RNA–Protein interactions for RNA: ENST00000399866.3

LINC02449-202, Transcript of long intergenic non-protein coding RNA 2449, humanhuman

TSL 3 BASIC

Gene LINC02449, Length 517 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02449-202ENST00000399866 NISCHQ9Y2I1 1504 aa19.51■□□□□ 0.71
LINC02449-202ENST00000399866 CCDC180Q9P1Z9 1646 aa17.03■□□□□ 0.32
LINC02449-202ENST00000399866 ZCCHC6Q5VYS8 1495 aaKnown RBP16.42■□□□□ 0.22
LINC02449-202ENST00000399866 DCAF1Q9Y4B6 1507 aa16.15■□□□□ 0.18
LINC02449-202ENST00000399866 ABCC9O60706 1549 aa15.99■□□□□ 0.15
LINC02449-202ENST00000399866 DCAF8L2P0C7V8 631 aa15.97■□□□□ 0.15
LINC02449-202ENST00000399866 MYO15BQ96JP2 1530 aa15.93■□□□□ 0.14
LINC02449-202ENST00000399866 SHROOM4Q9ULL8 1493 aa15.92■□□□□ 0.14
LINC02449-202ENST00000399866 NACADO15069 1562 aa15.81■□□□□ 0.12
LINC02449-202ENST00000399866 RB1CC1Q8TDY2 1594 aa15.67■□□□□ 0.1
LINC02449-202ENST00000399866 SCRIBQ14160 1630 aa15.65■□□□□ 0.1
LINC02449-202ENST00000399866 UNC13AQ9UPW8 1703 aa15.36■□□□□ 0.05
LINC02449-202ENST00000399866 SUPT5HO00267 1087 aaKnown RBP15.3■□□□□ 0.04
LINC02449-202ENST00000399866 BICRAQ9NZM4 1560 aa15.2■□□□□ 0.02
LINC02449-202ENST00000399866 RSF1Q96T23 1441 aaPredicted RBP15.14■□□□□ 0.01
LINC02449-202ENST00000399866 CECR2Q9BXF3 1484 aa15.14■□□□□ 0.01
LINC02449-202ENST00000399866 MROH2BQ7Z745 1585 aa15.08■□□□□ 0
LINC02449-202ENST00000399866 BAZ1AQ9NRL2 1556 aaPredicted RBP15.07■□□□□ 0
LINC02449-202ENST00000399866 PABPN1Q86U42 306 aaKnown RBP eCLIP15.04■□□□□ -0
LINC02449-202ENST00000399866 SMARCA4P51532 1647 aa15.01□□□□□ -0.01
LINC02449-202ENST00000399866 WIZO95785 1651 aa14.97□□□□□ -0.01
LINC02449-202ENST00000399866 TOP2AP11388 1531 aaKnown RBP14.83□□□□□ -0.04
LINC02449-202ENST00000399866 PEG3Q9GZU2 1588 aa14.81□□□□□ -0.04
LINC02449-202ENST00000399866 SMARCA2P51531 1590 aa14.73□□□□□ -0.05
LINC02449-202ENST00000399866 EIF4G1Q04637 1599 aaKnown RBP14.73□□□□□ -0.05
LINC02449-202ENST00000399866 ATAD2BQ9ULI0 1458 aa14.71□□□□□ -0.05
LINC02449-202ENST00000399866 CHIC1Q5VXU3 224 aa14.7□□□□□ -0.06
LINC02449-202ENST00000399866 BAZ1BQ9UIG0 1483 aaKnown RBP14.64□□□□□ -0.07
LINC02449-202ENST00000399866 CCDC88BA6NC98 1476 aa14.63□□□□□ -0.07
LINC02449-202ENST00000399866 HMGXB3Q12766 1538 aa14.6□□□□□ -0.07
LINC02449-202ENST00000399866 NCAPD3P42695 1498 aa14.57□□□□□ -0.08
LINC02449-202ENST00000399866 CC2D2AQ9P2K1 1620 aa14.49□□□□□ -0.09
LINC02449-202ENST00000399866 TRIM41Q8WV44 630 aa14.38□□□□□ -0.11
LINC02449-202ENST00000399866 ABCC8Q09428 1581 aa14.37□□□□□ -0.11
LINC02449-202ENST00000399866 CFTRP13569 1480 aa14.27□□□□□ -0.12
LINC02449-202ENST00000399866 PRDM2Q13029 1718 aa14.26□□□□□ -0.13
LINC02449-202ENST00000399866 WRNQ14191 1432 aaPredicted RBP eCLIP14.25□□□□□ -0.13
LINC02449-202ENST00000399866 SYNJ1O43426 1573 aa14.23□□□□□ -0.13
LINC02449-202ENST00000399866 CADPSQ9ULU8 1353 aa14.18□□□□□ -0.14
LINC02449-202ENST00000399866 BIVM-ERCC5R4GMW8 1640 aa14.17□□□□□ -0.14
LINC02449-202ENST00000399866 TOP2BQ02880 1626 aa14.16□□□□□ -0.14
LINC02449-202ENST00000399866 FAM9AQ8IZU1 332 aaPredicted RBP14.13□□□□□ -0.15
LINC02449-202ENST00000399866 CUX1P39880 1505 aa14.11□□□□□ -0.15
LINC02449-202ENST00000399866 LOC105371045A0A1W2PR82 267 aa14.11□□□□□ -0.15
LINC02449-202ENST00000399866 EEA1Q15075 1411 aa14.09□□□□□ -0.15
LINC02449-202ENST00000399866 LAMC3Q9Y6N6 1575 aa14.09□□□□□ -0.15
LINC02449-202ENST00000399866 SOGA1O94964 1423 aa14.08□□□□□ -0.15
LINC02449-202ENST00000399866 NESP48681 1621 aa14.06□□□□□ -0.16
LINC02449-202ENST00000399866 FANCD2Q9BXW9 1451 aa14.06□□□□□ -0.16
LINC02449-202ENST00000399866 RUSC2Q8N2Y8 1516 aa14.04□□□□□ -0.16
LINC02449-202ENST00000399866 DNAJC5BQ9UF47 199 aa14.02□□□□□ -0.17
LINC02449-202ENST00000399866 DNMBPQ6XZF7 1577 aa13.97□□□□□ -0.17
LINC02449-202ENST00000399866 CEP164Q9UPV0 1460 aa13.97□□□□□ -0.17
LINC02449-202ENST00000399866 KIF21BO75037 1637 aa13.95□□□□□ -0.18
LINC02449-202ENST00000399866 CSRNP3Q8WYN3 585 aa13.94□□□□□ -0.18
LINC02449-202ENST00000399866 PDS5BQ9NTI5 1447 aa13.94□□□□□ -0.18
LINC02449-202ENST00000399866 FGD5Q6ZNL6 1462 aa13.93□□□□□ -0.18
LINC02449-202ENST00000399866 KIF21AQ7Z4S6 1674 aa13.92□□□□□ -0.18
LINC02449-202ENST00000399866 TOPBP1Q92547 1522 aa13.92□□□□□ -0.18
LINC02449-202ENST00000399866 EHMT2Q96KQ7 1210 aa13.92□□□□□ -0.18
LINC02449-202ENST00000399866 GOLGA3Q08378 1498 aa13.92□□□□□ -0.18
LINC02449-202ENST00000399866 URB2Q14146 1524 aaKnown RBP13.9□□□□□ -0.19
LINC02449-202ENST00000399866 KIF27Q86VH2 1401 aa13.88□□□□□ -0.19
LINC02449-202ENST00000399866 TNIKQ9UKE5 1360 aa13.85□□□□□ -0.19
LINC02449-202ENST00000399866 POLA1P09884 1462 aaPredicted RBP13.85□□□□□ -0.19
LINC02449-202ENST00000399866 CUX2O14529 1486 aa13.84□□□□□ -0.19
LINC02449-202ENST00000399866 ERICH3Q5RHP9 1530 aa13.83□□□□□ -0.2
LINC02449-202ENST00000399866 WDR97A6NE52 1622 aa13.82□□□□□ -0.2
LINC02449-202ENST00000399866 PRXQ9BXM0 1461 aa13.81□□□□□ -0.2
LINC02449-202ENST00000399866 ABCA10Q8WWZ4 1543 aa13.81□□□□□ -0.2
LINC02449-202ENST00000399866 CEP162Q5TB80 1403 aa13.81□□□□□ -0.2
LINC02449-202ENST00000399866 RAPGEF2Q9Y4G8 1499 aa13.8□□□□□ -0.2
LINC02449-202ENST00000399866 MRC2Q9UBG0 1479 aa13.8□□□□□ -0.2
LINC02449-202ENST00000399866 RAD54L2Q9Y4B4 1467 aa13.8□□□□□ -0.2
LINC02449-202ENST00000399866 UBTFP17480 764 aaKnown RBP13.76□□□□□ -0.21
LINC02449-202ENST00000399866 WDR62O43379 1518 aa13.74□□□□□ -0.21
LINC02449-202ENST00000399866 ABCA5Q8WWZ7 1642 aa13.73□□□□□ -0.21
LINC02449-202ENST00000399866 IGF1RP08069 1367 aa13.72□□□□□ -0.21
LINC02449-202ENST00000399866 TARBP1Q13395 1621 aaKnown RBP13.72□□□□□ -0.21
LINC02449-202ENST00000399866 ERCC6Q03468 1493 aa13.7□□□□□ -0.22
LINC02449-202ENST00000399866 THOC2Q8NI27 1593 aaKnown RBP13.7□□□□□ -0.22
LINC02449-202ENST00000399866 CUL7Q14999 1698 aa13.69□□□□□ -0.22
LINC02449-202ENST00000399866 CLIP1P30622 1438 aa13.67□□□□□ -0.22
LINC02449-202ENST00000399866 CARMIL1Q5VZK9 1371 aa13.66□□□□□ -0.22
LINC02449-202ENST00000399866 GAPVD1Q14C86 1478 aa13.64□□□□□ -0.23
LINC02449-202ENST00000399866 IFT140Q96RY7 1462 aa13.63□□□□□ -0.23
LINC02449-202ENST00000399866 TDRD9Q8NDG6 1382 aaKnown RBP13.62□□□□□ -0.23
LINC02449-202ENST00000399866 PBRM1Q86U86 1689 aa13.62□□□□□ -0.23
LINC02449-202ENST00000399866 VPS8Q8N3P4 1428 aa13.57□□□□□ -0.24
LINC02449-202ENST00000399866 ARAP1Q96P48 1450 aa13.57□□□□□ -0.24
LINC02449-202ENST00000399866 ADAMTS12P58397 1594 aa13.56□□□□□ -0.24
LINC02449-202ENST00000399866 CTTNBP2Q8WZ74 1663 aa13.56□□□□□ -0.24
LINC02449-202ENST00000399866 ZNF608Q9ULD9 1512 aaPredicted RBP13.54□□□□□ -0.24
LINC02449-202ENST00000399866 EIF4G3O43432 1585 aaKnown RBP13.54□□□□□ -0.24
LINC02449-202ENST00000399866 TRIM26Q12899 539 aaPredicted RBP13.54□□□□□ -0.24
LINC02449-202ENST00000399866 AQRO60306 1485 aaKnown RBP eCLIP13.54□□□□□ -0.24
LINC02449-202ENST00000399866 GRIN2BQ13224 1484 aa13.54□□□□□ -0.24
LINC02449-202ENST00000399866 PCGF6Q9BYE7 350 aa13.53□□□□□ -0.24
LINC02449-202ENST00000399866 ARHGAP35Q9NRY4 1499 aa13.53□□□□□ -0.24
LINC02449-202ENST00000399866 RANGAP1P46060 587 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms