RNA–Protein interactions for RNA: ENST00000412640.6

SOX9-AS1-201, SOX9 antisense RNA 1, humanhuman

TSL 3 BASIC

Gene SOX9-AS1, Length 635 nt, Biotype lincRNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9-AS1-201ENST00000412640 NISCHQ9Y2I1 1504 aa24■■□□□ 1.43
SOX9-AS1-201ENST00000412640 ABCC9O60706 1549 aa22.84■■□□□ 1.25
SOX9-AS1-201ENST00000412640 DNAJC5BQ9UF47 199 aa22.27■■□□□ 1.16
SOX9-AS1-201ENST00000412640 CCDC180Q9P1Z9 1646 aa21.84■■□□□ 1.09
SOX9-AS1-201ENST00000412640 RB1CC1Q8TDY2 1594 aa21.25■□□□□ 0.99
SOX9-AS1-201ENST00000412640 PABPN1Q86U42 306 aaKnown RBP eCLIP21.19■□□□□ 0.98
SOX9-AS1-201ENST00000412640 DNAJC5Q9H3Z4 198 aa21.01■□□□□ 0.95
SOX9-AS1-201ENST00000412640 NACADO15069 1562 aa20.88■□□□□ 0.93
SOX9-AS1-201ENST00000412640 DCAF8L2P0C7V8 631 aa20.81■□□□□ 0.92
SOX9-AS1-201ENST00000412640 UNC13AQ9UPW8 1703 aa20.78■□□□□ 0.92
SOX9-AS1-201ENST00000412640 BICRAQ9NZM4 1560 aa20.71■□□□□ 0.91
SOX9-AS1-201ENST00000412640 CECR2Q9BXF3 1484 aa20.62■□□□□ 0.89
SOX9-AS1-201ENST00000412640 CC2D2AQ9P2K1 1620 aa20.53■□□□□ 0.88
SOX9-AS1-201ENST00000412640 EIF4G1Q04637 1599 aaKnown RBP20.25■□□□□ 0.83
SOX9-AS1-201ENST00000412640 MYO15BQ96JP2 1530 aa20.25■□□□□ 0.83
SOX9-AS1-201ENST00000412640 SHROOM4Q9ULL8 1493 aa20.2■□□□□ 0.82
SOX9-AS1-201ENST00000412640 SCRIBQ14160 1630 aa19.95■□□□□ 0.78
SOX9-AS1-201ENST00000412640 CUX2O14529 1486 aa19.94■□□□□ 0.78
SOX9-AS1-201ENST00000412640 TRIM41Q8WV44 630 aa19.81■□□□□ 0.76
SOX9-AS1-201ENST00000412640 ERCC6Q03468 1493 aa19.75■□□□□ 0.75
SOX9-AS1-201ENST00000412640 DCAF1Q9Y4B6 1507 aa19.69■□□□□ 0.74
SOX9-AS1-201ENST00000412640 ZCCHC6Q5VYS8 1495 aaKnown RBP19.68■□□□□ 0.74
SOX9-AS1-201ENST00000412640 NESP48681 1621 aa19.38■□□□□ 0.69
SOX9-AS1-201ENST00000412640 NCAPD3P42695 1498 aa19.32■□□□□ 0.68
SOX9-AS1-201ENST00000412640 THOC2Q8NI27 1593 aaKnown RBP19.27■□□□□ 0.67
SOX9-AS1-201ENST00000412640 ATAD2BQ9ULI0 1458 aa19.16■□□□□ 0.66
SOX9-AS1-201ENST00000412640 SMARCA2P51531 1590 aa19.15■□□□□ 0.66
SOX9-AS1-201ENST00000412640 HMGXB3Q12766 1538 aa19.05■□□□□ 0.64
SOX9-AS1-201ENST00000412640 KIF21AQ7Z4S6 1674 aa19.04■□□□□ 0.64
SOX9-AS1-201ENST00000412640 LAMC3Q9Y6N6 1575 aa19■□□□□ 0.63
SOX9-AS1-201ENST00000412640 OSCARQ8IYS5 282 aa18.97■□□□□ 0.63
SOX9-AS1-201ENST00000412640 BAZ1AQ9NRL2 1556 aaPredicted RBP18.96■□□□□ 0.63
SOX9-AS1-201ENST00000412640 PDS5BQ9NTI5 1447 aa18.95■□□□□ 0.62
SOX9-AS1-201ENST00000412640 BAZ1BQ9UIG0 1483 aaKnown RBP18.92■□□□□ 0.62
SOX9-AS1-201ENST00000412640 SMARCA4P51532 1647 aa18.9■□□□□ 0.62
SOX9-AS1-201ENST00000412640 MRC2Q9UBG0 1479 aa18.84■□□□□ 0.61
SOX9-AS1-201ENST00000412640 AEBP2Q6ZN18 517 aaPredicted RBP18.81■□□□□ 0.6
SOX9-AS1-201ENST00000412640 WDR62O43379 1518 aa18.79■□□□□ 0.6
SOX9-AS1-201ENST00000412640 RIMBP3CA6NJZ7 1639 aa18.79■□□□□ 0.6
SOX9-AS1-201ENST00000412640 RIMBP3BA6NNM3 1639 aa18.79■□□□□ 0.6
SOX9-AS1-201ENST00000412640 RIMBP3Q9UFD9 1639 aa18.79■□□□□ 0.6
SOX9-AS1-201ENST00000412640 TRHP20396 242 aaPredicted RBP18.73■□□□□ 0.59
SOX9-AS1-201ENST00000412640 CADPSQ9ULU8 1353 aa18.71■□□□□ 0.59
SOX9-AS1-201ENST00000412640 PEG3Q9GZU2 1588 aa18.67■□□□□ 0.58
SOX9-AS1-201ENST00000412640 CYB5RLQ6IPT4 315 aa18.65■□□□□ 0.58
SOX9-AS1-201ENST00000412640 ARHGEF11O15085 1522 aa18.64■□□□□ 0.57
SOX9-AS1-201ENST00000412640 CEP164Q9UPV0 1460 aa18.59■□□□□ 0.57
SOX9-AS1-201ENST00000412640 MROH2BQ7Z745 1585 aa18.53■□□□□ 0.56
SOX9-AS1-201ENST00000412640 FANCD2Q9BXW9 1451 aa18.51■□□□□ 0.55
SOX9-AS1-201ENST00000412640 URB2Q14146 1524 aaKnown RBP18.43■□□□□ 0.54
SOX9-AS1-201ENST00000412640 ARAP1Q96P48 1450 aa18.4■□□□□ 0.54
SOX9-AS1-201ENST00000412640 ZNF608Q9ULD9 1512 aaPredicted RBP18.37■□□□□ 0.53
SOX9-AS1-201ENST00000412640 CFTRP13569 1480 aa18.3■□□□□ 0.52
SOX9-AS1-201ENST00000412640 WIZO95785 1651 aa18.25■□□□□ 0.51
SOX9-AS1-201ENST00000412640 IFT140Q96RY7 1462 aa18.24■□□□□ 0.51
SOX9-AS1-201ENST00000412640 FBLN2P98095 1184 aa18.21■□□□□ 0.51
SOX9-AS1-201ENST00000412640 CHD1O14646 1710 aa18.2■□□□□ 0.5
SOX9-AS1-201ENST00000412640 RSF1Q96T23 1441 aaPredicted RBP18.19■□□□□ 0.5
SOX9-AS1-201ENST00000412640 ILDR1Q86SU0 546 aaPredicted RBP18.16■□□□□ 0.5
SOX9-AS1-201ENST00000412640 EIF4G3O43432 1585 aaKnown RBP18.16■□□□□ 0.5
SOX9-AS1-201ENST00000412640 AQRO60306 1485 aaKnown RBP eCLIP18.11■□□□□ 0.49
SOX9-AS1-201ENST00000412640 TOPBP1Q92547 1522 aa18.06■□□□□ 0.48
SOX9-AS1-201ENST00000412640 PRDM2Q13029 1718 aa17.96■□□□□ 0.47
SOX9-AS1-201ENST00000412640 CLASP1Q7Z460 1538 aa17.96■□□□□ 0.47
SOX9-AS1-201ENST00000412640 TARBP1Q13395 1621 aaKnown RBP17.95■□□□□ 0.46
SOX9-AS1-201ENST00000412640 TOP2AP11388 1531 aaKnown RBP17.91■□□□□ 0.46
SOX9-AS1-201ENST00000412640 ABCC8Q09428 1581 aa17.9■□□□□ 0.46
SOX9-AS1-201ENST00000412640 DNMBPQ6XZF7 1577 aa17.88■□□□□ 0.45
SOX9-AS1-201ENST00000412640 CHMP7Q8WUX9 453 aaPredicted RBP17.88■□□□□ 0.45
SOX9-AS1-201ENST00000412640 GAPVD1Q14C86 1478 aa17.88■□□□□ 0.45
SOX9-AS1-201ENST00000412640 TDRD9Q8NDG6 1382 aaKnown RBP17.87■□□□□ 0.45
SOX9-AS1-201ENST00000412640 SYNJ1O43426 1573 aa17.86■□□□□ 0.45
SOX9-AS1-201ENST00000412640 SNAPC4Q5SXM2 1469 aa17.85■□□□□ 0.45
SOX9-AS1-201ENST00000412640 RAD54L2Q9Y4B4 1467 aa17.82■□□□□ 0.44
SOX9-AS1-201ENST00000412640 POLA1P09884 1462 aaPredicted RBP17.82■□□□□ 0.44
SOX9-AS1-201ENST00000412640 KDM4FA0A1W2PPD8 638 aa17.79■□□□□ 0.44
SOX9-AS1-201ENST00000412640 CCDC88BA6NC98 1476 aa17.78■□□□□ 0.44
SOX9-AS1-201ENST00000412640 SOGA1O94964 1423 aa17.75■□□□□ 0.43
SOX9-AS1-201ENST00000412640 MAGI1Q96QZ7 1491 aaPredicted RBP17.72■□□□□ 0.43
SOX9-AS1-201ENST00000412640 SYNJ2O15056 1496 aa17.69■□□□□ 0.42
SOX9-AS1-201ENST00000412640 ERCC6L2Q5T890 1561 aa17.69■□□□□ 0.42
SOX9-AS1-201ENST00000412640 KIF13AQ9H1H9 1805 aa17.68■□□□□ 0.42
SOX9-AS1-201ENST00000412640 GRIN2BQ13224 1484 aa17.66■□□□□ 0.42
SOX9-AS1-201ENST00000412640 WDR97A6NE52 1622 aa17.61■□□□□ 0.41
SOX9-AS1-201ENST00000412640 FGD5Q6ZNL6 1462 aa17.59■□□□□ 0.41
SOX9-AS1-201ENST00000412640 FAM69CQ0P6D2 419 aa17.58■□□□□ 0.4
SOX9-AS1-201ENST00000412640 CEP170Q5SW79 1584 aa17.53■□□□□ 0.4
SOX9-AS1-201ENST00000412640 PBRM1Q86U86 1689 aa17.51■□□□□ 0.39
SOX9-AS1-201ENST00000412640 KDM6BO15054 1643 aa17.49■□□□□ 0.39
SOX9-AS1-201ENST00000412640 ABCC10Q5T3U5 1492 aa17.48■□□□□ 0.39
SOX9-AS1-201ENST00000412640 CUX1P39880 1505 aa17.44■□□□□ 0.38
SOX9-AS1-201ENST00000412640 GRIN2AQ12879 1464 aa17.44■□□□□ 0.38
SOX9-AS1-201ENST00000412640 HECW2Q9P2P5 1572 aa17.41■□□□□ 0.38
SOX9-AS1-201ENST00000412640 NPM1P06748 294 aaKnown RBP eCLIP17.4■□□□□ 0.38
SOX9-AS1-201ENST00000412640 DIP2BQ9P265 1576 aa17.4■□□□□ 0.38
SOX9-AS1-201ENST00000412640 SHROOM2Q13796 1616 aa17.39■□□□□ 0.38
SOX9-AS1-201ENST00000412640 NUP160Q12769 1436 aa17.39■□□□□ 0.38
SOX9-AS1-201ENST00000412640 FBXO41Q8TF61 875 aa17.38■□□□□ 0.37
SOX9-AS1-201ENST00000412640 ADGRL1O94910 1474 aa17.37■□□□□ 0.37
SOX9-AS1-201ENST00000412640 TSPOAP1O95153 1857 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms