RNA–Protein interactions for RNA: ENST00000405692.2

PDGFA-204, Transcript of platelet derived growth factor subunit A, humanhuman

TSL 5

Gene PDGFA, Length 663 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFA-204ENST00000405692 NISCHQ9Y2I1 1504 aa50.36■■■■■ 5.65
PDGFA-204ENST00000405692 CCDC180Q9P1Z9 1646 aa44.78■■■■■ 4.76
PDGFA-204ENST00000405692 ABCC9O60706 1549 aa43.78■■■■■ 4.6
PDGFA-204ENST00000405692 RB1CC1Q8TDY2 1594 aa42.18■■■■■ 4.34
PDGFA-204ENST00000405692 NACADO15069 1562 aa42.14■■■■■ 4.34
PDGFA-204ENST00000405692 DCAF8L2P0C7V8 631 aa42.14■■■■■ 4.34
PDGFA-204ENST00000405692 ZCCHC6Q5VYS8 1495 aaKnown RBP41.94■■■■■ 4.3
PDGFA-204ENST00000405692 MYO15BQ96JP2 1530 aa41.91■■■■■ 4.3
PDGFA-204ENST00000405692 DCAF1Q9Y4B6 1507 aa41.71■■■■■ 4.27
PDGFA-204ENST00000405692 UNC13AQ9UPW8 1703 aa41.07■■■■■ 4.16
PDGFA-204ENST00000405692 PABPN1Q86U42 306 aaKnown RBP eCLIP40.93■■■■■ 4.14
PDGFA-204ENST00000405692 SCRIBQ14160 1630 aa40.81■■■■■ 4.12
PDGFA-204ENST00000405692 BICRAQ9NZM4 1560 aa40.79■■■■■ 4.12
PDGFA-204ENST00000405692 SHROOM4Q9ULL8 1493 aa40.52■■■■■ 4.08
PDGFA-204ENST00000405692 DNAJC5BQ9UF47 199 aa40.13■■■■■ 4.01
PDGFA-204ENST00000405692 EIF4G1Q04637 1599 aaKnown RBP39.77■■■■□ 3.96
PDGFA-204ENST00000405692 CC2D2AQ9P2K1 1620 aa39.6■■■■□ 3.93
PDGFA-204ENST00000405692 CECR2Q9BXF3 1484 aa39.38■■■■□ 3.9
PDGFA-204ENST00000405692 BAZ1AQ9NRL2 1556 aaPredicted RBP39.07■■■■□ 3.84
PDGFA-204ENST00000405692 SMARCA4P51532 1647 aa39.06■■■■□ 3.84
PDGFA-204ENST00000405692 NCAPD3P42695 1498 aa38.88■■■■□ 3.81
PDGFA-204ENST00000405692 ATAD2BQ9ULI0 1458 aa38.87■■■■□ 3.81
PDGFA-204ENST00000405692 SMARCA2P51531 1590 aa38.87■■■■□ 3.81
PDGFA-204ENST00000405692 MROH2BQ7Z745 1585 aa38.77■■■■□ 3.8
PDGFA-204ENST00000405692 PEG3Q9GZU2 1588 aa38.7■■■■□ 3.79
PDGFA-204ENST00000405692 HMGXB3Q12766 1538 aa38.68■■■■□ 3.78
PDGFA-204ENST00000405692 BAZ1BQ9UIG0 1483 aaKnown RBP38.58■■■■□ 3.77
PDGFA-204ENST00000405692 RSF1Q96T23 1441 aaPredicted RBP38.36■■■■□ 3.73
PDGFA-204ENST00000405692 WIZO95785 1651 aa38.33■■■■□ 3.73
PDGFA-204ENST00000405692 TOP2AP11388 1531 aaKnown RBP37.99■■■■□ 3.67
PDGFA-204ENST00000405692 LAMC3Q9Y6N6 1575 aa37.85■■■■□ 3.65
PDGFA-204ENST00000405692 NESP48681 1621 aa37.85■■■■□ 3.65
PDGFA-204ENST00000405692 ERCC6Q03468 1493 aa37.82■■■■□ 3.64
PDGFA-204ENST00000405692 CADPSQ9ULU8 1353 aa37.76■■■■□ 3.64
PDGFA-204ENST00000405692 PDS5BQ9NTI5 1447 aa37.65■■■■□ 3.62
PDGFA-204ENST00000405692 CCDC88BA6NC98 1476 aa37.53■■■■□ 3.6
PDGFA-204ENST00000405692 CFTRP13569 1480 aa37.51■■■■□ 3.59
PDGFA-204ENST00000405692 SUPT5HO00267 1087 aaKnown RBP37.43■■■■□ 3.58
PDGFA-204ENST00000405692 CUX2O14529 1486 aa37.42■■■■□ 3.58
PDGFA-204ENST00000405692 KIF21AQ7Z4S6 1674 aa37.39■■■■□ 3.58
PDGFA-204ENST00000405692 FANCD2Q9BXW9 1451 aa37.3■■■■□ 3.56
PDGFA-204ENST00000405692 THOC2Q8NI27 1593 aaKnown RBP37.29■■■■□ 3.56
PDGFA-204ENST00000405692 CEP164Q9UPV0 1460 aa37.27■■■■□ 3.56
PDGFA-204ENST00000405692 MRC2Q9UBG0 1479 aa37.2■■■■□ 3.55
PDGFA-204ENST00000405692 PRDM2Q13029 1718 aa37.16■■■■□ 3.54
PDGFA-204ENST00000405692 WDR62O43379 1518 aa37.05■■■■□ 3.52
PDGFA-204ENST00000405692 URB2Q14146 1524 aaKnown RBP36.87■■■■□ 3.49
PDGFA-204ENST00000405692 ABCC8Q09428 1581 aa36.78■■■■□ 3.48
PDGFA-204ENST00000405692 TOPBP1Q92547 1522 aa36.69■■■■□ 3.46
PDGFA-204ENST00000405692 DNMBPQ6XZF7 1577 aa36.66■■■■□ 3.46
PDGFA-204ENST00000405692 IFT140Q96RY7 1462 aa36.5■■■■□ 3.43
PDGFA-204ENST00000405692 POLA1P09884 1462 aaPredicted RBP36.37■■■■□ 3.41
PDGFA-204ENST00000405692 CUX1P39880 1505 aa36.37■■■■□ 3.41
PDGFA-204ENST00000405692 FGD5Q6ZNL6 1462 aa36.29■■■■□ 3.4
PDGFA-204ENST00000405692 SOGA1O94964 1423 aa36.27■■■■□ 3.4
PDGFA-204ENST00000405692 DNAJC5Q9H3Z4 198 aa36.25■■■■□ 3.39
PDGFA-204ENST00000405692 TARBP1Q13395 1621 aaKnown RBP36.25■■■■□ 3.39
PDGFA-204ENST00000405692 ZNF608Q9ULD9 1512 aaPredicted RBP36.24■■■■□ 3.39
PDGFA-204ENST00000405692 WRNQ14191 1432 aaPredicted RBP eCLIP36.21■■■■□ 3.39
PDGFA-204ENST00000405692 RAD54L2Q9Y4B4 1467 aa36.18■■■■□ 3.38
PDGFA-204ENST00000405692 EIF4G3O43432 1585 aaKnown RBP36.12■■■■□ 3.37
PDGFA-204ENST00000405692 TOP2BQ02880 1626 aa36.1■■■■□ 3.37
PDGFA-204ENST00000405692 AQRO60306 1485 aaKnown RBP eCLIP36.08■■■■□ 3.37
PDGFA-204ENST00000405692 BIVM-ERCC5R4GMW8 1640 aa36.08■■■■□ 3.37
PDGFA-204ENST00000405692 WDR97A6NE52 1622 aa36.06■■■■□ 3.36
PDGFA-204ENST00000405692 SYNJ1O43426 1573 aa36.03■■■■□ 3.36
PDGFA-204ENST00000405692 TDRD9Q8NDG6 1382 aaKnown RBP36.02■■■■□ 3.36
PDGFA-204ENST00000405692 ABCA10Q8WWZ4 1543 aa35.96■■■■□ 3.35
PDGFA-204ENST00000405692 OSCARQ8IYS5 282 aa35.91■■■■□ 3.34
PDGFA-204ENST00000405692 GRIN2BQ13224 1484 aa35.85■■■■□ 3.33
PDGFA-204ENST00000405692 GAPVD1Q14C86 1478 aa35.84■■■■□ 3.33
PDGFA-204ENST00000405692 ABCA5Q8WWZ7 1642 aa35.76■■■■□ 3.32
PDGFA-204ENST00000405692 MAGI1Q96QZ7 1491 aaPredicted RBP35.76■■■■□ 3.32
PDGFA-204ENST00000405692 SNAPC4Q5SXM2 1469 aa35.75■■■■□ 3.31
PDGFA-204ENST00000405692 FBLN2P98095 1184 aa35.72■■■■□ 3.31
PDGFA-204ENST00000405692 PBRM1Q86U86 1689 aa35.69■■■■□ 3.3
PDGFA-204ENST00000405692 CHMP7Q8WUX9 453 aaPredicted RBP35.65■■■■□ 3.3
PDGFA-204ENST00000405692 CHD1O14646 1710 aa35.63■■■■□ 3.29
PDGFA-204ENST00000405692 SYNJ2O15056 1496 aa35.6■■■■□ 3.29
PDGFA-204ENST00000405692 ERICH3Q5RHP9 1530 aa35.55■■■■□ 3.28
PDGFA-204ENST00000405692 KIF27Q86VH2 1401 aa35.49■■■■□ 3.27
PDGFA-204ENST00000405692 FHAD1B1AJZ9 1412 aa35.45■■■■□ 3.27
PDGFA-204ENST00000405692 ADAMTS12P58397 1594 aa35.43■■■■□ 3.26
PDGFA-204ENST00000405692 TRIM41Q8WV44 630 aa35.41■■■■□ 3.26
PDGFA-204ENST00000405692 GRIN2AQ12879 1464 aa35.35■■■■□ 3.25
PDGFA-204ENST00000405692 IGF1RP08069 1367 aa35.3■■■■□ 3.24
PDGFA-204ENST00000405692 CLASP1Q7Z460 1538 aa35.28■■■■□ 3.24
PDGFA-204ENST00000405692 ARHGEF11O15085 1522 aa35.23■■■■□ 3.23
PDGFA-204ENST00000405692 CUL7Q14999 1698 aa35.21■■■■□ 3.23
PDGFA-204ENST00000405692 RIMBP3CA6NJZ7 1639 aa35.21■■■■□ 3.23
PDGFA-204ENST00000405692 RIMBP3BA6NNM3 1639 aa35.21■■■■□ 3.23
PDGFA-204ENST00000405692 RIMBP3Q9UFD9 1639 aa35.21■■■■□ 3.23
PDGFA-204ENST00000405692 NUP160Q12769 1436 aa35.2■■■■□ 3.23
PDGFA-204ENST00000405692 CEP170Q5SW79 1584 aa35.13■■■■□ 3.21
PDGFA-204ENST00000405692 CARMIL1Q5VZK9 1371 aa35.13■■■■□ 3.21
PDGFA-204ENST00000405692 RUSC2Q8N2Y8 1516 aa35.03■■■■□ 3.2
PDGFA-204ENST00000405692 CYB5RLQ6IPT4 315 aa34.95■■■■□ 3.19
PDGFA-204ENST00000405692 ARAP1Q96P48 1450 aa34.93■■■■□ 3.18
PDGFA-204ENST00000405692 RAPGEF2Q9Y4G8 1499 aa34.91■■■■□ 3.18
PDGFA-204ENST00000405692 CHIC1Q5VXU3 224 aa34.91■■■■□ 3.18
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms