RNA–Protein interactions for RNA: ENST00000398431.2

TFF3-202, Transcript of trefoil factor 3, humanhuman

TSL 3

Gene TFF3, Length 452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3-202ENST00000398431 NISCHQ9Y2I1 1504 aa30.42■■■□□ 2.46
TFF3-202ENST00000398431 ABCC9O60706 1549 aa27.43■■□□□ 1.98
TFF3-202ENST00000398431 CCDC180Q9P1Z9 1646 aa27.26■■□□□ 1.95
TFF3-202ENST00000398431 RB1CC1Q8TDY2 1594 aa26.01■■□□□ 1.75
TFF3-202ENST00000398431 DNAJC5BQ9UF47 199 aa25.97■■□□□ 1.75
TFF3-202ENST00000398431 NACADO15069 1562 aa25.83■■□□□ 1.73
TFF3-202ENST00000398431 DCAF8L2P0C7V8 631 aa25.75■■□□□ 1.71
TFF3-202ENST00000398431 PABPN1Q86U42 306 aaKnown RBP eCLIP25.58■■□□□ 1.69
TFF3-202ENST00000398431 MYO15BQ96JP2 1530 aa25.46■■□□□ 1.67
TFF3-202ENST00000398431 UNC13AQ9UPW8 1703 aa25.46■■□□□ 1.67
TFF3-202ENST00000398431 BICRAQ9NZM4 1560 aa25.34■■□□□ 1.65
TFF3-202ENST00000398431 ZCCHC6Q5VYS8 1495 aaKnown RBP25.16■■□□□ 1.62
TFF3-202ENST00000398431 DCAF1Q9Y4B6 1507 aa25.1■■□□□ 1.61
TFF3-202ENST00000398431 SHROOM4Q9ULL8 1493 aa24.88■■□□□ 1.57
TFF3-202ENST00000398431 SCRIBQ14160 1630 aa24.85■■□□□ 1.57
TFF3-202ENST00000398431 CC2D2AQ9P2K1 1620 aa24.76■■□□□ 1.55
TFF3-202ENST00000398431 CECR2Q9BXF3 1484 aa24.7■■□□□ 1.55
TFF3-202ENST00000398431 EIF4G1Q04637 1599 aaKnown RBP24.67■■□□□ 1.54
TFF3-202ENST00000398431 NCAPD3P42695 1498 aa23.91■■□□□ 1.42
TFF3-202ENST00000398431 DNAJC5Q9H3Z4 198 aa23.86■■□□□ 1.41
TFF3-202ENST00000398431 ATAD2BQ9ULI0 1458 aa23.81■■□□□ 1.4
TFF3-202ENST00000398431 SMARCA4P51532 1647 aa23.71■■□□□ 1.39
TFF3-202ENST00000398431 SMARCA2P51531 1590 aa23.67■■□□□ 1.38
TFF3-202ENST00000398431 HMGXB3Q12766 1538 aa23.64■■□□□ 1.38
TFF3-202ENST00000398431 CUX2O14529 1486 aa23.64■■□□□ 1.38
TFF3-202ENST00000398431 ERCC6Q03468 1493 aa23.62■■□□□ 1.37
TFF3-202ENST00000398431 BAZ1AQ9NRL2 1556 aaPredicted RBP23.57■■□□□ 1.36
TFF3-202ENST00000398431 NESP48681 1621 aa23.56■■□□□ 1.36
TFF3-202ENST00000398431 BAZ1BQ9UIG0 1483 aaKnown RBP23.52■■□□□ 1.36
TFF3-202ENST00000398431 PEG3Q9GZU2 1588 aa23.5■■□□□ 1.35
TFF3-202ENST00000398431 MROH2BQ7Z745 1585 aa23.45■■□□□ 1.34
TFF3-202ENST00000398431 LAMC3Q9Y6N6 1575 aa23.31■■□□□ 1.32
TFF3-202ENST00000398431 THOC2Q8NI27 1593 aaKnown RBP23.28■■□□□ 1.32
TFF3-202ENST00000398431 PDS5BQ9NTI5 1447 aa23.2■■□□□ 1.3
TFF3-202ENST00000398431 KIF21AQ7Z4S6 1674 aa23.19■■□□□ 1.3
TFF3-202ENST00000398431 CADPSQ9ULU8 1353 aa23.17■■□□□ 1.3
TFF3-202ENST00000398431 WIZO95785 1651 aa23.15■■□□□ 1.3
TFF3-202ENST00000398431 MRC2Q9UBG0 1479 aa22.99■■□□□ 1.27
TFF3-202ENST00000398431 WDR62O43379 1518 aa22.95■■□□□ 1.26
TFF3-202ENST00000398431 RSF1Q96T23 1441 aaPredicted RBP22.94■■□□□ 1.26
TFF3-202ENST00000398431 CFTRP13569 1480 aa22.87■■□□□ 1.25
TFF3-202ENST00000398431 FANCD2Q9BXW9 1451 aa22.87■■□□□ 1.25
TFF3-202ENST00000398431 CEP164Q9UPV0 1460 aa22.87■■□□□ 1.25
TFF3-202ENST00000398431 TOP2AP11388 1531 aaKnown RBP22.81■■□□□ 1.24
TFF3-202ENST00000398431 URB2Q14146 1524 aaKnown RBP22.72■■□□□ 1.23
TFF3-202ENST00000398431 TRIM41Q8WV44 630 aa22.71■■□□□ 1.23
TFF3-202ENST00000398431 CCDC88BA6NC98 1476 aa22.62■■□□□ 1.21
TFF3-202ENST00000398431 OSCARQ8IYS5 282 aa22.62■■□□□ 1.21
TFF3-202ENST00000398431 PRDM2Q13029 1718 aa22.54■■□□□ 1.2
TFF3-202ENST00000398431 ZNF608Q9ULD9 1512 aaPredicted RBP22.47■■□□□ 1.19
TFF3-202ENST00000398431 TOPBP1Q92547 1522 aa22.44■■□□□ 1.18
TFF3-202ENST00000398431 IFT140Q96RY7 1462 aa22.44■■□□□ 1.18
TFF3-202ENST00000398431 ABCC8Q09428 1581 aa22.36■■□□□ 1.17
TFF3-202ENST00000398431 DNMBPQ6XZF7 1577 aa22.31■■□□□ 1.16
TFF3-202ENST00000398431 RIMBP3CA6NJZ7 1639 aa22.28■■□□□ 1.16
TFF3-202ENST00000398431 RIMBP3BA6NNM3 1639 aa22.28■■□□□ 1.16
TFF3-202ENST00000398431 RIMBP3Q9UFD9 1639 aa22.28■■□□□ 1.16
TFF3-202ENST00000398431 AQRO60306 1485 aaKnown RBP eCLIP22.26■■□□□ 1.15
TFF3-202ENST00000398431 EIF4G3O43432 1585 aaKnown RBP22.25■■□□□ 1.15
TFF3-202ENST00000398431 TARBP1Q13395 1621 aaKnown RBP22.24■■□□□ 1.15
TFF3-202ENST00000398431 ARHGEF11O15085 1522 aa22.21■■□□□ 1.15
TFF3-202ENST00000398431 POLA1P09884 1462 aaPredicted RBP22.2■■□□□ 1.14
TFF3-202ENST00000398431 RAD54L2Q9Y4B4 1467 aa22.15■■□□□ 1.14
TFF3-202ENST00000398431 SOGA1O94964 1423 aa22.13■■□□□ 1.13
TFF3-202ENST00000398431 CHD1O14646 1710 aa22.11■■□□□ 1.13
TFF3-202ENST00000398431 CYB5RLQ6IPT4 315 aa22.11■■□□□ 1.13
TFF3-202ENST00000398431 TDRD9Q8NDG6 1382 aaKnown RBP22.11■■□□□ 1.13
TFF3-202ENST00000398431 FBLN2P98095 1184 aa22.1■■□□□ 1.13
TFF3-202ENST00000398431 FGD5Q6ZNL6 1462 aa22.04■■□□□ 1.12
TFF3-202ENST00000398431 CUX1P39880 1505 aa22.02■■□□□ 1.12
TFF3-202ENST00000398431 ARAP1Q96P48 1450 aa22■■□□□ 1.11
TFF3-202ENST00000398431 SNAPC4Q5SXM2 1469 aa21.97■■□□□ 1.11
TFF3-202ENST00000398431 WDR97A6NE52 1622 aa21.94■■□□□ 1.1
TFF3-202ENST00000398431 CHMP7Q8WUX9 453 aaPredicted RBP21.93■■□□□ 1.1
TFF3-202ENST00000398431 CLASP1Q7Z460 1538 aa21.9■■□□□ 1.1
TFF3-202ENST00000398431 GRIN2BQ13224 1484 aa21.9■■□□□ 1.1
TFF3-202ENST00000398431 MAGI1Q96QZ7 1491 aaPredicted RBP21.9■■□□□ 1.1
TFF3-202ENST00000398431 SUPT5HO00267 1087 aaKnown RBP21.85■■□□□ 1.09
TFF3-202ENST00000398431 TRHP20396 242 aaPredicted RBP21.85■■□□□ 1.09
TFF3-202ENST00000398431 SYNJ2O15056 1496 aa21.83■■□□□ 1.09
TFF3-202ENST00000398431 GAPVD1Q14C86 1478 aa21.83■■□□□ 1.08
TFF3-202ENST00000398431 SYNJ1O43426 1573 aa21.82■■□□□ 1.08
TFF3-202ENST00000398431 ABCA10Q8WWZ4 1543 aa21.79■■□□□ 1.08
TFF3-202ENST00000398431 PBRM1Q86U86 1689 aa21.76■■□□□ 1.07
TFF3-202ENST00000398431 ABCA5Q8WWZ7 1642 aa21.74■■□□□ 1.07
TFF3-202ENST00000398431 WRNQ14191 1432 aaPredicted RBP eCLIP21.67■■□□□ 1.06
TFF3-202ENST00000398431 GRIN2AQ12879 1464 aa21.63■■□□□ 1.05
TFF3-202ENST00000398431 TOP2BQ02880 1626 aa21.61■■□□□ 1.05
TFF3-202ENST00000398431 BIVM-ERCC5R4GMW8 1640 aa21.61■■□□□ 1.05
TFF3-202ENST00000398431 ERCC6L2Q5T890 1561 aa21.59■■□□□ 1.05
TFF3-202ENST00000398431 NUP160Q12769 1436 aa21.58■■□□□ 1.05
TFF3-202ENST00000398431 ADAMTS12P58397 1594 aa21.57■■□□□ 1.04
TFF3-202ENST00000398431 CEP170Q5SW79 1584 aa21.56■■□□□ 1.04
TFF3-202ENST00000398431 FHAD1B1AJZ9 1412 aa21.55■■□□□ 1.04
TFF3-202ENST00000398431 ERICH3Q5RHP9 1530 aa21.49■■□□□ 1.03
TFF3-202ENST00000398431 SHROOM2Q13796 1616 aa21.47■■□□□ 1.03
TFF3-202ENST00000398431 JPH4Q96JJ6 628 aa21.41■■□□□ 1.02
TFF3-202ENST00000398431 PRG4Q92954 1404 aaPredicted RBP21.38■■□□□ 1.01
TFF3-202ENST00000398431 IGF1RP08069 1367 aa21.29■■□□□ 1
TFF3-202ENST00000398431 RUSC2Q8N2Y8 1516 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms