RNA–Protein interactions for RNA: ENST00000412714.1

LINC00388-201, long intergenic non-protein coding RNA 388, humanhuman

TSL 5 BASIC

Gene LINC00388, Length 663 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00388-201ENST00000412714 NISCHQ9Y2I1 1504 aa31.45■■■□□ 2.63
LINC00388-201ENST00000412714 CCDC180Q9P1Z9 1646 aa28.25■■■□□ 2.11
LINC00388-201ENST00000412714 ABCC9O60706 1549 aa28.2■■■□□ 2.1
LINC00388-201ENST00000412714 RB1CC1Q8TDY2 1594 aa26.88■■□□□ 1.89
LINC00388-201ENST00000412714 NACADO15069 1562 aa26.69■■□□□ 1.86
LINC00388-201ENST00000412714 DCAF8L2P0C7V8 631 aa26.57■■□□□ 1.84
LINC00388-201ENST00000412714 DNAJC5BQ9UF47 199 aa26.36■■□□□ 1.81
LINC00388-201ENST00000412714 MYO15BQ96JP2 1530 aa26.32■■□□□ 1.8
LINC00388-201ENST00000412714 PABPN1Q86U42 306 aaKnown RBP eCLIP26.25■■□□□ 1.79
LINC00388-201ENST00000412714 UNC13AQ9UPW8 1703 aa26.24■■□□□ 1.79
LINC00388-201ENST00000412714 ZCCHC6Q5VYS8 1495 aaKnown RBP26.08■■□□□ 1.77
LINC00388-201ENST00000412714 BICRAQ9NZM4 1560 aa26.04■■□□□ 1.76
LINC00388-201ENST00000412714 DCAF1Q9Y4B6 1507 aa25.99■■□□□ 1.75
LINC00388-201ENST00000412714 SHROOM4Q9ULL8 1493 aa25.76■■□□□ 1.71
LINC00388-201ENST00000412714 SCRIBQ14160 1630 aa25.74■■□□□ 1.71
LINC00388-201ENST00000412714 CC2D2AQ9P2K1 1620 aa25.48■■□□□ 1.67
LINC00388-201ENST00000412714 EIF4G1Q04637 1599 aaKnown RBP25.44■■□□□ 1.66
LINC00388-201ENST00000412714 CECR2Q9BXF3 1484 aa25.41■■□□□ 1.66
LINC00388-201ENST00000412714 NCAPD3P42695 1498 aa24.62■■□□□ 1.53
LINC00388-201ENST00000412714 ATAD2BQ9ULI0 1458 aa24.55■■□□□ 1.52
LINC00388-201ENST00000412714 SMARCA4P51532 1647 aa24.54■■□□□ 1.52
LINC00388-201ENST00000412714 SMARCA2P51531 1590 aa24.52■■□□□ 1.52
LINC00388-201ENST00000412714 HMGXB3Q12766 1538 aa24.46■■□□□ 1.51
LINC00388-201ENST00000412714 BAZ1AQ9NRL2 1556 aaPredicted RBP24.44■■□□□ 1.5
LINC00388-201ENST00000412714 ERCC6Q03468 1493 aa24.39■■□□□ 1.5
LINC00388-201ENST00000412714 BAZ1BQ9UIG0 1483 aaKnown RBP24.35■■□□□ 1.49
LINC00388-201ENST00000412714 CUX2O14529 1486 aa24.32■■□□□ 1.48
LINC00388-201ENST00000412714 PEG3Q9GZU2 1588 aa24.29■■□□□ 1.48
LINC00388-201ENST00000412714 DNAJC5Q9H3Z4 198 aa24.24■■□□□ 1.47
LINC00388-201ENST00000412714 MROH2BQ7Z745 1585 aa24.22■■□□□ 1.47
LINC00388-201ENST00000412714 NESP48681 1621 aa24.21■■□□□ 1.47
LINC00388-201ENST00000412714 LAMC3Q9Y6N6 1575 aa24.09■■□□□ 1.45
LINC00388-201ENST00000412714 THOC2Q8NI27 1593 aaKnown RBP23.99■■□□□ 1.43
LINC00388-201ENST00000412714 PDS5BQ9NTI5 1447 aa23.96■■□□□ 1.43
LINC00388-201ENST00000412714 WIZO95785 1651 aa23.95■■□□□ 1.42
LINC00388-201ENST00000412714 KIF21AQ7Z4S6 1674 aa23.93■■□□□ 1.42
LINC00388-201ENST00000412714 CADPSQ9ULU8 1353 aa23.88■■□□□ 1.41
LINC00388-201ENST00000412714 MRC2Q9UBG0 1479 aa23.75■■□□□ 1.39
LINC00388-201ENST00000412714 RSF1Q96T23 1441 aaPredicted RBP23.74■■□□□ 1.39
LINC00388-201ENST00000412714 WDR62O43379 1518 aa23.67■■□□□ 1.38
LINC00388-201ENST00000412714 TOP2AP11388 1531 aaKnown RBP23.67■■□□□ 1.38
LINC00388-201ENST00000412714 CEP164Q9UPV0 1460 aa23.67■■□□□ 1.38
LINC00388-201ENST00000412714 FANCD2Q9BXW9 1451 aa23.62■■□□□ 1.37
LINC00388-201ENST00000412714 CFTRP13569 1480 aa23.61■■□□□ 1.37
LINC00388-201ENST00000412714 PRDM2Q13029 1718 aa23.42■■□□□ 1.34
LINC00388-201ENST00000412714 URB2Q14146 1524 aaKnown RBP23.4■■□□□ 1.34
LINC00388-201ENST00000412714 CCDC88BA6NC98 1476 aa23.37■■□□□ 1.33
LINC00388-201ENST00000412714 TRIM41Q8WV44 630 aa23.22■■□□□ 1.31
LINC00388-201ENST00000412714 OSCARQ8IYS5 282 aa23.2■■□□□ 1.3
LINC00388-201ENST00000412714 IFT140Q96RY7 1462 aa23.18■■□□□ 1.3
LINC00388-201ENST00000412714 TOPBP1Q92547 1522 aa23.17■■□□□ 1.3
LINC00388-201ENST00000412714 ABCC8Q09428 1581 aa23.14■■□□□ 1.3
LINC00388-201ENST00000412714 DNMBPQ6XZF7 1577 aa23.1■■□□□ 1.29
LINC00388-201ENST00000412714 ZNF608Q9ULD9 1512 aaPredicted RBP23.1■■□□□ 1.29
LINC00388-201ENST00000412714 EIF4G3O43432 1585 aaKnown RBP23.01■■□□□ 1.27
LINC00388-201ENST00000412714 TARBP1Q13395 1621 aaKnown RBP22.95■■□□□ 1.26
LINC00388-201ENST00000412714 POLA1P09884 1462 aaPredicted RBP22.93■■□□□ 1.26
LINC00388-201ENST00000412714 AQRO60306 1485 aaKnown RBP eCLIP22.91■■□□□ 1.26
LINC00388-201ENST00000412714 RIMBP3CA6NJZ7 1639 aa22.9■■□□□ 1.26
LINC00388-201ENST00000412714 RIMBP3BA6NNM3 1639 aa22.9■■□□□ 1.26
LINC00388-201ENST00000412714 RIMBP3Q9UFD9 1639 aa22.9■■□□□ 1.26
LINC00388-201ENST00000412714 CHD1O14646 1710 aa22.84■■□□□ 1.25
LINC00388-201ENST00000412714 RAD54L2Q9Y4B4 1467 aa22.84■■□□□ 1.25
LINC00388-201ENST00000412714 SOGA1O94964 1423 aa22.83■■□□□ 1.25
LINC00388-201ENST00000412714 ARHGEF11O15085 1522 aa22.82■■□□□ 1.24
LINC00388-201ENST00000412714 FGD5Q6ZNL6 1462 aa22.8■■□□□ 1.24
LINC00388-201ENST00000412714 FBLN2P98095 1184 aa22.79■■□□□ 1.24
LINC00388-201ENST00000412714 TDRD9Q8NDG6 1382 aaKnown RBP22.77■■□□□ 1.24
LINC00388-201ENST00000412714 CUX1P39880 1505 aa22.77■■□□□ 1.24
LINC00388-201ENST00000412714 WDR97A6NE52 1622 aa22.76■■□□□ 1.23
LINC00388-201ENST00000412714 SUPT5HO00267 1087 aaKnown RBP22.73■■□□□ 1.23
LINC00388-201ENST00000412714 SNAPC4Q5SXM2 1469 aa22.7■■□□□ 1.22
LINC00388-201ENST00000412714 CYB5RLQ6IPT4 315 aa22.65■■□□□ 1.22
LINC00388-201ENST00000412714 GRIN2BQ13224 1484 aa22.65■■□□□ 1.22
LINC00388-201ENST00000412714 MAGI1Q96QZ7 1491 aaPredicted RBP22.65■■□□□ 1.22
LINC00388-201ENST00000412714 CHMP7Q8WUX9 453 aaPredicted RBP22.63■■□□□ 1.21
LINC00388-201ENST00000412714 ARAP1Q96P48 1450 aa22.6■■□□□ 1.21
LINC00388-201ENST00000412714 SYNJ1O43426 1573 aa22.59■■□□□ 1.21
LINC00388-201ENST00000412714 SYNJ2O15056 1496 aa22.57■■□□□ 1.2
LINC00388-201ENST00000412714 GAPVD1Q14C86 1478 aa22.57■■□□□ 1.2
LINC00388-201ENST00000412714 PBRM1Q86U86 1689 aa22.57■■□□□ 1.2
LINC00388-201ENST00000412714 CLASP1Q7Z460 1538 aa22.56■■□□□ 1.2
LINC00388-201ENST00000412714 ABCA10Q8WWZ4 1543 aa22.54■■□□□ 1.2
LINC00388-201ENST00000412714 ABCA5Q8WWZ7 1642 aa22.5■■□□□ 1.19
LINC00388-201ENST00000412714 WRNQ14191 1432 aaPredicted RBP eCLIP22.48■■□□□ 1.19
LINC00388-201ENST00000412714 TRHP20396 242 aaPredicted RBP22.43■■□□□ 1.18
LINC00388-201ENST00000412714 TOP2BQ02880 1626 aa22.42■■□□□ 1.18
LINC00388-201ENST00000412714 BIVM-ERCC5R4GMW8 1640 aa22.42■■□□□ 1.18
LINC00388-201ENST00000412714 GRIN2AQ12879 1464 aa22.34■■□□□ 1.17
LINC00388-201ENST00000412714 ADAMTS12P58397 1594 aa22.34■■□□□ 1.17
LINC00388-201ENST00000412714 FHAD1B1AJZ9 1412 aa22.28■■□□□ 1.16
LINC00388-201ENST00000412714 ERICH3Q5RHP9 1530 aa22.27■■□□□ 1.16
LINC00388-201ENST00000412714 NUP160Q12769 1436 aa22.26■■□□□ 1.15
LINC00388-201ENST00000412714 CEP170Q5SW79 1584 aa22.25■■□□□ 1.15
LINC00388-201ENST00000412714 ERCC6L2Q5T890 1561 aa22.19■■□□□ 1.14
LINC00388-201ENST00000412714 SHROOM2Q13796 1616 aa22.16■■□□□ 1.14
LINC00388-201ENST00000412714 PRG4Q92954 1404 aaPredicted RBP22.06■■□□□ 1.12
LINC00388-201ENST00000412714 JPH4Q96JJ6 628 aa22.04■■□□□ 1.12
LINC00388-201ENST00000412714 RUSC2Q8N2Y8 1516 aa22.03■■□□□ 1.12
LINC00388-201ENST00000412714 KIF27Q86VH2 1401 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms