RNA–Protein interactions for RNA: ENST00000411827.1

CDC42-204, Transcript of cell division cycle 42, humanhuman

TSL 3

Gene CDC42, Length 597 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42-204ENST00000411827 NISCHQ9Y2I1 1504 aa43.78■■■■■ 4.6
CDC42-204ENST00000411827 CCDC180Q9P1Z9 1646 aa38.64■■■■□ 3.78
CDC42-204ENST00000411827 ABCC9O60706 1549 aa36.97■■■■□ 3.51
CDC42-204ENST00000411827 ZCCHC6Q5VYS8 1495 aaKnown RBP36.62■■■■□ 3.45
CDC42-204ENST00000411827 DCAF1Q9Y4B6 1507 aa36.39■■■■□ 3.42
CDC42-204ENST00000411827 MYO15BQ96JP2 1530 aa36.31■■■■□ 3.4
CDC42-204ENST00000411827 DCAF8L2P0C7V8 631 aa36.22■■■■□ 3.39
CDC42-204ENST00000411827 NACADO15069 1562 aa36.2■■■■□ 3.39
CDC42-204ENST00000411827 RB1CC1Q8TDY2 1594 aa36.03■■■■□ 3.36
CDC42-204ENST00000411827 SCRIBQ14160 1630 aa35.16■■■■□ 3.22
CDC42-204ENST00000411827 UNC13AQ9UPW8 1703 aa35.01■■■■□ 3.19
CDC42-204ENST00000411827 SHROOM4Q9ULL8 1493 aa34.85■■■■□ 3.17
CDC42-204ENST00000411827 BICRAQ9NZM4 1560 aa34.78■■■■□ 3.16
CDC42-204ENST00000411827 PABPN1Q86U42 306 aaKnown RBP eCLIP34.65■■■■□ 3.14
CDC42-204ENST00000411827 DNAJC5BQ9UF47 199 aa34.53■■■■□ 3.12
CDC42-204ENST00000411827 BAZ1AQ9NRL2 1556 aaPredicted RBP33.94■■■■□ 3.02
CDC42-204ENST00000411827 CECR2Q9BXF3 1484 aa33.91■■■■□ 3.02
CDC42-204ENST00000411827 EIF4G1Q04637 1599 aaKnown RBP33.85■■■■□ 3.01
CDC42-204ENST00000411827 SMARCA4P51532 1647 aa33.78■■■■□ 3
CDC42-204ENST00000411827 MROH2BQ7Z745 1585 aa33.67■■■□□ 2.98
CDC42-204ENST00000411827 RSF1Q96T23 1441 aaPredicted RBP33.62■■■□□ 2.97
CDC42-204ENST00000411827 SMARCA2P51531 1590 aa33.52■■■□□ 2.96
CDC42-204ENST00000411827 PEG3Q9GZU2 1588 aa33.52■■■□□ 2.96
CDC42-204ENST00000411827 CC2D2AQ9P2K1 1620 aa33.5■■■□□ 2.95
CDC42-204ENST00000411827 ATAD2BQ9ULI0 1458 aa33.45■■■□□ 2.95
CDC42-204ENST00000411827 NCAPD3P42695 1498 aa33.39■■■□□ 2.94
CDC42-204ENST00000411827 WIZO95785 1651 aa33.29■■■□□ 2.92
CDC42-204ENST00000411827 HMGXB3Q12766 1538 aa33.28■■■□□ 2.92
CDC42-204ENST00000411827 SUPT5HO00267 1087 aaKnown RBP33.26■■■□□ 2.91
CDC42-204ENST00000411827 BAZ1BQ9UIG0 1483 aaKnown RBP33.23■■■□□ 2.91
CDC42-204ENST00000411827 TOP2AP11388 1531 aaKnown RBP33.12■■■□□ 2.89
CDC42-204ENST00000411827 CCDC88BA6NC98 1476 aa32.69■■■□□ 2.82
CDC42-204ENST00000411827 CADPSQ9ULU8 1353 aa32.45■■■□□ 2.78
CDC42-204ENST00000411827 CFTRP13569 1480 aa32.39■■■□□ 2.78
CDC42-204ENST00000411827 LAMC3Q9Y6N6 1575 aa32.37■■■□□ 2.77
CDC42-204ENST00000411827 PDS5BQ9NTI5 1447 aa32.18■■■□□ 2.74
CDC42-204ENST00000411827 NESP48681 1621 aa32.15■■■□□ 2.74
CDC42-204ENST00000411827 PRDM2Q13029 1718 aa32.12■■■□□ 2.73
CDC42-204ENST00000411827 FANCD2Q9BXW9 1451 aa32.02■■■□□ 2.72
CDC42-204ENST00000411827 CEP164Q9UPV0 1460 aa31.93■■■□□ 2.7
CDC42-204ENST00000411827 ERCC6Q03468 1493 aa31.9■■■□□ 2.7
CDC42-204ENST00000411827 KIF21AQ7Z4S6 1674 aa31.8■■■□□ 2.68
CDC42-204ENST00000411827 ABCC8Q09428 1581 aa31.79■■■□□ 2.68
CDC42-204ENST00000411827 MRC2Q9UBG0 1479 aa31.73■■■□□ 2.67
CDC42-204ENST00000411827 WRNQ14191 1432 aaPredicted RBP eCLIP31.72■■■□□ 2.67
CDC42-204ENST00000411827 DNMBPQ6XZF7 1577 aa31.62■■■□□ 2.65
CDC42-204ENST00000411827 URB2Q14146 1524 aaKnown RBP31.59■■■□□ 2.65
CDC42-204ENST00000411827 WDR62O43379 1518 aa31.58■■■□□ 2.65
CDC42-204ENST00000411827 CUX2O14529 1486 aa31.58■■■□□ 2.65
CDC42-204ENST00000411827 TOPBP1Q92547 1522 aa31.57■■■□□ 2.64
CDC42-204ENST00000411827 THOC2Q8NI27 1593 aaKnown RBP31.56■■■□□ 2.64
CDC42-204ENST00000411827 CUX1P39880 1505 aa31.56■■■□□ 2.64
CDC42-204ENST00000411827 TOP2BQ02880 1626 aa31.54■■■□□ 2.64
CDC42-204ENST00000411827 CHIC1Q5VXU3 224 aa31.52■■■□□ 2.64
CDC42-204ENST00000411827 BIVM-ERCC5R4GMW8 1640 aa31.51■■■□□ 2.63
CDC42-204ENST00000411827 TRIM41Q8WV44 630 aa31.5■■■□□ 2.63
CDC42-204ENST00000411827 SYNJ1O43426 1573 aa31.47■■■□□ 2.63
CDC42-204ENST00000411827 DNAJC5Q9H3Z4 198 aa31.47■■■□□ 2.63
CDC42-204ENST00000411827 FGD5Q6ZNL6 1462 aa31.36■■■□□ 2.61
CDC42-204ENST00000411827 POLA1P09884 1462 aaPredicted RBP31.34■■■□□ 2.61
CDC42-204ENST00000411827 SOGA1O94964 1423 aa31.28■■■□□ 2.6
CDC42-204ENST00000411827 IFT140Q96RY7 1462 aa31.27■■■□□ 2.6
CDC42-204ENST00000411827 ABCA10Q8WWZ4 1543 aa31.17■■■□□ 2.58
CDC42-204ENST00000411827 TARBP1Q13395 1621 aaKnown RBP31.14■■■□□ 2.58
CDC42-204ENST00000411827 RAD54L2Q9Y4B4 1467 aa31.13■■■□□ 2.57
CDC42-204ENST00000411827 WDR97A6NE52 1622 aa31.11■■■□□ 2.57
CDC42-204ENST00000411827 KIF27Q86VH2 1401 aa31.06■■■□□ 2.56
CDC42-204ENST00000411827 EEA1Q15075 1411 aa31.04■■■□□ 2.56
CDC42-204ENST00000411827 TDRD9Q8NDG6 1382 aaKnown RBP30.94■■■□□ 2.54
CDC42-204ENST00000411827 GAPVD1Q14C86 1478 aa30.93■■■□□ 2.54
CDC42-204ENST00000411827 ZNF608Q9ULD9 1512 aaPredicted RBP30.9■■■□□ 2.54
CDC42-204ENST00000411827 ABCA5Q8WWZ7 1642 aa30.9■■■□□ 2.54
CDC42-204ENST00000411827 AQRO60306 1485 aaKnown RBP eCLIP30.86■■■□□ 2.532e-6■■■■□ 23.2
CDC42-204ENST00000411827 GRIN2BQ13224 1484 aa30.85■■■□□ 2.53
CDC42-204ENST00000411827 EIF4G3O43432 1585 aaKnown RBP30.84■■■□□ 2.53
CDC42-204ENST00000411827 ERICH3Q5RHP9 1530 aa30.83■■■□□ 2.53
CDC42-204ENST00000411827 CSRNP3Q8WYN3 585 aa30.79■■■□□ 2.52
CDC42-204ENST00000411827 IGF1RP08069 1367 aa30.78■■■□□ 2.52
CDC42-204ENST00000411827 RUSC2Q8N2Y8 1516 aa30.77■■■□□ 2.52
CDC42-204ENST00000411827 MAGI1Q96QZ7 1491 aaPredicted RBP30.71■■■□□ 2.51
CDC42-204ENST00000411827 PBRM1Q86U86 1689 aa30.7■■■□□ 2.5
CDC42-204ENST00000411827 CUL7Q14999 1698 aa30.68■■■□□ 2.5
CDC42-204ENST00000411827 FAM9AQ8IZU1 332 aaPredicted RBP30.66■■■□□ 2.5
CDC42-204ENST00000411827 CARMIL1Q5VZK9 1371 aa30.64■■■□□ 2.5
CDC42-204ENST00000411827 FHAD1B1AJZ9 1412 aa30.64■■■□□ 2.49
CDC42-204ENST00000411827 SNAPC4Q5SXM2 1469 aa30.61■■■□□ 2.49
CDC42-204ENST00000411827 PRXQ9BXM0 1461 aa30.59■■■□□ 2.49
CDC42-204ENST00000411827 SYNJ2O15056 1496 aa30.56■■■□□ 2.48
CDC42-204ENST00000411827 ADAMTS12P58397 1594 aa30.55■■■□□ 2.48
CDC42-204ENST00000411827 RAPGEF2Q9Y4G8 1499 aa30.54■■■□□ 2.48
CDC42-204ENST00000411827 KIF21BO75037 1637 aa30.51■■■□□ 2.47
CDC42-204ENST00000411827 CHMP7Q8WUX9 453 aaPredicted RBP30.5■■■□□ 2.47
CDC42-204ENST00000411827 GRIN2AQ12879 1464 aa30.42■■■□□ 2.46
CDC42-204ENST00000411827 GOLGA3Q08378 1498 aa30.41■■■□□ 2.46
CDC42-204ENST00000411827 FBLN2P98095 1184 aa30.38■■■□□ 2.45
CDC42-204ENST00000411827 NUP160Q12769 1436 aa30.27■■■□□ 2.44
CDC42-204ENST00000411827 CHD1O14646 1710 aa30.27■■■□□ 2.44
CDC42-204ENST00000411827 UBTFP17480 764 aaKnown RBP30.26■■■□□ 2.43
CDC42-204ENST00000411827 OSCARQ8IYS5 282 aa30.22■■■□□ 2.43
CDC42-204ENST00000411827 TNIKQ9UKE5 1360 aa30.2■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms