RNA–Protein interactions for RNA: ENST00000412141.1

LINC00963-201, long intergenic non-protein coding RNA 963, humanhuman

TSL 1 (best)

Gene LINC00963, Length 739 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-201ENST00000412141 NISCHQ9Y2I1 1504 aa28.5■■■□□ 2.15
LINC00963-201ENST00000412141 ABCC9O60706 1549 aa25.46■■□□□ 1.67
LINC00963-201ENST00000412141 CCDC180Q9P1Z9 1646 aa25.37■■□□□ 1.65
LINC00963-201ENST00000412141 DCAF8L2P0C7V8 631 aa24.25■■□□□ 1.47
LINC00963-201ENST00000412141 RB1CC1Q8TDY2 1594 aa24.17■■□□□ 1.46
LINC00963-201ENST00000412141 NACADO15069 1562 aa23.99■■□□□ 1.43
LINC00963-201ENST00000412141 DNAJC5BQ9UF47 199 aa23.94■■□□□ 1.42
LINC00963-201ENST00000412141 PABPN1Q86U42 306 aaKnown RBP eCLIP23.76■■□□□ 1.39
LINC00963-201ENST00000412141 MYO15BQ96JP2 1530 aa23.65■■□□□ 1.38
LINC00963-201ENST00000412141 ZCCHC6Q5VYS8 1495 aaKnown RBP23.63■■□□□ 1.37
LINC00963-201ENST00000412141 UNC13AQ9UPW8 1703 aa23.63■■□□□ 1.37
LINC00963-201ENST00000412141 BICRAQ9NZM4 1560 aa23.52■■□□□ 1.36
LINC00963-201ENST00000412141 DCAF1Q9Y4B6 1507 aa23.44■■□□□ 1.34
LINC00963-201ENST00000412141 SCRIBQ14160 1630 aa23.3■■□□□ 1.32
LINC00963-201ENST00000412141 SHROOM4Q9ULL8 1493 aa23.15■■□□□ 1.3
LINC00963-201ENST00000412141 CC2D2AQ9P2K1 1620 aa22.98■■□□□ 1.27
LINC00963-201ENST00000412141 EIF4G1Q04637 1599 aaKnown RBP22.93■■□□□ 1.26
LINC00963-201ENST00000412141 CECR2Q9BXF3 1484 aa22.92■■□□□ 1.26
LINC00963-201ENST00000412141 SMARCA4P51532 1647 aa22.17■■□□□ 1.14
LINC00963-201ENST00000412141 NCAPD3P42695 1498 aa22.16■■□□□ 1.14
LINC00963-201ENST00000412141 ATAD2BQ9ULI0 1458 aa22.16■■□□□ 1.14
LINC00963-201ENST00000412141 BAZ1AQ9NRL2 1556 aaPredicted RBP22.08■■□□□ 1.13
LINC00963-201ENST00000412141 SMARCA2P51531 1590 aa22.08■■□□□ 1.12
LINC00963-201ENST00000412141 MROH2BQ7Z745 1585 aa22.01■■□□□ 1.11
LINC00963-201ENST00000412141 HMGXB3Q12766 1538 aa22■■□□□ 1.11
LINC00963-201ENST00000412141 BAZ1BQ9UIG0 1483 aaKnown RBP21.98■■□□□ 1.11
LINC00963-201ENST00000412141 DNAJC5Q9H3Z4 198 aa21.97■■□□□ 1.11
LINC00963-201ENST00000412141 ERCC6Q03468 1493 aa21.96■■□□□ 1.11
LINC00963-201ENST00000412141 CUX2O14529 1486 aa21.93■■□□□ 1.1
LINC00963-201ENST00000412141 PEG3Q9GZU2 1588 aa21.87■■□□□ 1.09
LINC00963-201ENST00000412141 NESP48681 1621 aa21.86■■□□□ 1.09
LINC00963-201ENST00000412141 WIZO95785 1651 aa21.75■■□□□ 1.07
LINC00963-201ENST00000412141 LAMC3Q9Y6N6 1575 aa21.66■■□□□ 1.06
LINC00963-201ENST00000412141 THOC2Q8NI27 1593 aaKnown RBP21.65■■□□□ 1.06
LINC00963-201ENST00000412141 RSF1Q96T23 1441 aaPredicted RBP21.63■■□□□ 1.05
LINC00963-201ENST00000412141 KIF21AQ7Z4S6 1674 aa21.56■■□□□ 1.04
LINC00963-201ENST00000412141 CADPSQ9ULU8 1353 aa21.56■■□□□ 1.04
LINC00963-201ENST00000412141 PDS5BQ9NTI5 1447 aa21.55■■□□□ 1.04
LINC00963-201ENST00000412141 TOP2AP11388 1531 aaKnown RBP21.44■■□□□ 1.02
LINC00963-201ENST00000412141 MRC2Q9UBG0 1479 aa21.37■■□□□ 1.01
LINC00963-201ENST00000412141 WDR62O43379 1518 aa21.33■■□□□ 1
LINC00963-201ENST00000412141 CFTRP13569 1480 aa21.32■■□□□ 1
LINC00963-201ENST00000412141 FANCD2Q9BXW9 1451 aa21.32■■□□□ 1
LINC00963-201ENST00000412141 CEP164Q9UPV0 1460 aa21.3■■□□□ 1
LINC00963-201ENST00000412141 CCDC88BA6NC98 1476 aa21.26■□□□□ 0.99
LINC00963-201ENST00000412141 URB2Q14146 1524 aaKnown RBP21.12■□□□□ 0.97
LINC00963-201ENST00000412141 SUPT5HO00267 1087 aaKnown RBP21.05■□□□□ 0.96
LINC00963-201ENST00000412141 PRDM2Q13029 1718 aa21.01■□□□□ 0.95
LINC00963-201ENST00000412141 TRIM41Q8WV44 630 aa21.01■□□□□ 0.95
LINC00963-201ENST00000412141 TOPBP1Q92547 1522 aa20.93■□□□□ 0.94
LINC00963-201ENST00000412141 OSCARQ8IYS5 282 aa20.89■□□□□ 0.93
LINC00963-201ENST00000412141 ZNF608Q9ULD9 1512 aaPredicted RBP20.87■□□□□ 0.93
LINC00963-201ENST00000412141 IFT140Q96RY7 1462 aa20.85■□□□□ 0.93
LINC00963-201ENST00000412141 DNMBPQ6XZF7 1577 aa20.84■□□□□ 0.93
LINC00963-201ENST00000412141 ABCC8Q09428 1581 aa20.83■□□□□ 0.92
LINC00963-201ENST00000412141 EIF4G3O43432 1585 aaKnown RBP20.73■□□□□ 0.91
LINC00963-201ENST00000412141 AQRO60306 1485 aaKnown RBP eCLIP20.73■□□□□ 0.91
LINC00963-201ENST00000412141 POLA1P09884 1462 aaPredicted RBP20.73■□□□□ 0.91
LINC00963-201ENST00000412141 RAD54L2Q9Y4B4 1467 aa20.72■□□□□ 0.91
LINC00963-201ENST00000412141 SOGA1O94964 1423 aa20.69■□□□□ 0.9
LINC00963-201ENST00000412141 RIMBP3CA6NJZ7 1639 aa20.67■□□□□ 0.9
LINC00963-201ENST00000412141 RIMBP3BA6NNM3 1639 aa20.67■□□□□ 0.9
LINC00963-201ENST00000412141 TARBP1Q13395 1621 aaKnown RBP20.67■□□□□ 0.9
LINC00963-201ENST00000412141 RIMBP3Q9UFD9 1639 aa20.67■□□□□ 0.9
LINC00963-201ENST00000412141 FBLN2P98095 1184 aa20.67■□□□□ 0.9
LINC00963-201ENST00000412141 TDRD9Q8NDG6 1382 aaKnown RBP20.67■□□□□ 0.9
LINC00963-201ENST00000412141 CUX1P39880 1505 aa20.65■□□□□ 0.9
LINC00963-201ENST00000412141 FGD5Q6ZNL6 1462 aa20.65■□□□□ 0.9
LINC00963-201ENST00000412141 ARHGEF11O15085 1522 aa20.61■□□□□ 0.89
LINC00963-201ENST00000412141 CHD1O14646 1710 aa20.56■□□□□ 0.88
LINC00963-201ENST00000412141 SNAPC4Q5SXM2 1469 aa20.49■□□□□ 0.87
LINC00963-201ENST00000412141 CHMP7Q8WUX9 453 aaPredicted RBP20.48■□□□□ 0.87
LINC00963-201ENST00000412141 CYB5RLQ6IPT4 315 aa20.44■□□□□ 0.86
LINC00963-201ENST00000412141 GRIN2BQ13224 1484 aa20.43■□□□□ 0.86
LINC00963-201ENST00000412141 WDR97A6NE52 1622 aa20.42■□□□□ 0.86
LINC00963-201ENST00000412141 WRNQ14191 1432 aaPredicted RBP eCLIP20.42■□□□□ 0.86
LINC00963-201ENST00000412141 GAPVD1Q14C86 1478 aa20.41■□□□□ 0.86
LINC00963-201ENST00000412141 ARAP1Q96P48 1450 aa20.41■□□□□ 0.86
LINC00963-201ENST00000412141 ABCA10Q8WWZ4 1543 aa20.37■□□□□ 0.85
LINC00963-201ENST00000412141 MAGI1Q96QZ7 1491 aaPredicted RBP20.37■□□□□ 0.85
LINC00963-201ENST00000412141 SYNJ1O43426 1573 aa20.37■□□□□ 0.85
LINC00963-201ENST00000412141 CLASP1Q7Z460 1538 aa20.34■□□□□ 0.85
LINC00963-201ENST00000412141 TOP2BQ02880 1626 aa20.33■□□□□ 0.84
LINC00963-201ENST00000412141 SYNJ2O15056 1496 aa20.32■□□□□ 0.84
LINC00963-201ENST00000412141 PBRM1Q86U86 1689 aa20.31■□□□□ 0.84
LINC00963-201ENST00000412141 ABCA5Q8WWZ7 1642 aa20.3■□□□□ 0.84
LINC00963-201ENST00000412141 BIVM-ERCC5R4GMW8 1640 aa20.3■□□□□ 0.84
LINC00963-201ENST00000412141 TRHP20396 242 aaPredicted RBP20.21■□□□□ 0.83
LINC00963-201ENST00000412141 GRIN2AQ12879 1464 aa20.16■□□□□ 0.82
LINC00963-201ENST00000412141 ADAMTS12P58397 1594 aa20.14■□□□□ 0.81
LINC00963-201ENST00000412141 FHAD1B1AJZ9 1412 aa20.14■□□□□ 0.81
LINC00963-201ENST00000412141 ERICH3Q5RHP9 1530 aa20.1■□□□□ 0.81
LINC00963-201ENST00000412141 CEP170Q5SW79 1584 aa20.08■□□□□ 0.8
LINC00963-201ENST00000412141 NUP160Q12769 1436 aa20.06■□□□□ 0.8
LINC00963-201ENST00000412141 ERCC6L2Q5T890 1561 aa20.04■□□□□ 0.8
LINC00963-201ENST00000412141 KIF27Q86VH2 1401 aa20.01■□□□□ 0.79
LINC00963-201ENST00000412141 IGF1RP08069 1367 aa20■□□□□ 0.79
LINC00963-201ENST00000412141 JPH4Q96JJ6 628 aa19.97■□□□□ 0.79
LINC00963-201ENST00000412141 SHROOM2Q13796 1616 aa19.95■□□□□ 0.78
LINC00963-201ENST00000412141 PRG4Q92954 1404 aaPredicted RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 173.2 ms