RNA–Protein interactions for RNA: ENST00000412274.6

DDR1-230, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 2

Gene DDR1, Length 496 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-230ENST00000412274 NISCHQ9Y2I1 1504 aa39.54■■■■□ 3.92
DDR1-230ENST00000412274 CCDC180Q9P1Z9 1646 aa35.28■■■■□ 3.24
DDR1-230ENST00000412274 ABCC9O60706 1549 aa34.55■■■■□ 3.12
DDR1-230ENST00000412274 RB1CC1Q8TDY2 1594 aa33.29■■■□□ 2.92
DDR1-230ENST00000412274 NACADO15069 1562 aa33.23■■■□□ 2.91
DDR1-230ENST00000412274 DCAF8L2P0C7V8 631 aa33.05■■■□□ 2.88
DDR1-230ENST00000412274 MYO15BQ96JP2 1530 aa33.03■■■□□ 2.88
DDR1-230ENST00000412274 ZCCHC6Q5VYS8 1495 aaKnown RBP32.88■■■□□ 2.85
DDR1-230ENST00000412274 DCAF1Q9Y4B6 1507 aa32.8■■■□□ 2.84
DDR1-230ENST00000412274 UNC13AQ9UPW8 1703 aa32.39■■■□□ 2.78
DDR1-230ENST00000412274 PABPN1Q86U42 306 aaKnown RBP eCLIP32.23■■■□□ 2.75
DDR1-230ENST00000412274 BICRAQ9NZM4 1560 aa32.17■■■□□ 2.74
DDR1-230ENST00000412274 SHROOM4Q9ULL8 1493 aa32.04■■■□□ 2.72
DDR1-230ENST00000412274 SCRIBQ14160 1630 aa32.04■■■□□ 2.72
DDR1-230ENST00000412274 DNAJC5BQ9UF47 199 aa31.81■■■□□ 2.68
DDR1-230ENST00000412274 EIF4G1Q04637 1599 aaKnown RBP31.39■■■□□ 2.61
DDR1-230ENST00000412274 CC2D2AQ9P2K1 1620 aa31.27■■■□□ 2.6
DDR1-230ENST00000412274 CECR2Q9BXF3 1484 aa31.12■■■□□ 2.57
DDR1-230ENST00000412274 BAZ1AQ9NRL2 1556 aaPredicted RBP30.69■■■□□ 2.5
DDR1-230ENST00000412274 SMARCA4P51532 1647 aa30.69■■■□□ 2.5
DDR1-230ENST00000412274 NCAPD3P42695 1498 aa30.64■■■□□ 2.5
DDR1-230ENST00000412274 SMARCA2P51531 1590 aa30.61■■■□□ 2.49
DDR1-230ENST00000412274 ATAD2BQ9ULI0 1458 aa30.58■■■□□ 2.49
DDR1-230ENST00000412274 HMGXB3Q12766 1538 aa30.47■■■□□ 2.47
DDR1-230ENST00000412274 PEG3Q9GZU2 1588 aa30.45■■■□□ 2.47
DDR1-230ENST00000412274 MROH2BQ7Z745 1585 aa30.39■■■□□ 2.46
DDR1-230ENST00000412274 BAZ1BQ9UIG0 1483 aaKnown RBP30.33■■■□□ 2.45
DDR1-230ENST00000412274 WIZO95785 1651 aa30.04■■■□□ 2.4
DDR1-230ENST00000412274 RSF1Q96T23 1441 aaPredicted RBP30.02■■■□□ 2.4
DDR1-230ENST00000412274 ERCC6Q03468 1493 aa29.87■■■□□ 2.37
DDR1-230ENST00000412274 LAMC3Q9Y6N6 1575 aa29.87■■■□□ 2.37
DDR1-230ENST00000412274 NESP48681 1621 aa29.81■■■□□ 2.36
DDR1-230ENST00000412274 TOP2AP11388 1531 aaKnown RBP29.79■■■□□ 2.36
DDR1-230ENST00000412274 CADPSQ9ULU8 1353 aa29.74■■■□□ 2.35
DDR1-230ENST00000412274 PDS5BQ9NTI5 1447 aa29.71■■■□□ 2.35
DDR1-230ENST00000412274 CUX2O14529 1486 aa29.68■■■□□ 2.34
DDR1-230ENST00000412274 CFTRP13569 1480 aa29.51■■■□□ 2.31
DDR1-230ENST00000412274 KIF21AQ7Z4S6 1674 aa29.48■■■□□ 2.31
DDR1-230ENST00000412274 THOC2Q8NI27 1593 aaKnown RBP29.45■■■□□ 2.31
DDR1-230ENST00000412274 CCDC88BA6NC98 1476 aa29.42■■■□□ 2.3
DDR1-230ENST00000412274 CEP164Q9UPV0 1460 aa29.36■■■□□ 2.29
DDR1-230ENST00000412274 FANCD2Q9BXW9 1451 aa29.35■■■□□ 2.29
DDR1-230ENST00000412274 MRC2Q9UBG0 1479 aa29.34■■■□□ 2.29
DDR1-230ENST00000412274 PRDM2Q13029 1718 aa29.25■■■□□ 2.27
DDR1-230ENST00000412274 WDR62O43379 1518 aa29.25■■■□□ 2.27
DDR1-230ENST00000412274 SUPT5HO00267 1087 aaKnown RBP29.08■■■□□ 2.25
DDR1-230ENST00000412274 URB2Q14146 1524 aaKnown RBP29.02■■■□□ 2.24
DDR1-230ENST00000412274 ABCC8Q09428 1581 aa28.99■■■□□ 2.23
DDR1-230ENST00000412274 DNAJC5Q9H3Z4 198 aa28.94■■■□□ 2.22
DDR1-230ENST00000412274 TOPBP1Q92547 1522 aa28.85■■■□□ 2.21
DDR1-230ENST00000412274 DNMBPQ6XZF7 1577 aa28.83■■■□□ 2.21
DDR1-230ENST00000412274 IFT140Q96RY7 1462 aa28.78■■■□□ 2.2
DDR1-230ENST00000412274 POLA1P09884 1462 aaPredicted RBP28.59■■■□□ 2.17
DDR1-230ENST00000412274 TARBP1Q13395 1621 aaKnown RBP28.54■■■□□ 2.16
DDR1-230ENST00000412274 ZNF608Q9ULD9 1512 aaPredicted RBP28.53■■■□□ 2.16
DDR1-230ENST00000412274 CUX1P39880 1505 aa28.53■■■□□ 2.16
DDR1-230ENST00000412274 SOGA1O94964 1423 aa28.51■■■□□ 2.15
DDR1-230ENST00000412274 FGD5Q6ZNL6 1462 aa28.48■■■□□ 2.15
DDR1-230ENST00000412274 EIF4G3O43432 1585 aaKnown RBP28.45■■■□□ 2.15
DDR1-230ENST00000412274 WDR97A6NE52 1622 aa28.45■■■□□ 2.14
DDR1-230ENST00000412274 OSCARQ8IYS5 282 aa28.43■■■□□ 2.14
DDR1-230ENST00000412274 RAD54L2Q9Y4B4 1467 aa28.4■■■□□ 2.14
DDR1-230ENST00000412274 AQRO60306 1485 aaKnown RBP eCLIP28.37■■■□□ 2.132e-7■■■■■ 31.6
DDR1-230ENST00000412274 WRNQ14191 1432 aaPredicted RBP eCLIP28.35■■■□□ 2.13
DDR1-230ENST00000412274 TDRD9Q8NDG6 1382 aaKnown RBP28.31■■■□□ 2.12
DDR1-230ENST00000412274 TOP2BQ02880 1626 aa28.3■■■□□ 2.12
DDR1-230ENST00000412274 BIVM-ERCC5R4GMW8 1640 aa28.29■■■□□ 2.12
DDR1-230ENST00000412274 ABCA10Q8WWZ4 1543 aa28.26■■■□□ 2.11
DDR1-230ENST00000412274 GRIN2BQ13224 1484 aa28.21■■■□□ 2.11
DDR1-230ENST00000412274 SYNJ1O43426 1573 aa28.2■■■□□ 2.1
DDR1-230ENST00000412274 MAGI1Q96QZ7 1491 aaPredicted RBP28.18■■■□□ 2.1
DDR1-230ENST00000412274 GAPVD1Q14C86 1478 aa28.17■■■□□ 2.1
DDR1-230ENST00000412274 SNAPC4Q5SXM2 1469 aa28.13■■■□□ 2.09
DDR1-230ENST00000412274 ABCA5Q8WWZ7 1642 aa28.11■■■□□ 2.09
DDR1-230ENST00000412274 CHD1O14646 1710 aa28.1■■■□□ 2.09
DDR1-230ENST00000412274 FBLN2P98095 1184 aa28.1■■■□□ 2.09
DDR1-230ENST00000412274 PBRM1Q86U86 1689 aa28.07■■■□□ 2.08
DDR1-230ENST00000412274 CHMP7Q8WUX9 453 aaPredicted RBP28.07■■■□□ 2.08
DDR1-230ENST00000412274 SYNJ2O15056 1496 aa28.05■■■□□ 2.08
DDR1-230ENST00000412274 ERICH3Q5RHP9 1530 aa27.95■■■□□ 2.06
DDR1-230ENST00000412274 RIMBP3CA6NJZ7 1639 aa27.88■■■□□ 2.05
DDR1-230ENST00000412274 RIMBP3BA6NNM3 1639 aa27.88■■■□□ 2.05
DDR1-230ENST00000412274 RIMBP3Q9UFD9 1639 aa27.88■■■□□ 2.05
DDR1-230ENST00000412274 FHAD1B1AJZ9 1412 aa27.87■■■□□ 2.05
DDR1-230ENST00000412274 ARHGEF11O15085 1522 aa27.87■■■□□ 2.05
DDR1-230ENST00000412274 ADAMTS12P58397 1594 aa27.85■■■□□ 2.05
DDR1-230ENST00000412274 CLASP1Q7Z460 1538 aa27.84■■■□□ 2.05
DDR1-230ENST00000412274 TRIM41Q8WV44 630 aa27.81■■■□□ 2.04
DDR1-230ENST00000412274 KIF27Q86VH2 1401 aa27.81■■■□□ 2.04
DDR1-230ENST00000412274 GRIN2AQ12879 1464 aa27.81■■■□□ 2.04
DDR1-230ENST00000412274 NUP160Q12769 1436 aa27.71■■■□□ 2.03
DDR1-230ENST00000412274 IGF1RP08069 1367 aa27.68■■■□□ 2.02
DDR1-230ENST00000412274 CUL7Q14999 1698 aa27.65■■■□□ 2.02
DDR1-230ENST00000412274 CYB5RLQ6IPT4 315 aa27.63■■■□□ 2.01
DDR1-230ENST00000412274 CEP170Q5SW79 1584 aa27.63■■■□□ 2.01
DDR1-230ENST00000412274 ARAP1Q96P48 1450 aa27.61■■■□□ 2.01
DDR1-230ENST00000412274 CARMIL1Q5VZK9 1371 aa27.52■■■□□ 2
DDR1-230ENST00000412274 SHROOM2Q13796 1616 aa27.51■■□□□ 1.99
DDR1-230ENST00000412274 JPH4Q96JJ6 628 aa27.46■■□□□ 1.99
DDR1-230ENST00000412274 RUSC2Q8N2Y8 1516 aa27.44■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms