RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 NISCHQ9Y2I1 1504 aa26.37■■□□□ 1.81
CHMP3-205ENST00000409810 CCDC180Q9P1Z9 1646 aa23.51■■□□□ 1.35
CHMP3-205ENST00000409810 ABCC9O60706 1549 aa22.84■■□□□ 1.25
CHMP3-205ENST00000409810 RB1CC1Q8TDY2 1594 aa22.08■■□□□ 1.12
CHMP3-205ENST00000409810 NACADO15069 1562 aa22.06■■□□□ 1.12
CHMP3-205ENST00000409810 ZCCHC6Q5VYS8 1495 aaKnown RBP21.99■■□□□ 1.11
CHMP3-205ENST00000409810 DCAF8L2P0C7V8 631 aa21.97■■□□□ 1.11
CHMP3-205ENST00000409810 MYO15BQ96JP2 1530 aa21.94■■□□□ 1.1
CHMP3-205ENST00000409810 DCAF1Q9Y4B6 1507 aa21.85■■□□□ 1.09
CHMP3-205ENST00000409810 UNC13AQ9UPW8 1703 aa21.59■■□□□ 1.05
CHMP3-205ENST00000409810 SCRIBQ14160 1630 aa21.39■■□□□ 1.01
CHMP3-205ENST00000409810 BICRAQ9NZM4 1560 aa21.34■■□□□ 1.01
CHMP3-205ENST00000409810 PABPN1Q86U42 306 aaKnown RBP eCLIP21.31■■□□□ 1
CHMP3-205ENST00000409810 SHROOM4Q9ULL8 1493 aa21.22■□□□□ 0.99
CHMP3-205ENST00000409810 DNAJC5BQ9UF47 199 aa20.82■□□□□ 0.92
CHMP3-205ENST00000409810 EIF4G1Q04637 1599 aaKnown RBP20.8■□□□□ 0.92
CHMP3-205ENST00000409810 CC2D2AQ9P2K1 1620 aa20.71■□□□□ 0.91
CHMP3-205ENST00000409810 CECR2Q9BXF3 1484 aa20.55■□□□□ 0.88
CHMP3-205ENST00000409810 SMARCA4P51532 1647 aa20.49■□□□□ 0.87
CHMP3-205ENST00000409810 BAZ1AQ9NRL2 1556 aaPredicted RBP20.47■□□□□ 0.87
CHMP3-205ENST00000409810 SMARCA2P51531 1590 aa20.36■□□□□ 0.85
CHMP3-205ENST00000409810 ATAD2BQ9ULI0 1458 aa20.31■□□□□ 0.84
CHMP3-205ENST00000409810 NCAPD3P42695 1498 aa20.3■□□□□ 0.84
CHMP3-205ENST00000409810 MROH2BQ7Z745 1585 aa20.29■□□□□ 0.84
CHMP3-205ENST00000409810 PEG3Q9GZU2 1588 aa20.28■□□□□ 0.84
CHMP3-205ENST00000409810 HMGXB3Q12766 1538 aa20.26■□□□□ 0.83
CHMP3-205ENST00000409810 BAZ1BQ9UIG0 1483 aaKnown RBP20.19■□□□□ 0.82
CHMP3-205ENST00000409810 WIZO95785 1651 aa20.11■□□□□ 0.81
CHMP3-205ENST00000409810 RSF1Q96T23 1441 aaPredicted RBP20.07■□□□□ 0.8
CHMP3-205ENST00000409810 TOP2AP11388 1531 aaKnown RBP19.92■□□□□ 0.78
CHMP3-205ENST00000409810 LAMC3Q9Y6N6 1575 aa19.82■□□□□ 0.76
CHMP3-205ENST00000409810 NESP48681 1621 aa19.76■□□□□ 0.75
CHMP3-205ENST00000409810 ERCC6Q03468 1493 aa19.75■□□□□ 0.75
CHMP3-205ENST00000409810 CADPSQ9ULU8 1353 aa19.71■□□□□ 0.75
CHMP3-205ENST00000409810 PDS5BQ9NTI5 1447 aa19.67■□□□□ 0.74
CHMP3-205ENST00000409810 CCDC88BA6NC98 1476 aa19.63■□□□□ 0.73
CHMP3-205ENST00000409810 KIF21AQ7Z4S6 1674 aa19.62■□□□□ 0.73
CHMP3-205ENST00000409810 CFTRP13569 1480 aa19.61■□□□□ 0.73
CHMP3-205ENST00000409810 PRDM2Q13029 1718 aa19.59■□□□□ 0.73
CHMP3-205ENST00000409810 SUPT5HO00267 1087 aaKnown RBP19.59■□□□□ 0.73
CHMP3-205ENST00000409810 CUX2O14529 1486 aa19.54■□□□□ 0.72
CHMP3-205ENST00000409810 THOC2Q8NI27 1593 aaKnown RBP19.53■□□□□ 0.72
CHMP3-205ENST00000409810 FANCD2Q9BXW9 1451 aa19.5■□□□□ 0.71
CHMP3-205ENST00000409810 CEP164Q9UPV0 1460 aa19.5■□□□□ 0.71
CHMP3-205ENST00000409810 MRC2Q9UBG0 1479 aa19.45■□□□□ 0.7
CHMP3-205ENST00000409810 WDR62O43379 1518 aa19.4■□□□□ 0.7
CHMP3-205ENST00000409810 URB2Q14146 1524 aaKnown RBP19.28■□□□□ 0.68
CHMP3-205ENST00000409810 ABCC8Q09428 1581 aa19.24■□□□□ 0.67
CHMP3-205ENST00000409810 DNMBPQ6XZF7 1577 aa19.21■□□□□ 0.67
CHMP3-205ENST00000409810 TOPBP1Q92547 1522 aa19.2■□□□□ 0.66
CHMP3-205ENST00000409810 IFT140Q96RY7 1462 aa19.09■□□□□ 0.65
CHMP3-205ENST00000409810 CUX1P39880 1505 aa19.05■□□□□ 0.64
CHMP3-205ENST00000409810 POLA1P09884 1462 aaPredicted RBP19.03■□□□□ 0.64
CHMP3-205ENST00000409810 FGD5Q6ZNL6 1462 aa18.99■□□□□ 0.63
CHMP3-205ENST00000409810 TARBP1Q13395 1621 aaKnown RBP18.98■□□□□ 0.63
CHMP3-205ENST00000409810 WRNQ14191 1432 aaPredicted RBP eCLIP18.97■□□□□ 0.63
CHMP3-205ENST00000409810 BIVM-ERCC5R4GMW8 1640 aa18.96■□□□□ 0.63
CHMP3-205ENST00000409810 SOGA1O94964 1423 aa18.94■□□□□ 0.62
CHMP3-205ENST00000409810 TOP2BQ02880 1626 aa18.94■□□□□ 0.62
CHMP3-205ENST00000409810 ZNF608Q9ULD9 1512 aaPredicted RBP18.93■□□□□ 0.62
CHMP3-205ENST00000409810 EIF4G3O43432 1585 aaKnown RBP18.93■□□□□ 0.62
CHMP3-205ENST00000409810 WDR97A6NE52 1622 aa18.92■□□□□ 0.62
CHMP3-205ENST00000409810 RAD54L2Q9Y4B4 1467 aa18.91■□□□□ 0.62
CHMP3-205ENST00000409810 SYNJ1O43426 1573 aa18.9■□□□□ 0.62
CHMP3-205ENST00000409810 AQRO60306 1485 aaKnown RBP eCLIP18.84■□□□□ 0.614e-6■■□□□ 13.9
CHMP3-205ENST00000409810 ABCA10Q8WWZ4 1543 aa18.83■□□□□ 0.6
CHMP3-205ENST00000409810 TDRD9Q8NDG6 1382 aaKnown RBP18.8■□□□□ 0.6
CHMP3-205ENST00000409810 DNAJC5Q9H3Z4 198 aa18.78■□□□□ 0.6
CHMP3-205ENST00000409810 ABCA5Q8WWZ7 1642 aa18.77■□□□□ 0.6
CHMP3-205ENST00000409810 PBRM1Q86U86 1689 aa18.76■□□□□ 0.59
CHMP3-205ENST00000409810 GAPVD1Q14C86 1478 aa18.75■□□□□ 0.59
CHMP3-205ENST00000409810 GRIN2BQ13224 1484 aa18.74■□□□□ 0.59
CHMP3-205ENST00000409810 SNAPC4Q5SXM2 1469 aa18.71■□□□□ 0.59
CHMP3-205ENST00000409810 MAGI1Q96QZ7 1491 aaPredicted RBP18.71■□□□□ 0.59
CHMP3-205ENST00000409810 CHD1O14646 1710 aa18.7■□□□□ 0.58
CHMP3-205ENST00000409810 OSCARQ8IYS5 282 aa18.68■□□□□ 0.58
CHMP3-205ENST00000409810 SYNJ2O15056 1496 aa18.62■□□□□ 0.57
CHMP3-205ENST00000409810 ERICH3Q5RHP9 1530 aa18.62■□□□□ 0.57
CHMP3-205ENST00000409810 FBLN2P98095 1184 aa18.61■□□□□ 0.57
CHMP3-205ENST00000409810 CHMP7Q8WUX9 453 aaPredicted RBP18.59■□□□□ 0.57
CHMP3-205ENST00000409810 ADAMTS12P58397 1594 aa18.59■□□□□ 0.57
CHMP3-205ENST00000409810 KIF27Q86VH2 1401 aa18.58■□□□□ 0.57
CHMP3-205ENST00000409810 FHAD1B1AJZ9 1412 aa18.53■□□□□ 0.56
CHMP3-205ENST00000409810 TRIM41Q8WV44 630 aa18.53■□□□□ 0.56
CHMP3-205ENST00000409810 CUL7Q14999 1698 aa18.5■□□□□ 0.55
CHMP3-205ENST00000409810 GRIN2AQ12879 1464 aa18.5■□□□□ 0.55
CHMP3-205ENST00000409810 CLASP1Q7Z460 1538 aa18.46■□□□□ 0.55
CHMP3-205ENST00000409810 IGF1RP08069 1367 aa18.43■□□□□ 0.54
CHMP3-205ENST00000409810 RIMBP3CA6NJZ7 1639 aa18.41■□□□□ 0.54
CHMP3-205ENST00000409810 RIMBP3BA6NNM3 1639 aa18.41■□□□□ 0.54
CHMP3-205ENST00000409810 RIMBP3Q9UFD9 1639 aa18.41■□□□□ 0.54
CHMP3-205ENST00000409810 NUP160Q12769 1436 aa18.4■□□□□ 0.54
CHMP3-205ENST00000409810 CEP170Q5SW79 1584 aa18.4■□□□□ 0.54
CHMP3-205ENST00000409810 ARHGEF11O15085 1522 aa18.39■□□□□ 0.54
CHMP3-205ENST00000409810 CARMIL1Q5VZK9 1371 aa18.36■□□□□ 0.53
CHMP3-205ENST00000409810 RUSC2Q8N2Y8 1516 aa18.34■□□□□ 0.53
CHMP3-205ENST00000409810 CHIC1Q5VXU3 224 aa18.29■□□□□ 0.52
CHMP3-205ENST00000409810 SHROOM2Q13796 1616 aa18.29■□□□□ 0.52
CHMP3-205ENST00000409810 RAPGEF2Q9Y4G8 1499 aa18.28■□□□□ 0.52
CHMP3-205ENST00000409810 EEA1Q15075 1411 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms