RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 NISCHQ9Y2I1 1504 aa48.61■■■■■ 5.37
VSX1-203ENST00000409285 CCDC180Q9P1Z9 1646 aa43.07■■■■■ 4.48
VSX1-203ENST00000409285 ABCC9O60706 1549 aa41.11■■■■■ 4.17
VSX1-203ENST00000409285 ZCCHC6Q5VYS8 1495 aaKnown RBP40.69■■■■■ 4.1
VSX1-203ENST00000409285 DCAF1Q9Y4B6 1507 aa40.37■■■■■ 4.05
VSX1-203ENST00000409285 MYO15BQ96JP2 1530 aa40.26■■■■■ 4.04
VSX1-203ENST00000409285 NACADO15069 1562 aa40.19■■■■■ 4.02
VSX1-203ENST00000409285 RB1CC1Q8TDY2 1594 aa40.03■■■■■ 4
VSX1-203ENST00000409285 DCAF8L2P0C7V8 631 aa39.94■■■■□ 3.98
VSX1-203ENST00000409285 UNC13AQ9UPW8 1703 aa39.3■■■■□ 3.88
VSX1-203ENST00000409285 SCRIBQ14160 1630 aa39.17■■■■□ 3.86
VSX1-203ENST00000409285 BICRAQ9NZM4 1560 aa38.79■■■■□ 3.8
VSX1-203ENST00000409285 SHROOM4Q9ULL8 1493 aa38.62■■■■□ 3.77
VSX1-203ENST00000409285 PABPN1Q86U42 306 aaKnown RBP eCLIP38.41■■■■□ 3.74
VSX1-203ENST00000409285 EIF4G1Q04637 1599 aaKnown RBP37.69■■■■□ 3.62
VSX1-203ENST00000409285 CECR2Q9BXF3 1484 aa37.69■■■■□ 3.62
VSX1-203ENST00000409285 BAZ1AQ9NRL2 1556 aaPredicted RBP37.66■■■■□ 3.62
VSX1-203ENST00000409285 SMARCA4P51532 1647 aa37.61■■■■□ 3.61
VSX1-203ENST00000409285 DNAJC5BQ9UF47 199 aa37.52■■■■□ 3.6
VSX1-203ENST00000409285 MROH2BQ7Z745 1585 aa37.44■■■■□ 3.58
VSX1-203ENST00000409285 CC2D2AQ9P2K1 1620 aa37.33■■■■□ 3.57
VSX1-203ENST00000409285 PEG3Q9GZU2 1588 aa37.3■■■■□ 3.56
VSX1-203ENST00000409285 RSF1Q96T23 1441 aaPredicted RBP37.26■■■■□ 3.55
VSX1-203ENST00000409285 SMARCA2P51531 1590 aa37.19■■■■□ 3.54
VSX1-203ENST00000409285 WIZO95785 1651 aa37.13■■■■□ 3.53
VSX1-203ENST00000409285 ATAD2BQ9ULI0 1458 aa37.11■■■■□ 3.53
VSX1-203ENST00000409285 NCAPD3P42695 1498 aa37■■■■□ 3.51
VSX1-203ENST00000409285 HMGXB3Q12766 1538 aa36.99■■■■□ 3.51
VSX1-203ENST00000409285 BAZ1BQ9UIG0 1483 aaKnown RBP36.86■■■■□ 3.49
VSX1-203ENST00000409285 TOP2AP11388 1531 aaKnown RBP36.8■■■■□ 3.48
VSX1-203ENST00000409285 SUPT5HO00267 1087 aaKnown RBP36.68■■■■□ 3.46
VSX1-203ENST00000409285 CCDC88BA6NC98 1476 aa36.26■■■■□ 3.4
VSX1-203ENST00000409285 PRDM2Q13029 1718 aa35.99■■■■□ 3.35
VSX1-203ENST00000409285 LAMC3Q9Y6N6 1575 aa35.99■■■■□ 3.35
VSX1-203ENST00000409285 CFTRP13569 1480 aa35.92■■■■□ 3.34
VSX1-203ENST00000409285 CADPSQ9ULU8 1353 aa35.9■■■■□ 3.34
VSX1-203ENST00000409285 NESP48681 1621 aa35.8■■■■□ 3.32
VSX1-203ENST00000409285 PDS5BQ9NTI5 1447 aa35.58■■■■□ 3.29
VSX1-203ENST00000409285 KIF21AQ7Z4S6 1674 aa35.58■■■■□ 3.29
VSX1-203ENST00000409285 FANCD2Q9BXW9 1451 aa35.51■■■■□ 3.28
VSX1-203ENST00000409285 ERCC6Q03468 1493 aa35.44■■■■□ 3.26
VSX1-203ENST00000409285 CEP164Q9UPV0 1460 aa35.42■■■■□ 3.26
VSX1-203ENST00000409285 THOC2Q8NI27 1593 aaKnown RBP35.26■■■■□ 3.24
VSX1-203ENST00000409285 MRC2Q9UBG0 1479 aa35.21■■■■□ 3.23
VSX1-203ENST00000409285 ABCC8Q09428 1581 aa35.2■■■■□ 3.23
VSX1-203ENST00000409285 DNMBPQ6XZF7 1577 aa35.16■■■■□ 3.22
VSX1-203ENST00000409285 WDR62O43379 1518 aa35.14■■■■□ 3.22
VSX1-203ENST00000409285 URB2Q14146 1524 aaKnown RBP35.12■■■■□ 3.21
VSX1-203ENST00000409285 BIVM-ERCC5R4GMW8 1640 aa35.12■■■■□ 3.21
VSX1-203ENST00000409285 WRNQ14191 1432 aaPredicted RBP eCLIP35.11■■■■□ 3.21
VSX1-203ENST00000409285 CUX1P39880 1505 aa35.09■■■■□ 3.21
VSX1-203ENST00000409285 TOP2BQ02880 1626 aa35.08■■■■□ 3.21
VSX1-203ENST00000409285 TOPBP1Q92547 1522 aa35.07■■■■□ 3.2
VSX1-203ENST00000409285 SYNJ1O43426 1573 aa35.06■■■■□ 3.2
VSX1-203ENST00000409285 CUX2O14529 1486 aa35.01■■■■□ 3.19
VSX1-203ENST00000409285 FGD5Q6ZNL6 1462 aa34.83■■■■□ 3.17
VSX1-203ENST00000409285 POLA1P09884 1462 aaPredicted RBP34.81■■■■□ 3.16
VSX1-203ENST00000409285 CHIC1Q5VXU3 224 aa34.78■■■■□ 3.16
VSX1-203ENST00000409285 TARBP1Q13395 1621 aaKnown RBP34.71■■■■□ 3.15
VSX1-203ENST00000409285 WDR97A6NE52 1622 aa34.7■■■■□ 3.15
VSX1-203ENST00000409285 TRIM41Q8WV44 630 aa34.68■■■■□ 3.14
VSX1-203ENST00000409285 IFT140Q96RY7 1462 aa34.65■■■■□ 3.14
VSX1-203ENST00000409285 SOGA1O94964 1423 aa34.6■■■■□ 3.13
VSX1-203ENST00000409285 ABCA10Q8WWZ4 1543 aa34.58■■■■□ 3.13
VSX1-203ENST00000409285 RAD54L2Q9Y4B4 1467 aa34.57■■■■□ 3.13
VSX1-203ENST00000409285 ABCA5Q8WWZ7 1642 aa34.45■■■■□ 3.11
VSX1-203ENST00000409285 EIF4G3O43432 1585 aaKnown RBP34.41■■■■□ 3.1
VSX1-203ENST00000409285 ZNF608Q9ULD9 1512 aaPredicted RBP34.37■■■■□ 3.09
VSX1-203ENST00000409285 PBRM1Q86U86 1689 aa34.33■■■■□ 3.09
VSX1-203ENST00000409285 KIF27Q86VH2 1401 aa34.32■■■■□ 3.08
VSX1-203ENST00000409285 GAPVD1Q14C86 1478 aa34.27■■■■□ 3.08
VSX1-203ENST00000409285 TDRD9Q8NDG6 1382 aaKnown RBP34.26■■■■□ 3.07
VSX1-203ENST00000409285 EEA1Q15075 1411 aa34.24■■■■□ 3.07
VSX1-203ENST00000409285 AQRO60306 1485 aaKnown RBP eCLIP34.24■■■■□ 3.07
VSX1-203ENST00000409285 ERICH3Q5RHP9 1530 aa34.21■■■■□ 3.07
VSX1-203ENST00000409285 RUSC2Q8N2Y8 1516 aa34.19■■■■□ 3.06
VSX1-203ENST00000409285 GRIN2BQ13224 1484 aa34.17■■■■□ 3.06
VSX1-203ENST00000409285 CUL7Q14999 1698 aa34.12■■■■□ 3.05
VSX1-203ENST00000409285 MAGI1Q96QZ7 1491 aaPredicted RBP34.06■■■■□ 3.04
VSX1-203ENST00000409285 ADAMTS12P58397 1594 aa34.04■■■■□ 3.04
VSX1-203ENST00000409285 IGF1RP08069 1367 aa34.03■■■■□ 3.04
VSX1-203ENST00000409285 SNAPC4Q5SXM2 1469 aa34■■■■□ 3.03
VSX1-203ENST00000409285 CSRNP3Q8WYN3 585 aa33.91■■■■□ 3.02
VSX1-203ENST00000409285 FHAD1B1AJZ9 1412 aa33.91■■■■□ 3.02
VSX1-203ENST00000409285 KIF21BO75037 1637 aa33.9■■■■□ 3.02
VSX1-203ENST00000409285 PRXQ9BXM0 1461 aa33.9■■■■□ 3.02
VSX1-203ENST00000409285 SYNJ2O15056 1496 aa33.88■■■■□ 3.01
VSX1-203ENST00000409285 CHD1O14646 1710 aa33.87■■■■□ 3.01
VSX1-203ENST00000409285 CARMIL1Q5VZK9 1371 aa33.84■■■■□ 3.01
VSX1-203ENST00000409285 FAM9AQ8IZU1 332 aaPredicted RBP33.83■■■■□ 3.01
VSX1-203ENST00000409285 RAPGEF2Q9Y4G8 1499 aa33.8■■■■□ 3
VSX1-203ENST00000409285 GRIN2AQ12879 1464 aa33.76■■■□□ 2.99
VSX1-203ENST00000409285 DNAJC5Q9H3Z4 198 aa33.69■■■□□ 2.98
VSX1-203ENST00000409285 GOLGA3Q08378 1498 aa33.65■■■□□ 2.98
VSX1-203ENST00000409285 CTTNBP2Q8WZ74 1663 aa33.64■■■□□ 2.98
VSX1-203ENST00000409285 CHMP7Q8WUX9 453 aaPredicted RBP33.63■■■□□ 2.97
VSX1-203ENST00000409285 CEP170Q5SW79 1584 aa33.59■■■□□ 2.97
VSX1-203ENST00000409285 NUP160Q12769 1436 aa33.58■■■□□ 2.97
VSX1-203ENST00000409285 OSCARQ8IYS5 282 aa33.56■■■□□ 2.96
VSX1-203ENST00000409285 FBLN2P98095 1184 aa33.53■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms