RNA–Protein interactions for RNA: ENST00000398193.8

RGPD1-201, Transcript of RANBP2-like and GRIP domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RGPD1, Length 5,425 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RGPD1-201ENST00000398193 NISCHQ9Y2I1 1504 aa16.59■□□□□ 0.25
RGPD1-201ENST00000398193 CCDC180Q9P1Z9 1646 aa14.61□□□□□ -0.07
RGPD1-201ENST00000398193 ZCCHC6Q5VYS8 1495 aaKnown RBP14.01□□□□□ -0.17
RGPD1-201ENST00000398193 DCAF1Q9Y4B6 1507 aa13.92□□□□□ -0.18
RGPD1-201ENST00000398193 MYO15BQ96JP2 1530 aa13.74□□□□□ -0.21
RGPD1-201ENST00000398193 NACADO15069 1562 aa13.49□□□□□ -0.25
RGPD1-201ENST00000398193 RB1CC1Q8TDY2 1594 aa13.3□□□□□ -0.28
RGPD1-201ENST00000398193 ABCC9O60706 1549 aa13.25□□□□□ -0.29
RGPD1-201ENST00000398193 SHROOM4Q9ULL8 1493 aa13.23□□□□□ -0.29
RGPD1-201ENST00000398193 DCAF8L2P0C7V8 631 aa13.18□□□□□ -0.3
RGPD1-201ENST00000398193 SCRIBQ14160 1630 aa13.16□□□□□ -0.3
RGPD1-201ENST00000398193 UNC13AQ9UPW8 1703 aa12.97□□□□□ -0.33
RGPD1-201ENST00000398193 RSF1Q96T23 1441 aaPredicted RBP12.85□□□□□ -0.35
RGPD1-201ENST00000398193 BAZ1AQ9NRL2 1556 aaPredicted RBP12.84□□□□□ -0.35
RGPD1-201ENST00000398193 BICRAQ9NZM4 1560 aa12.81□□□□□ -0.36
RGPD1-201ENST00000398193 SUPT5HO00267 1087 aaKnown RBP12.81□□□□□ -0.36
RGPD1-201ENST00000398193 SMARCA4P51532 1647 aa12.75□□□□□ -0.37
RGPD1-201ENST00000398193 MROH2BQ7Z745 1585 aa12.72□□□□□ -0.37
RGPD1-201ENST00000398193 PEG3Q9GZU2 1588 aa12.7□□□□□ -0.38
RGPD1-201ENST00000398193 CECR2Q9BXF3 1484 aa12.7□□□□□ -0.38
RGPD1-201ENST00000398193 TOP2AP11388 1531 aaKnown RBP12.66□□□□□ -0.38
RGPD1-201ENST00000398193 WIZO95785 1651 aa12.63□□□□□ -0.39
RGPD1-201ENST00000398193 SMARCA2P51531 1590 aa12.55□□□□□ -0.4
RGPD1-201ENST00000398193 EIF4G1Q04637 1599 aaKnown RBP12.52□□□□□ -0.4
RGPD1-201ENST00000398193 CHIC1Q5VXU3 224 aa12.5□□□□□ -0.41
RGPD1-201ENST00000398193 HMGXB3Q12766 1538 aa12.45□□□□□ -0.42
RGPD1-201ENST00000398193 ATAD2BQ9ULI0 1458 aa12.44□□□□□ -0.42
RGPD1-201ENST00000398193 PABPN1Q86U42 306 aaKnown RBP eCLIP12.41□□□□□ -0.42
RGPD1-201ENST00000398193 CCDC88BA6NC98 1476 aa12.4□□□□□ -0.42
RGPD1-201ENST00000398193 NCAPD3P42695 1498 aa12.38□□□□□ -0.43
RGPD1-201ENST00000398193 BAZ1BQ9UIG0 1483 aaKnown RBP12.37□□□□□ -0.43
RGPD1-201ENST00000398193 PRDM2Q13029 1718 aa12.25□□□□□ -0.45
RGPD1-201ENST00000398193 TRIM41Q8WV44 630 aa12.18□□□□□ -0.46
RGPD1-201ENST00000398193 EEA1Q15075 1411 aa12.17□□□□□ -0.46
RGPD1-201ENST00000398193 CC2D2AQ9P2K1 1620 aa12.16□□□□□ -0.46
RGPD1-201ENST00000398193 BIVM-ERCC5R4GMW8 1640 aa12.13□□□□□ -0.47
RGPD1-201ENST00000398193 CFTRP13569 1480 aa12.12□□□□□ -0.47
RGPD1-201ENST00000398193 TOP2BQ02880 1626 aa12.1□□□□□ -0.47
RGPD1-201ENST00000398193 WRNQ14191 1432 aaPredicted RBP eCLIP12.09□□□□□ -0.47
RGPD1-201ENST00000398193 ABCC8Q09428 1581 aa12.09□□□□□ -0.47
RGPD1-201ENST00000398193 SYNJ1O43426 1573 aa12.04□□□□□ -0.48
RGPD1-201ENST00000398193 KIF21BO75037 1637 aa11.99□□□□□ -0.49
RGPD1-201ENST00000398193 CADPSQ9ULU8 1353 aa11.99□□□□□ -0.49
RGPD1-201ENST00000398193 LAMC3Q9Y6N6 1575 aa11.98□□□□□ -0.49
RGPD1-201ENST00000398193 CUX1P39880 1505 aa11.93□□□□□ -0.5
RGPD1-201ENST00000398193 GOLGA3Q08378 1498 aa11.9□□□□□ -0.5
RGPD1-201ENST00000398193 CEP164Q9UPV0 1460 aa11.9□□□□□ -0.5
RGPD1-201ENST00000398193 ERICH3Q5RHP9 1530 aa11.89□□□□□ -0.51
RGPD1-201ENST00000398193 TNIKQ9UKE5 1360 aa11.89□□□□□ -0.51
RGPD1-201ENST00000398193 DNMBPQ6XZF7 1577 aa11.88□□□□□ -0.51
RGPD1-201ENST00000398193 SOGA1O94964 1423 aa11.88□□□□□ -0.51
RGPD1-201ENST00000398193 LOC105371045A0A1W2PR82 267 aa11.85□□□□□ -0.51
RGPD1-201ENST00000398193 FANCD2Q9BXW9 1451 aa11.85□□□□□ -0.51
RGPD1-201ENST00000398193 CSRNP3Q8WYN3 585 aa11.84□□□□□ -0.51
RGPD1-201ENST00000398193 KIF27Q86VH2 1401 aa11.81□□□□□ -0.52
RGPD1-201ENST00000398193 PDS5BQ9NTI5 1447 aa11.8□□□□□ -0.52
RGPD1-201ENST00000398193 PRXQ9BXM0 1461 aa11.79□□□□□ -0.52
RGPD1-201ENST00000398193 RUSC2Q8N2Y8 1516 aa11.78□□□□□ -0.52
RGPD1-201ENST00000398193 WDR97A6NE52 1622 aa11.78□□□□□ -0.52
RGPD1-201ENST00000398193 ABCA10Q8WWZ4 1543 aa11.75□□□□□ -0.53
RGPD1-201ENST00000398193 TOPBP1Q92547 1522 aa11.75□□□□□ -0.53
RGPD1-201ENST00000398193 FGD5Q6ZNL6 1462 aa11.75□□□□□ -0.53
RGPD1-201ENST00000398193 CEP162Q5TB80 1403 aa11.75□□□□□ -0.53
RGPD1-201ENST00000398193 FAM9AQ8IZU1 332 aaPredicted RBP11.74□□□□□ -0.53
RGPD1-201ENST00000398193 CUL7Q14999 1698 aa11.73□□□□□ -0.53
RGPD1-201ENST00000398193 KIF21AQ7Z4S6 1674 aa11.71□□□□□ -0.53
RGPD1-201ENST00000398193 NESP48681 1621 aa11.68□□□□□ -0.54
RGPD1-201ENST00000398193 URB2Q14146 1524 aaKnown RBP11.68□□□□□ -0.54
RGPD1-201ENST00000398193 POLA1P09884 1462 aaPredicted RBP11.68□□□□□ -0.54
RGPD1-201ENST00000398193 RAPGEF2Q9Y4G8 1499 aa11.68□□□□□ -0.54
RGPD1-201ENST00000398193 ABCA5Q8WWZ7 1642 aa11.67□□□□□ -0.54
RGPD1-201ENST00000398193 TRIM26Q12899 539 aaPredicted RBP11.67□□□□□ -0.54
RGPD1-201ENST00000398193 CUX2O14529 1486 aa11.67□□□□□ -0.54
RGPD1-201ENST00000398193 MRC2Q9UBG0 1479 aa11.67□□□□□ -0.54
RGPD1-201ENST00000398193 WDR62O43379 1518 aa11.65□□□□□ -0.54
RGPD1-201ENST00000398193 TARBP1Q13395 1621 aaKnown RBP11.63□□□□□ -0.55
RGPD1-201ENST00000398193 CLIP1P30622 1438 aa11.62□□□□□ -0.55
RGPD1-201ENST00000398193 IGF1RP08069 1367 aa11.62□□□□□ -0.55
RGPD1-201ENST00000398193 VPS8Q8N3P4 1428 aa11.6□□□□□ -0.55
RGPD1-201ENST00000398193 UBTFP17480 764 aaKnown RBP11.59□□□□□ -0.55
RGPD1-201ENST00000398193 CTTNBP2Q8WZ74 1663 aa11.59□□□□□ -0.55
RGPD1-201ENST00000398193 EFCAB5A4FU69 1503 aa11.58□□□□□ -0.56
RGPD1-201ENST00000398193 CARMIL1Q5VZK9 1371 aa11.57□□□□□ -0.56
RGPD1-201ENST00000398193 IFT140Q96RY7 1462 aa11.57□□□□□ -0.56
RGPD1-201ENST00000398193 PBRM1Q86U86 1689 aa11.57□□□□□ -0.56
RGPD1-201ENST00000398193 MAP3K1Q13233 1512 aa11.55□□□□□ -0.56
RGPD1-201ENST00000398193 RAD54L2Q9Y4B4 1467 aa11.55□□□□□ -0.56
RGPD1-201ENST00000398193 THOC2Q8NI27 1593 aaKnown RBP11.55□□□□□ -0.56
RGPD1-201ENST00000398193 ARAP1Q96P48 1450 aa11.54□□□□□ -0.56
RGPD1-201ENST00000398193 GAPVD1Q14C86 1478 aa11.53□□□□□ -0.56
RGPD1-201ENST00000398193 ADAMTS12P58397 1594 aa11.5□□□□□ -0.57
RGPD1-201ENST00000398193 AQRO60306 1485 aaKnown RBP eCLIP11.49□□□□□ -0.57
RGPD1-201ENST00000398193 PCGF6Q9BYE7 350 aa11.49□□□□□ -0.57
RGPD1-201ENST00000398193 ARHGAP35Q9NRY4 1499 aa11.49□□□□□ -0.57
RGPD1-201ENST00000398193 GRIN2BQ13224 1484 aa11.47□□□□□ -0.57
RGPD1-201ENST00000398193 FHAD1B1AJZ9 1412 aa11.47□□□□□ -0.57
RGPD1-201ENST00000398193 SAMD9Q5K651 1589 aa11.47□□□□□ -0.57
RGPD1-201ENST00000398193 HRCP23327 699 aa11.45□□□□□ -0.58
RGPD1-201ENST00000398193 CFAP43Q8NDM7 1665 aa11.45□□□□□ -0.58
RGPD1-201ENST00000398193 ERCC6Q03468 1493 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms