RNA–Protein interactions for RNA: ENST00000412507.1

TRIM56-202, Transcript of tripartite motif containing 56, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene TRIM56, Length 1,129 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-202ENST00000412507 NISCHQ9Y2I1 1504 aa46.15■■■■■ 4.98
TRIM56-202ENST00000412507 CCDC180Q9P1Z9 1646 aa41.19■■■■■ 4.18
TRIM56-202ENST00000412507 ABCC9O60706 1549 aa40.43■■■■■ 4.06
TRIM56-202ENST00000412507 RB1CC1Q8TDY2 1594 aa38.81■■■■□ 3.8
TRIM56-202ENST00000412507 NACADO15069 1562 aa38.7■■■■□ 3.79
TRIM56-202ENST00000412507 DCAF8L2P0C7V8 631 aa38.64■■■■□ 3.78
TRIM56-202ENST00000412507 ZCCHC6Q5VYS8 1495 aaKnown RBP38.4■■■■□ 3.74
TRIM56-202ENST00000412507 MYO15BQ96JP2 1530 aa38.36■■■■□ 3.73
TRIM56-202ENST00000412507 DCAF1Q9Y4B6 1507 aa38.14■■■■□ 3.7
TRIM56-202ENST00000412507 UNC13AQ9UPW8 1703 aa38.13■■■■□ 3.69
TRIM56-202ENST00000412507 PABPN1Q86U42 306 aaKnown RBP eCLIP37.72■■■■□ 3.63
TRIM56-202ENST00000412507 BICRAQ9NZM4 1560 aa37.68■■■■□ 3.62
TRIM56-202ENST00000412507 SCRIBQ14160 1630 aa37.58■■■■□ 3.61
TRIM56-202ENST00000412507 DNAJC5BQ9UF47 199 aa37.26■■■■□ 3.56
TRIM56-202ENST00000412507 SHROOM4Q9ULL8 1493 aa37.14■■■■□ 3.54
TRIM56-202ENST00000412507 EIF4G1Q04637 1599 aaKnown RBP36.67■■■■□ 3.46
TRIM56-202ENST00000412507 CC2D2AQ9P2K1 1620 aa36.6■■■■□ 3.45
TRIM56-202ENST00000412507 CECR2Q9BXF3 1484 aa36.32■■■■□ 3.41
TRIM56-202ENST00000412507 SMARCA4P51532 1647 aa35.9■■■■□ 3.34
TRIM56-202ENST00000412507 BAZ1AQ9NRL2 1556 aaPredicted RBP35.79■■■■□ 3.32
TRIM56-202ENST00000412507 ATAD2BQ9ULI0 1458 aa35.68■■■■□ 3.3
TRIM56-202ENST00000412507 NCAPD3P42695 1498 aa35.67■■■■□ 3.3
TRIM56-202ENST00000412507 SMARCA2P51531 1590 aa35.65■■■■□ 3.3
TRIM56-202ENST00000412507 MROH2BQ7Z745 1585 aa35.59■■■■□ 3.29
TRIM56-202ENST00000412507 HMGXB3Q12766 1538 aa35.52■■■■□ 3.28
TRIM56-202ENST00000412507 PEG3Q9GZU2 1588 aa35.51■■■■□ 3.27
TRIM56-202ENST00000412507 BAZ1BQ9UIG0 1483 aaKnown RBP35.4■■■■□ 3.26
TRIM56-202ENST00000412507 WIZO95785 1651 aa35.27■■■■□ 3.24
TRIM56-202ENST00000412507 RSF1Q96T23 1441 aaPredicted RBP35.07■■■■□ 3.21
TRIM56-202ENST00000412507 NESP48681 1621 aa34.95■■■■□ 3.19
TRIM56-202ENST00000412507 ERCC6Q03468 1493 aa34.84■■■■□ 3.17
TRIM56-202ENST00000412507 LAMC3Q9Y6N6 1575 aa34.82■■■■□ 3.16
TRIM56-202ENST00000412507 TOP2AP11388 1531 aaKnown RBP34.81■■■■□ 3.16
TRIM56-202ENST00000412507 KIF21AQ7Z4S6 1674 aa34.64■■■■□ 3.14
TRIM56-202ENST00000412507 CADPSQ9ULU8 1353 aa34.62■■■■□ 3.13
TRIM56-202ENST00000412507 PDS5BQ9NTI5 1447 aa34.53■■■■□ 3.12
TRIM56-202ENST00000412507 CUX2O14529 1486 aa34.52■■■■□ 3.12
TRIM56-202ENST00000412507 THOC2Q8NI27 1593 aaKnown RBP34.49■■■■□ 3.11
TRIM56-202ENST00000412507 CCDC88BA6NC98 1476 aa34.39■■■■□ 3.1
TRIM56-202ENST00000412507 CFTRP13569 1480 aa34.39■■■■□ 3.1
TRIM56-202ENST00000412507 PRDM2Q13029 1718 aa34.33■■■■□ 3.09
TRIM56-202ENST00000412507 FANCD2Q9BXW9 1451 aa34.26■■■■□ 3.07
TRIM56-202ENST00000412507 CEP164Q9UPV0 1460 aa34.24■■■■□ 3.07
TRIM56-202ENST00000412507 MRC2Q9UBG0 1479 aa34.22■■■■□ 3.07
TRIM56-202ENST00000412507 WDR62O43379 1518 aa34.13■■■■□ 3.05
TRIM56-202ENST00000412507 SUPT5HO00267 1087 aaKnown RBP34.08■■■■□ 3.05
TRIM56-202ENST00000412507 URB2Q14146 1524 aaKnown RBP33.95■■■■□ 3.03
TRIM56-202ENST00000412507 TOPBP1Q92547 1522 aa33.71■■■□□ 2.99
TRIM56-202ENST00000412507 DNMBPQ6XZF7 1577 aa33.67■■■□□ 2.98
TRIM56-202ENST00000412507 DNAJC5Q9H3Z4 198 aa33.66■■■□□ 2.98
TRIM56-202ENST00000412507 ABCC8Q09428 1581 aa33.65■■■□□ 2.98
TRIM56-202ENST00000412507 IFT140Q96RY7 1462 aa33.5■■■□□ 2.95
TRIM56-202ENST00000412507 ZNF608Q9ULD9 1512 aaPredicted RBP33.41■■■□□ 2.94
TRIM56-202ENST00000412507 POLA1P09884 1462 aaPredicted RBP33.4■■■□□ 2.94
TRIM56-202ENST00000412507 TARBP1Q13395 1621 aaKnown RBP33.39■■■□□ 2.94
TRIM56-202ENST00000412507 CUX1P39880 1505 aa33.39■■■□□ 2.94
TRIM56-202ENST00000412507 EIF4G3O43432 1585 aaKnown RBP33.32■■■□□ 2.92
TRIM56-202ENST00000412507 FGD5Q6ZNL6 1462 aa33.31■■■□□ 2.92
TRIM56-202ENST00000412507 RAD54L2Q9Y4B4 1467 aa33.28■■■□□ 2.92
TRIM56-202ENST00000412507 SOGA1O94964 1423 aa33.24■■■□□ 2.91
TRIM56-202ENST00000412507 AQRO60306 1485 aaKnown RBP eCLIP33.19■■■□□ 2.9
TRIM56-202ENST00000412507 WDR97A6NE52 1622 aa33.13■■■□□ 2.89
TRIM56-202ENST00000412507 BIVM-ERCC5R4GMW8 1640 aa33.12■■■□□ 2.89
TRIM56-202ENST00000412507 TDRD9Q8NDG6 1382 aaKnown RBP33.09■■■□□ 2.89
TRIM56-202ENST00000412507 TOP2BQ02880 1626 aa33.08■■■□□ 2.89
TRIM56-202ENST00000412507 SYNJ1O43426 1573 aa33.08■■■□□ 2.89
TRIM56-202ENST00000412507 WRNQ14191 1432 aaPredicted RBP eCLIP33.07■■■□□ 2.883e-7■■□□□ 13.1
TRIM56-202ENST00000412507 OSCARQ8IYS5 282 aa33.04■■■□□ 2.88
TRIM56-202ENST00000412507 CHD1O14646 1710 aa33.02■■■□□ 2.88
TRIM56-202ENST00000412507 PBRM1Q86U86 1689 aa32.95■■■□□ 2.87
TRIM56-202ENST00000412507 ABCA10Q8WWZ4 1543 aa32.95■■■□□ 2.87
TRIM56-202ENST00000412507 ABCA5Q8WWZ7 1642 aa32.89■■■□□ 2.86
TRIM56-202ENST00000412507 SNAPC4Q5SXM2 1469 aa32.88■■■□□ 2.85
TRIM56-202ENST00000412507 GRIN2BQ13224 1484 aa32.87■■■□□ 2.85
TRIM56-202ENST00000412507 GAPVD1Q14C86 1478 aa32.86■■■□□ 2.85
TRIM56-202ENST00000412507 FBLN2P98095 1184 aa32.82■■■□□ 2.84
TRIM56-202ENST00000412507 MAGI1Q96QZ7 1491 aaPredicted RBP32.8■■■□□ 2.84
TRIM56-202ENST00000412507 SYNJ2O15056 1496 aa32.68■■■□□ 2.82
TRIM56-202ENST00000412507 CHMP7Q8WUX9 453 aaPredicted RBP32.68■■■□□ 2.82
TRIM56-202ENST00000412507 RIMBP3CA6NJZ7 1639 aa32.65■■■□□ 2.82
TRIM56-202ENST00000412507 RIMBP3BA6NNM3 1639 aa32.65■■■□□ 2.82
TRIM56-202ENST00000412507 RIMBP3Q9UFD9 1639 aa32.65■■■□□ 2.82
TRIM56-202ENST00000412507 ADAMTS12P58397 1594 aa32.58■■■□□ 2.81
TRIM56-202ENST00000412507 ARHGEF11O15085 1522 aa32.56■■■□□ 2.8
TRIM56-202ENST00000412507 ERICH3Q5RHP9 1530 aa32.56■■■□□ 2.8
TRIM56-202ENST00000412507 CLASP1Q7Z460 1538 aa32.53■■■□□ 2.8
TRIM56-202ENST00000412507 TRIM41Q8WV44 630 aa32.53■■■□□ 2.8
TRIM56-202ENST00000412507 GRIN2AQ12879 1464 aa32.47■■■□□ 2.79
TRIM56-202ENST00000412507 FHAD1B1AJZ9 1412 aa32.45■■■□□ 2.79
TRIM56-202ENST00000412507 KIF27Q86VH2 1401 aa32.38■■■□□ 2.77
TRIM56-202ENST00000412507 CEP170Q5SW79 1584 aa32.36■■■□□ 2.77
TRIM56-202ENST00000412507 NUP160Q12769 1436 aa32.31■■■□□ 2.76
TRIM56-202ENST00000412507 CUL7Q14999 1698 aa32.29■■■□□ 2.76
TRIM56-202ENST00000412507 ARAP1Q96P48 1450 aa32.28■■■□□ 2.76
TRIM56-202ENST00000412507 IGF1RP08069 1367 aa32.27■■■□□ 2.76
TRIM56-202ENST00000412507 CYB5RLQ6IPT4 315 aa32.24■■■□□ 2.75
TRIM56-202ENST00000412507 SHROOM2Q13796 1616 aa32.16■■■□□ 2.74
TRIM56-202ENST00000412507 ERCC6L2Q5T890 1561 aa32.12■■■□□ 2.73
TRIM56-202ENST00000412507 RUSC2Q8N2Y8 1516 aa32.11■■■□□ 2.73
TRIM56-202ENST00000412507 CARMIL1Q5VZK9 1371 aa32.08■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms