7
PTPRN-203ENST00000412847 LAMC3Q9Y6N6 1575 aa25.59■■□□□ 1.69
PTPRN-203ENST00000412847 KIF21AQ7Z4S6 1674 aa25.58■■□□□ 1.68
PTPRN-203ENST00000412847 MROH2BQ7Z745 1585 aa25.45■■□□□ 1.66
PTPRN-203ENST00000412847 PDS5BQ9NTI5 1447 aa25.34■■□□□ 1.65
PTPRN-203ENST00000412847 WIZO95785 1651 aa25.23■■□□□ 1.63
PTPRN-203ENST00000412847 MRC2Q9UBG0 1479 aa25.19■■□□□ 1.62
PTPRN-203ENST00000412847 WDR62O43379 1518 aa25.18■■□□□ 1.62
PTPRN-203ENST00000412847 CADPSQ9ULU8 1353 aa25.17■■□□□ 1.62
PTPRN-203ENST00000412847 CEP164Q9UPV0 1460 aa25.04■■□□□ 1.6
PTPRN-203ENST00000412847 TRIM41Q8WV44 630 aa24.97■■□□□ 1.59
PTPRN-203ENST00000412847 FANCD2Q9BXW9 1451 aa24.95■■□□□ 1.58
PTPRN-203ENST00000412847 PRDM2Q13029 1718 aa24.93■■□□□ 1.58
PTPRN-203ENST00000412847 CFTRP13569 1480 aa24.86■■□□□ 1.57
PTPRN-203ENST00000412847 TOP2AP11388 1531 aaKnown RBP24.85■■□□□ 1.57
PTPRN-203ENST00000412847 URB2Q14146 1524 aaKnown RBP24.78■■□□□ 1.56
PTPRN-203ENST00000412847 RSF1Q96T23 1441 aaPredicted RBP24.75■■□□□ 1.55
PTPRN-203ENST00000412847 OSCARQ8IYS5 282 aa24.66■■□□□ 1.54
PTPRN-203ENST00000412847 RIMBP3CA6NJZ7 1639 aa24.6■■□□□ 1.53
PTPRN-203ENST00000412847 RIMBP3BA6NNM3 1639 aa24.6■■□□□ 1.53
PTPRN-203ENST00000412847 RIMBP3Q9UFD9 1639 aa24.6■■□□□ 1.53
PTPRN-203ENST00000412847 IFT140Q96RY7 1462 aa24.52■■□□□ 1.52
PTPRN-203ENST00000412847 ZNF608Q9ULD9 1512 aaPredicted RBP24.5■■□□□ 1.51
PTPRN-203ENST00000412847 EIF4G3O43432 1585 aaKnown RBP24.49■■□□□ 1.51
PTPRN-203ENST00000412847 CCDC88BA6NC98 1476 aa24.48■■□□□ 1.51
PTPRN-203ENST00000412847 TOPBP1Q92547 1522 aa24.47■■□□□ 1.51
PTPRN-203ENST00000412847 CHD1O14646 1710 aa24.44■■□□□ 1.5
PTPRN-203ENST00000412847 ARHGEF11O15085 1522 aa24.42■■□□□ 1.5
PTPRN-203ENST00000412847 DNMBPQ6XZF7 1577 aa24.41■■□□□ 1.5
PTPRN-203ENST00000412847 ABCC8Q09428 1581 aa24.39■■□□□ 1.5
PTPRN-203ENST00000412847 TARBP1Q13395 1621 aaKnown RBP24.34■■□□□ 1.49
PTPRN-203ENST00000412847 AQRO60306 1485 aaKnown RBP eCLIP24.19■■□□□ 1.46
PTPRN-203ENST00000412847 POLA1P09884 1462 aaPredicted RBP24.18■■□□□ 1.46
PTPRN-203ENST00000412847 ARAP1Q96P48 1450 aa24.14■■□□□ 1.46
PTPRN-203ENST00000412847 WDR97A6NE52 1622 aa24.11■■□□□ 1.45
PTPRN-203ENST00000412847 CYB5RLQ6IPT4 315 aa24.11■■□□□ 1.45
PTPRN-203ENST00000412847 RAD54L2Q9Y4B4 1467 aa24.07■■□□□ 1.44
PTPRN-203ENST00000412847 FBLN2P98095 1184 aa24.04■■□□□ 1.44
PTPRN-203ENST00000412847 CLASP1Q7Z460 1538 aa24.03■■□□□ 1.44
PTPRN-203ENST00000412847 SOGA1O94964 1423 aa24.01■■□□□ 1.43
PTPRN-203ENST00000412847 SNAPC4Q5SXM2 1469 aa24.01■■□□□ 1.43
PTPRN-203ENST00000412847 FGD5Q6ZNL6 1462 aa24■■□□□ 1.43
PTPRN-203ENST00000412847 SYNJ1O43426 1573 aa24■■□□□ 1.43
PTPRN-203ENST00000412847 PBRM1Q86U86 1689 aa23.99■■□□□ 1.43
PTPRN-203ENST00000412847 TDRD9Q8NDG6 1382 aaKnown RBP23.97■■□□□ 1.43
PTPRN-203ENST00000412847 TRHP20396 242 aaPredicted RBP23.96■■□□□ 1.43
PTPRN-203ENST00000412847 CUX1P39880 1505 aa23.94■■□□□ 1.42
PTPRN-203ENST00000412847 MAGI1Q96QZ7 1491 aaPredicted RBP23.94■■□□□ 1.42
PTPRN-203ENST00000412847 GRIN2BQ13224 1484 aa23.88■■□□□ 1.41
PTPRN-203ENST00000412847 SYNJ2O15056 1496 aa23.85■■□□□ 1.41
PTPRN-203ENST00000412847 CHMP7Q8WUX9 453 aaPredicted RBP23.82■■□□□ 1.4
PTPRN-203ENST00000412847 ABCA5Q8WWZ7 1642 aa23.81■■□□□ 1.4
PTPRN-203ENST00000412847 GAPVD1Q14C86 1478 aa23.75■■□□□ 1.39
PTPRN-203ENST00000412847 ABCA10Q8WWZ4 1543 aa23.7■■□□□ 1.38
PTPRN-203ENST00000412847 ADAMTS12P58397 1594 aa23.64■■□□□ 1.37
PTPRN-203ENST00000412847 BIVM-ERCC5R4GMW8 1640 aa23.61■■□□□ 1.37
PTPRN-203ENST00000412847 GRIN2AQ12879 1464 aa23.61■■□□□ 1.37
PTPRN-203ENST00000412847 ERCC6L2Q5T890 1561 aa23.61■■□□□ 1.37
PTPRN-203ENST00000412847 CEP170Q5SW79 1584 aa23.58■■□□□ 1.37
PTPRN-203ENST00000412847 SHROOM2Q13796 1616 aa23.56■■□□□ 1.36
PTPRN-203ENST00000412847 TOP2BQ02880 1626 aa23.53■■□□□ 1.36
PTPRN-203ENST00000412847 NUP160Q12769 1436 aa23.5■■□□□ 1.35
PTPRN-203ENST00000412847 WRNQ14191 1432 aaPredicted RBP eCLIP23.5■■□□□ 1.35
PTPRN-203ENST00000412847 KIF13AQ9H1H9 1805 aa23.49■■□□□ 1.35
PTPRN-203ENST00000412847 AEBP2Q6ZN18 517 aaPredicted RBP23.49■■□□□ 1.35
PTPRN-203ENST00000412847 ERICH3Q5RHP9 1530 aa23.43■■□□□ 1.34
PTPRN-203ENST00000412847 FHAD1B1AJZ9 1412 aa23.43■■□□□ 1.34
PTPRN-203ENST00000412847 SUPT5HO00267 1087 aaKnown RBP23.35■■□□□ 1.33
PTPRN-203ENST00000412847 RUSC2Q8N2Y8 1516 aa23.33■■□□□ 1.32
PTPRN-203ENST00000412847 PRG4Q92954 1404 aaPredicted RBP23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms