RNA–Protein interactions for RNA: ENST00000409542.5

CHRNA1-205, Transcript of cholinergic receptor nicotinic alpha 1 subunit, humanhuman

TSL 3 BASIC

Gene CHRNA1, Length 1,460 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1-205ENST00000409542 NISCHQ9Y2I1 1504 aa32.07■■■□□ 2.72
CHRNA1-205ENST00000409542 ABCC9O60706 1549 aa29.22■■■□□ 2.27
CHRNA1-205ENST00000409542 CCDC180Q9P1Z9 1646 aa28.82■■■□□ 2.2
CHRNA1-205ENST00000409542 DNAJC5BQ9UF47 199 aa27.77■■■□□ 2.04
CHRNA1-205ENST00000409542 RB1CC1Q8TDY2 1594 aa27.59■■■□□ 2.01
CHRNA1-205ENST00000409542 NACADO15069 1562 aa27.33■■□□□ 1.97
CHRNA1-205ENST00000409542 DCAF8L2P0C7V8 631 aa27.25■■□□□ 1.95
CHRNA1-205ENST00000409542 PABPN1Q86U42 306 aaKnown RBP eCLIP27.2■■□□□ 1.95
CHRNA1-205ENST00000409542 UNC13AQ9UPW8 1703 aa27.05■■□□□ 1.92
CHRNA1-205ENST00000409542 BICRAQ9NZM4 1560 aa26.89■■□□□ 1.9
CHRNA1-205ENST00000409542 MYO15BQ96JP2 1530 aa26.84■■□□□ 1.89
CHRNA1-205ENST00000409542 ZCCHC6Q5VYS8 1495 aaKnown RBP26.5■■□□□ 1.83
CHRNA1-205ENST00000409542 DCAF1Q9Y4B6 1507 aa26.41■■□□□ 1.82
CHRNA1-205ENST00000409542 CC2D2AQ9P2K1 1620 aa26.36■■□□□ 1.81
CHRNA1-205ENST00000409542 SHROOM4Q9ULL8 1493 aa26.34■■□□□ 1.81
CHRNA1-205ENST00000409542 SCRIBQ14160 1630 aa26.33■■□□□ 1.81
CHRNA1-205ENST00000409542 CECR2Q9BXF3 1484 aa26.32■■□□□ 1.8
CHRNA1-205ENST00000409542 EIF4G1Q04637 1599 aaKnown RBP26.21■■□□□ 1.79
CHRNA1-205ENST00000409542 DNAJC5Q9H3Z4 198 aa25.6■■□□□ 1.69
CHRNA1-205ENST00000409542 NCAPD3P42695 1498 aa25.28■■□□□ 1.64
CHRNA1-205ENST00000409542 CUX2O14529 1486 aa25.21■■□□□ 1.63
CHRNA1-205ENST00000409542 ATAD2BQ9ULI0 1458 aa25.19■■□□□ 1.62
CHRNA1-205ENST00000409542 ERCC6Q03468 1493 aa25.17■■□□□ 1.62
CHRNA1-205ENST00000409542 SMARCA4P51532 1647 aa25.07■■□□□ 1.6
CHRNA1-205ENST00000409542 NESP48681 1621 aa25.05■■□□□ 1.6
CHRNA1-205ENST00000409542 SMARCA2P51531 1590 aa25.03■■□□□ 1.6
CHRNA1-205ENST00000409542 HMGXB3Q12766 1538 aa25.03■■□□□ 1.6
CHRNA1-205ENST00000409542 BAZ1BQ9UIG0 1483 aaKnown RBP24.88■■□□□ 1.57
CHRNA1-205ENST00000409542 BAZ1AQ9NRL2 1556 aaPredicted RBP24.86■■□□□ 1.57
CHRNA1-205ENST00000409542 THOC2Q8NI27 1593 aaKnown RBP24.79■■□□□ 1.56
CHRNA1-205ENST00000409542 PEG3Q9GZU2 1588 aa24.79■■□□□ 1.56
CHRNA1-205ENST00000409542 MROH2BQ7Z745 1585 aa24.76■■□□□ 1.55
CHRNA1-205ENST00000409542 LAMC3Q9Y6N6 1575 aa24.72■■□□□ 1.55
CHRNA1-205ENST00000409542 KIF21AQ7Z4S6 1674 aa24.67■■□□□ 1.54
CHRNA1-205ENST00000409542 PDS5BQ9NTI5 1447 aa24.58■■□□□ 1.53
CHRNA1-205ENST00000409542 CADPSQ9ULU8 1353 aa24.5■■□□□ 1.51
CHRNA1-205ENST00000409542 WIZO95785 1651 aa24.44■■□□□ 1.5
CHRNA1-205ENST00000409542 MRC2Q9UBG0 1479 aa24.41■■□□□ 1.5
CHRNA1-205ENST00000409542 TRIM41Q8WV44 630 aa24.38■■□□□ 1.49
CHRNA1-205ENST00000409542 WDR62O43379 1518 aa24.36■■□□□ 1.49
CHRNA1-205ENST00000409542 CEP164Q9UPV0 1460 aa24.25■■□□□ 1.47
CHRNA1-205ENST00000409542 FANCD2Q9BXW9 1451 aa24.22■■□□□ 1.47
CHRNA1-205ENST00000409542 CFTRP13569 1480 aa24.16■■□□□ 1.46
CHRNA1-205ENST00000409542 RSF1Q96T23 1441 aaPredicted RBP24.12■■□□□ 1.45
CHRNA1-205ENST00000409542 URB2Q14146 1524 aaKnown RBP24.08■■□□□ 1.45
CHRNA1-205ENST00000409542 OSCARQ8IYS5 282 aa24.06■■□□□ 1.44
CHRNA1-205ENST00000409542 TOP2AP11388 1531 aaKnown RBP24.04■■□□□ 1.44
CHRNA1-205ENST00000409542 ZNF608Q9ULD9 1512 aaPredicted RBP23.86■■□□□ 1.41
CHRNA1-205ENST00000409542 PRDM2Q13029 1718 aa23.84■■□□□ 1.41
CHRNA1-205ENST00000409542 CCDC88BA6NC98 1476 aa23.84■■□□□ 1.41
CHRNA1-205ENST00000409542 RIMBP3CA6NJZ7 1639 aa23.8■■□□□ 1.4
CHRNA1-205ENST00000409542 RIMBP3BA6NNM3 1639 aa23.8■■□□□ 1.4
CHRNA1-205ENST00000409542 RIMBP3Q9UFD9 1639 aa23.8■■□□□ 1.4
CHRNA1-205ENST00000409542 IFT140Q96RY7 1462 aa23.78■■□□□ 1.4
CHRNA1-205ENST00000409542 TOPBP1Q92547 1522 aa23.75■■□□□ 1.39
CHRNA1-205ENST00000409542 ARHGEF11O15085 1522 aa23.68■■□□□ 1.38
CHRNA1-205ENST00000409542 EIF4G3O43432 1585 aaKnown RBP23.64■■□□□ 1.37
CHRNA1-205ENST00000409542 AQRO60306 1485 aaKnown RBP eCLIP23.6■■□□□ 1.37
CHRNA1-205ENST00000409542 DNMBPQ6XZF7 1577 aa23.6■■□□□ 1.37
CHRNA1-205ENST00000409542 ABCC8Q09428 1581 aa23.59■■□□□ 1.37
CHRNA1-205ENST00000409542 CYB5RLQ6IPT4 315 aa23.56■■□□□ 1.36
CHRNA1-205ENST00000409542 TARBP1Q13395 1621 aaKnown RBP23.56■■□□□ 1.36
CHRNA1-205ENST00000409542 CHD1O14646 1710 aa23.53■■□□□ 1.36
CHRNA1-205ENST00000409542 POLA1P09884 1462 aaPredicted RBP23.48■■□□□ 1.35
CHRNA1-205ENST00000409542 FBLN2P98095 1184 aa23.48■■□□□ 1.35
CHRNA1-205ENST00000409542 ARAP1Q96P48 1450 aa23.45■■□□□ 1.35
CHRNA1-205ENST00000409542 RAD54L2Q9Y4B4 1467 aa23.45■■□□□ 1.35
CHRNA1-205ENST00000409542 TDRD9Q8NDG6 1382 aaKnown RBP23.41■■□□□ 1.34
CHRNA1-205ENST00000409542 SOGA1O94964 1423 aa23.37■■□□□ 1.33
CHRNA1-205ENST00000409542 TRHP20396 242 aaPredicted RBP23.36■■□□□ 1.33
CHRNA1-205ENST00000409542 SNAPC4Q5SXM2 1469 aa23.31■■□□□ 1.32
CHRNA1-205ENST00000409542 FGD5Q6ZNL6 1462 aa23.3■■□□□ 1.32
CHRNA1-205ENST00000409542 CUX1P39880 1505 aa23.26■■□□□ 1.31
CHRNA1-205ENST00000409542 CLASP1Q7Z460 1538 aa23.26■■□□□ 1.31
CHRNA1-205ENST00000409542 CHMP7Q8WUX9 453 aaPredicted RBP23.23■■□□□ 1.31
CHRNA1-205ENST00000409542 WDR97A6NE52 1622 aa23.19■■□□□ 1.3
CHRNA1-205ENST00000409542 MAGI1Q96QZ7 1491 aaPredicted RBP23.18■■□□□ 1.3
CHRNA1-205ENST00000409542 GRIN2BQ13224 1484 aa23.17■■□□□ 1.3
CHRNA1-205ENST00000409542 SYNJ1O43426 1573 aa23.16■■□□□ 1.3
CHRNA1-205ENST00000409542 SYNJ2O15056 1496 aa23.13■■□□□ 1.29
CHRNA1-205ENST00000409542 PBRM1Q86U86 1689 aa23.07■■□□□ 1.28
CHRNA1-205ENST00000409542 GAPVD1Q14C86 1478 aa23.07■■□□□ 1.28
CHRNA1-205ENST00000409542 ABCA10Q8WWZ4 1543 aa23■■□□□ 1.27
CHRNA1-205ENST00000409542 ABCA5Q8WWZ7 1642 aa22.99■■□□□ 1.27
CHRNA1-205ENST00000409542 ERCC6L2Q5T890 1561 aa22.95■■□□□ 1.26
CHRNA1-205ENST00000409542 GRIN2AQ12879 1464 aa22.89■■□□□ 1.25
CHRNA1-205ENST00000409542 SUPT5HO00267 1087 aaKnown RBP22.88■■□□□ 1.25
CHRNA1-205ENST00000409542 CEP170Q5SW79 1584 aa22.85■■□□□ 1.25
CHRNA1-205ENST00000409542 AEBP2Q6ZN18 517 aaPredicted RBP22.85■■□□□ 1.25
CHRNA1-205ENST00000409542 ADAMTS12P58397 1594 aa22.83■■□□□ 1.25
CHRNA1-205ENST00000409542 NUP160Q12769 1436 aa22.83■■□□□ 1.25
CHRNA1-205ENST00000409542 WRNQ14191 1432 aaPredicted RBP eCLIP22.82■■□□□ 1.24
CHRNA1-205ENST00000409542 BIVM-ERCC5R4GMW8 1640 aa22.76■■□□□ 1.23
CHRNA1-205ENST00000409542 TOP2BQ02880 1626 aa22.75■■□□□ 1.23
CHRNA1-205ENST00000409542 FHAD1B1AJZ9 1412 aa22.75■■□□□ 1.23
CHRNA1-205ENST00000409542 SHROOM2Q13796 1616 aa22.75■■□□□ 1.23
CHRNA1-205ENST00000409542 ERICH3Q5RHP9 1530 aa22.68■■□□□ 1.22
CHRNA1-205ENST00000409542 PRG4Q92954 1404 aaPredicted RBP22.65■■□□□ 1.22
CHRNA1-205ENST00000409542 KIF13AQ9H1H9 1805 aa22.63■■□□□ 1.21
CHRNA1-205ENST00000409542 JPH4Q96JJ6 628 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms