RNA–Protein interactions for RNA: ENST00000412328.5

HSPG2-204, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 828 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-204ENST00000412328 NISCHQ9Y2I1 1504 aa43.27■■■■■ 4.52
HSPG2-204ENST00000412328 CCDC180Q9P1Z9 1646 aa38.76■■■■□ 3.8
HSPG2-204ENST00000412328 ABCC9O60706 1549 aa37.81■■■■□ 3.64
HSPG2-204ENST00000412328 RB1CC1Q8TDY2 1594 aa36.39■■■■□ 3.42
HSPG2-204ENST00000412328 NACADO15069 1562 aa36.31■■■■□ 3.4
HSPG2-204ENST00000412328 MYO15BQ96JP2 1530 aa36.09■■■■□ 3.37
HSPG2-204ENST00000412328 ZCCHC6Q5VYS8 1495 aaKnown RBP36.08■■■■□ 3.37
HSPG2-204ENST00000412328 UNC13AQ9UPW8 1703 aa35.89■■■■□ 3.34
HSPG2-204ENST00000412328 DCAF1Q9Y4B6 1507 aa35.87■■■■□ 3.33
HSPG2-204ENST00000412328 DCAF8L2P0C7V8 631 aa35.71■■■■□ 3.31
HSPG2-204ENST00000412328 BICRAQ9NZM4 1560 aa35.45■■■■□ 3.27
HSPG2-204ENST00000412328 SCRIBQ14160 1630 aa35.2■■■■□ 3.23
HSPG2-204ENST00000412328 PABPN1Q86U42 306 aaKnown RBP eCLIP35.12■■■■□ 3.21
HSPG2-204ENST00000412328 SHROOM4Q9ULL8 1493 aa34.98■■■■□ 3.19
HSPG2-204ENST00000412328 DNAJC5BQ9UF47 199 aa34.83■■■■□ 3.17
HSPG2-204ENST00000412328 EIF4G1Q04637 1599 aaKnown RBP34.44■■■■□ 3.1
HSPG2-204ENST00000412328 CC2D2AQ9P2K1 1620 aa34.34■■■■□ 3.09
HSPG2-204ENST00000412328 CECR2Q9BXF3 1484 aa34■■■■□ 3.03
HSPG2-204ENST00000412328 SMARCA4P51532 1647 aa33.71■■■□□ 2.99
HSPG2-204ENST00000412328 BAZ1AQ9NRL2 1556 aaPredicted RBP33.55■■■□□ 2.96
HSPG2-204ENST00000412328 NCAPD3P42695 1498 aa33.44■■■□□ 2.94
HSPG2-204ENST00000412328 ATAD2BQ9ULI0 1458 aa33.44■■■□□ 2.94
HSPG2-204ENST00000412328 PEG3Q9GZU2 1588 aa33.43■■■□□ 2.94
HSPG2-204ENST00000412328 SMARCA2P51531 1590 aa33.41■■■□□ 2.94
HSPG2-204ENST00000412328 HMGXB3Q12766 1538 aa33.39■■■□□ 2.94
HSPG2-204ENST00000412328 MROH2BQ7Z745 1585 aa33.36■■■□□ 2.93
HSPG2-204ENST00000412328 BAZ1BQ9UIG0 1483 aaKnown RBP33.12■■■□□ 2.89
HSPG2-204ENST00000412328 WIZO95785 1651 aa33.06■■■□□ 2.88
HSPG2-204ENST00000412328 RSF1Q96T23 1441 aaPredicted RBP32.83■■■□□ 2.85
HSPG2-204ENST00000412328 NESP48681 1621 aa32.74■■■□□ 2.83
HSPG2-204ENST00000412328 LAMC3Q9Y6N6 1575 aa32.68■■■□□ 2.82
HSPG2-204ENST00000412328 TOP2AP11388 1531 aaKnown RBP32.66■■■□□ 2.82
HSPG2-204ENST00000412328 KIF21AQ7Z4S6 1674 aa32.53■■■□□ 2.8
HSPG2-204ENST00000412328 ERCC6Q03468 1493 aa32.52■■■□□ 2.8
HSPG2-204ENST00000412328 THOC2Q8NI27 1593 aaKnown RBP32.48■■■□□ 2.79
HSPG2-204ENST00000412328 CUX2O14529 1486 aa32.39■■■□□ 2.78
HSPG2-204ENST00000412328 CADPSQ9ULU8 1353 aa32.37■■■□□ 2.77
HSPG2-204ENST00000412328 PRDM2Q13029 1718 aa32.31■■■□□ 2.76
HSPG2-204ENST00000412328 PDS5BQ9NTI5 1447 aa32.26■■■□□ 2.76
HSPG2-204ENST00000412328 CFTRP13569 1480 aa32.25■■■□□ 2.75
HSPG2-204ENST00000412328 CCDC88BA6NC98 1476 aa32.16■■■□□ 2.74
HSPG2-204ENST00000412328 WDR62O43379 1518 aa32.09■■■□□ 2.73
HSPG2-204ENST00000412328 MRC2Q9UBG0 1479 aa32.07■■■□□ 2.72
HSPG2-204ENST00000412328 FANCD2Q9BXW9 1451 aa32.06■■■□□ 2.72
HSPG2-204ENST00000412328 CEP164Q9UPV0 1460 aa32.05■■■□□ 2.72
HSPG2-204ENST00000412328 URB2Q14146 1524 aaKnown RBP31.85■■■□□ 2.69
HSPG2-204ENST00000412328 DNMBPQ6XZF7 1577 aa31.59■■■□□ 2.65
HSPG2-204ENST00000412328 TOPBP1Q92547 1522 aa31.59■■■□□ 2.65
HSPG2-204ENST00000412328 SUPT5HO00267 1087 aaKnown RBP31.51■■■□□ 2.63
HSPG2-204ENST00000412328 ABCC8Q09428 1581 aa31.47■■■□□ 2.63
HSPG2-204ENST00000412328 DNAJC5Q9H3Z4 198 aa31.44■■■□□ 2.62
HSPG2-204ENST00000412328 TARBP1Q13395 1621 aaKnown RBP31.39■■■□□ 2.62
HSPG2-204ENST00000412328 IFT140Q96RY7 1462 aa31.38■■■□□ 2.61
HSPG2-204ENST00000412328 CUX1P39880 1505 aa31.33■■■□□ 2.61
HSPG2-204ENST00000412328 ZNF608Q9ULD9 1512 aaPredicted RBP31.31■■■□□ 2.6
HSPG2-204ENST00000412328 POLA1P09884 1462 aaPredicted RBP31.31■■■□□ 2.6
HSPG2-204ENST00000412328 EIF4G3O43432 1585 aaKnown RBP31.3■■■□□ 2.6
HSPG2-204ENST00000412328 WDR97A6NE52 1622 aa31.23■■■□□ 2.59
HSPG2-204ENST00000412328 FGD5Q6ZNL6 1462 aa31.19■■■□□ 2.58
HSPG2-204ENST00000412328 BIVM-ERCC5R4GMW8 1640 aa31.12■■■□□ 2.57
HSPG2-204ENST00000412328 RAD54L2Q9Y4B4 1467 aa31.11■■■□□ 2.57
HSPG2-204ENST00000412328 TOP2BQ02880 1626 aa31.04■■■□□ 2.56
HSPG2-204ENST00000412328 SYNJ1O43426 1573 aa31.04■■■□□ 2.56
HSPG2-204ENST00000412328 CHD1O14646 1710 aa31.01■■■□□ 2.55
HSPG2-204ENST00000412328 SOGA1O94964 1423 aa31■■■□□ 2.55
HSPG2-204ENST00000412328 AQRO60306 1485 aaKnown RBP eCLIP31■■■□□ 2.551e-6■■■□□ 17.7
HSPG2-204ENST00000412328 PBRM1Q86U86 1689 aa30.95■■■□□ 2.55
HSPG2-204ENST00000412328 ABCA5Q8WWZ7 1642 aa30.94■■■□□ 2.54
HSPG2-204ENST00000412328 WRNQ14191 1432 aaPredicted RBP eCLIP30.9■■■□□ 2.54
HSPG2-204ENST00000412328 ABCA10Q8WWZ4 1543 aa30.89■■■□□ 2.54
HSPG2-204ENST00000412328 TDRD9Q8NDG6 1382 aaKnown RBP30.86■■■□□ 2.53
HSPG2-204ENST00000412328 SNAPC4Q5SXM2 1469 aa30.79■■■□□ 2.52
HSPG2-204ENST00000412328 GRIN2BQ13224 1484 aa30.76■■■□□ 2.51
HSPG2-204ENST00000412328 MAGI1Q96QZ7 1491 aaPredicted RBP30.75■■■□□ 2.51
HSPG2-204ENST00000412328 OSCARQ8IYS5 282 aa30.74■■■□□ 2.51
HSPG2-204ENST00000412328 GAPVD1Q14C86 1478 aa30.72■■■□□ 2.51
HSPG2-204ENST00000412328 RIMBP3CA6NJZ7 1639 aa30.64■■■□□ 2.5
HSPG2-204ENST00000412328 RIMBP3BA6NNM3 1639 aa30.64■■■□□ 2.5
HSPG2-204ENST00000412328 RIMBP3Q9UFD9 1639 aa30.64■■■□□ 2.5
HSPG2-204ENST00000412328 ADAMTS12P58397 1594 aa30.62■■■□□ 2.49
HSPG2-204ENST00000412328 SYNJ2O15056 1496 aa30.62■■■□□ 2.49
HSPG2-204ENST00000412328 CLASP1Q7Z460 1538 aa30.61■■■□□ 2.49
HSPG2-204ENST00000412328 ARHGEF11O15085 1522 aa30.54■■■□□ 2.48
HSPG2-204ENST00000412328 ERICH3Q5RHP9 1530 aa30.53■■■□□ 2.48
HSPG2-204ENST00000412328 GRIN2AQ12879 1464 aa30.42■■■□□ 2.46
HSPG2-204ENST00000412328 FBLN2P98095 1184 aa30.4■■■□□ 2.46
HSPG2-204ENST00000412328 CEP170Q5SW79 1584 aa30.38■■■□□ 2.45
HSPG2-204ENST00000412328 FHAD1B1AJZ9 1412 aa30.35■■■□□ 2.45
HSPG2-204ENST00000412328 CHMP7Q8WUX9 453 aaPredicted RBP30.34■■■□□ 2.45
HSPG2-204ENST00000412328 NUP160Q12769 1436 aa30.32■■■□□ 2.44
HSPG2-204ENST00000412328 ARAP1Q96P48 1450 aa30.31■■■□□ 2.44
HSPG2-204ENST00000412328 CUL7Q14999 1698 aa30.29■■■□□ 2.44
HSPG2-204ENST00000412328 SHROOM2Q13796 1616 aa30.27■■■□□ 2.44
HSPG2-204ENST00000412328 KIF27Q86VH2 1401 aa30.22■■■□□ 2.43
HSPG2-204ENST00000412328 RUSC2Q8N2Y8 1516 aa30.21■■■□□ 2.43
HSPG2-204ENST00000412328 TRIM41Q8WV44 630 aa30.19■■■□□ 2.42
HSPG2-204ENST00000412328 ERCC6L2Q5T890 1561 aa30.14■■■□□ 2.42
HSPG2-204ENST00000412328 IGF1RP08069 1367 aa30.13■■■□□ 2.41
HSPG2-204ENST00000412328 CYB5RLQ6IPT4 315 aa29.94■■■□□ 2.38
HSPG2-204ENST00000412328 CARMIL1Q5VZK9 1371 aa29.9■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms