RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 NISCHQ9Y2I1 1504 aa47.14■■■■■ 5.14
SF3A1-202ENST00000411423 CCDC180Q9P1Z9 1646 aa41.98■■■■■ 4.31
SF3A1-202ENST00000411423 ABCC9O60706 1549 aa41.5■■■■■ 4.23
SF3A1-202ENST00000411423 RB1CC1Q8TDY2 1594 aa39.67■■■■□ 3.94
SF3A1-202ENST00000411423 NACADO15069 1562 aa39.55■■■■□ 3.92
SF3A1-202ENST00000411423 DCAF8L2P0C7V8 631 aa39.47■■■■□ 3.91
SF3A1-202ENST00000411423 ZCCHC6Q5VYS8 1495 aaKnown RBP39.2■■■■□ 3.87
SF3A1-202ENST00000411423 MYO15BQ96JP2 1530 aa39.19■■■■□ 3.86
SF3A1-202ENST00000411423 DCAF1Q9Y4B6 1507 aa38.92■■■■□ 3.82
SF3A1-202ENST00000411423 UNC13AQ9UPW8 1703 aa38.89■■■■□ 3.82
SF3A1-202ENST00000411423 PABPN1Q86U42 306 aaKnown RBP eCLIP38.75■■■■□ 3.79
SF3A1-202ENST00000411423 BICRAQ9NZM4 1560 aa38.63■■■■□ 3.77
SF3A1-202ENST00000411423 DNAJC5BQ9UF47 199 aa38.51■■■■□ 3.76
SF3A1-202ENST00000411423 SCRIBQ14160 1630 aa38.38■■■■□ 3.73
SF3A1-202ENST00000411423 SHROOM4Q9ULL8 1493 aa37.99■■■■□ 3.67
SF3A1-202ENST00000411423 EIF4G1Q04637 1599 aaKnown RBP37.57■■■■□ 3.6
SF3A1-202ENST00000411423 CC2D2AQ9P2K1 1620 aa37.51■■■■□ 3.6
SF3A1-202ENST00000411423 CECR2Q9BXF3 1484 aa37.28■■■■□ 3.56
SF3A1-202ENST00000411423 SMARCA4P51532 1647 aa36.65■■■■□ 3.46
SF3A1-202ENST00000411423 NCAPD3P42695 1498 aa36.54■■■■□ 3.44
SF3A1-202ENST00000411423 ATAD2BQ9ULI0 1458 aa36.54■■■■□ 3.44
SF3A1-202ENST00000411423 BAZ1AQ9NRL2 1556 aaPredicted RBP36.5■■■■□ 3.43
SF3A1-202ENST00000411423 SMARCA2P51531 1590 aa36.39■■■■□ 3.42
SF3A1-202ENST00000411423 MROH2BQ7Z745 1585 aa36.38■■■■□ 3.41
SF3A1-202ENST00000411423 HMGXB3Q12766 1538 aa36.31■■■■□ 3.4
SF3A1-202ENST00000411423 PEG3Q9GZU2 1588 aa36.27■■■■□ 3.4
SF3A1-202ENST00000411423 BAZ1BQ9UIG0 1483 aaKnown RBP36.17■■■■□ 3.38
SF3A1-202ENST00000411423 WIZO95785 1651 aa35.97■■■■□ 3.35
SF3A1-202ENST00000411423 NESP48681 1621 aa35.87■■■■□ 3.33
SF3A1-202ENST00000411423 RSF1Q96T23 1441 aaPredicted RBP35.82■■■■□ 3.32
SF3A1-202ENST00000411423 ERCC6Q03468 1493 aa35.69■■■■□ 3.3
SF3A1-202ENST00000411423 LAMC3Q9Y6N6 1575 aa35.59■■■■□ 3.29
SF3A1-202ENST00000411423 TOP2AP11388 1531 aaKnown RBP35.5■■■■□ 3.27
SF3A1-202ENST00000411423 CADPSQ9ULU8 1353 aa35.45■■■■□ 3.27
SF3A1-202ENST00000411423 CUX2O14529 1486 aa35.45■■■■□ 3.27
SF3A1-202ENST00000411423 KIF21AQ7Z4S6 1674 aa35.38■■■■□ 3.25
SF3A1-202ENST00000411423 THOC2Q8NI27 1593 aaKnown RBP35.36■■■■□ 3.25
SF3A1-202ENST00000411423 PDS5BQ9NTI5 1447 aa35.33■■■■□ 3.25
SF3A1-202ENST00000411423 CFTRP13569 1480 aa35.19■■■■□ 3.22
SF3A1-202ENST00000411423 CCDC88BA6NC98 1476 aa35.12■■■■□ 3.21
SF3A1-202ENST00000411423 FANCD2Q9BXW9 1451 aa35.06■■■■□ 3.2
SF3A1-202ENST00000411423 MRC2Q9UBG0 1479 aa35.04■■■■□ 3.2
SF3A1-202ENST00000411423 CEP164Q9UPV0 1460 aa35.01■■■■□ 3.19
SF3A1-202ENST00000411423 WDR62O43379 1518 aa34.96■■■■□ 3.19
SF3A1-202ENST00000411423 PRDM2Q13029 1718 aa34.85■■■■□ 3.17
SF3A1-202ENST00000411423 DNAJC5Q9H3Z4 198 aa34.8■■■■□ 3.16
SF3A1-202ENST00000411423 URB2Q14146 1524 aaKnown RBP34.79■■■■□ 3.16
SF3A1-202ENST00000411423 SUPT5HO00267 1087 aaKnown RBP34.62■■■■□ 3.13
SF3A1-202ENST00000411423 TOPBP1Q92547 1522 aa34.48■■■■□ 3.11
SF3A1-202ENST00000411423 DNMBPQ6XZF7 1577 aa34.37■■■■□ 3.09
SF3A1-202ENST00000411423 ABCC8Q09428 1581 aa34.32■■■■□ 3.09
SF3A1-202ENST00000411423 IFT140Q96RY7 1462 aa34.29■■■■□ 3.08
SF3A1-202ENST00000411423 ZNF608Q9ULD9 1512 aaPredicted RBP34.28■■■■□ 3.08
SF3A1-202ENST00000411423 POLA1P09884 1462 aaPredicted RBP34.17■■■■□ 3.06
SF3A1-202ENST00000411423 TARBP1Q13395 1621 aaKnown RBP34.15■■■■□ 3.06
SF3A1-202ENST00000411423 CUX1P39880 1505 aa34.14■■■■□ 3.06
SF3A1-202ENST00000411423 RAD54L2Q9Y4B4 1467 aa34.07■■■■□ 3.05
SF3A1-202ENST00000411423 EIF4G3O43432 1585 aaKnown RBP34.07■■■■□ 3.05
SF3A1-202ENST00000411423 FGD5Q6ZNL6 1462 aa34.03■■■■□ 3.04
SF3A1-202ENST00000411423 AQRO60306 1485 aaKnown RBP eCLIP34.01■■■■□ 3.041e-8■■■■□ 25.8
SF3A1-202ENST00000411423 SOGA1O94964 1423 aa33.98■■■■□ 3.03
SF3A1-202ENST00000411423 OSCARQ8IYS5 282 aa33.9■■■■□ 3.02
SF3A1-202ENST00000411423 TDRD9Q8NDG6 1382 aaKnown RBP33.88■■■■□ 3.01
SF3A1-202ENST00000411423 WDR97A6NE52 1622 aa33.79■■■■□ 3
SF3A1-202ENST00000411423 SYNJ1O43426 1573 aa33.73■■■□□ 2.99
SF3A1-202ENST00000411423 WRNQ14191 1432 aaPredicted RBP eCLIP33.71■■■□□ 2.99
SF3A1-202ENST00000411423 CHD1O14646 1710 aa33.71■■■□□ 2.99
SF3A1-202ENST00000411423 BIVM-ERCC5R4GMW8 1640 aa33.71■■■□□ 2.99
SF3A1-202ENST00000411423 TOP2BQ02880 1626 aa33.69■■■□□ 2.98
SF3A1-202ENST00000411423 SNAPC4Q5SXM2 1469 aa33.67■■■□□ 2.98
SF3A1-202ENST00000411423 ABCA10Q8WWZ4 1543 aa33.67■■■□□ 2.98
SF3A1-202ENST00000411423 GRIN2BQ13224 1484 aa33.61■■■□□ 2.97
SF3A1-202ENST00000411423 ABCA5Q8WWZ7 1642 aa33.59■■■□□ 2.97
SF3A1-202ENST00000411423 GAPVD1Q14C86 1478 aa33.58■■■□□ 2.97
SF3A1-202ENST00000411423 FBLN2P98095 1184 aa33.58■■■□□ 2.97
SF3A1-202ENST00000411423 PBRM1Q86U86 1689 aa33.56■■■□□ 2.96
SF3A1-202ENST00000411423 MAGI1Q96QZ7 1491 aaPredicted RBP33.54■■■□□ 2.96
SF3A1-202ENST00000411423 TRIM41Q8WV44 630 aa33.52■■■□□ 2.96
SF3A1-202ENST00000411423 RIMBP3CA6NJZ7 1639 aa33.5■■■□□ 2.95
SF3A1-202ENST00000411423 RIMBP3BA6NNM3 1639 aa33.5■■■□□ 2.95
SF3A1-202ENST00000411423 RIMBP3Q9UFD9 1639 aa33.5■■■□□ 2.95
SF3A1-202ENST00000411423 SYNJ2O15056 1496 aa33.44■■■□□ 2.94
SF3A1-202ENST00000411423 ARHGEF11O15085 1522 aa33.43■■■□□ 2.94
SF3A1-202ENST00000411423 CHMP7Q8WUX9 453 aaPredicted RBP33.41■■■□□ 2.94
SF3A1-202ENST00000411423 CLASP1Q7Z460 1538 aa33.35■■■□□ 2.93
SF3A1-202ENST00000411423 ADAMTS12P58397 1594 aa33.3■■■□□ 2.92
SF3A1-202ENST00000411423 ERICH3Q5RHP9 1530 aa33.22■■■□□ 2.91
SF3A1-202ENST00000411423 GRIN2AQ12879 1464 aa33.2■■■□□ 2.91
SF3A1-202ENST00000411423 ARAP1Q96P48 1450 aa33.18■■■□□ 2.9
SF3A1-202ENST00000411423 FHAD1B1AJZ9 1412 aa33.17■■■□□ 2.9
SF3A1-202ENST00000411423 CYB5RLQ6IPT4 315 aa33.12■■■□□ 2.89
SF3A1-202ENST00000411423 CEP170Q5SW79 1584 aa33.12■■■□□ 2.89
SF3A1-202ENST00000411423 NUP160Q12769 1436 aa33.09■■■□□ 2.89
SF3A1-202ENST00000411423 IGF1RP08069 1367 aa32.99■■■□□ 2.87
SF3A1-202ENST00000411423 KIF27Q86VH2 1401 aa32.99■■■□□ 2.87
SF3A1-202ENST00000411423 ERCC6L2Q5T890 1561 aa32.96■■■□□ 2.87
SF3A1-202ENST00000411423 SHROOM2Q13796 1616 aa32.88■■■□□ 2.85
SF3A1-202ENST00000411423 CUL7Q14999 1698 aa32.83■■■□□ 2.85
SF3A1-202ENST00000411423 RUSC2Q8N2Y8 1516 aa32.81■■■□□ 2.84
SF3A1-202ENST00000411423 CARMIL1Q5VZK9 1371 aa32.74■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms