RNA–Protein interactions for RNA: ENST00000398043.2

APTR-201, Transcript of Alu-mediated CDKN1A/p21 transcriptional regulator, humanhuman

TSL 1 (best)

Gene APTR, Length 528 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTR-201ENST00000398043 NISCHQ9Y2I1 1504 aa41.13■■■■■ 4.17
APTR-201ENST00000398043 CCDC180Q9P1Z9 1646 aa36.69■■■■□ 3.46
APTR-201ENST00000398043 ABCC9O60706 1549 aa35.89■■■■□ 3.34
APTR-201ENST00000398043 RB1CC1Q8TDY2 1594 aa34.51■■■■□ 3.12
APTR-201ENST00000398043 NACADO15069 1562 aa34.47■■■■□ 3.11
APTR-201ENST00000398043 MYO15BQ96JP2 1530 aa34.26■■■■□ 3.08
APTR-201ENST00000398043 ZCCHC6Q5VYS8 1495 aaKnown RBP34.24■■■■□ 3.07
APTR-201ENST00000398043 DCAF8L2P0C7V8 631 aa34.2■■■■□ 3.07
APTR-201ENST00000398043 DCAF1Q9Y4B6 1507 aa34.06■■■■□ 3.04
APTR-201ENST00000398043 UNC13AQ9UPW8 1703 aa33.93■■■■□ 3.02
APTR-201ENST00000398043 BICRAQ9NZM4 1560 aa33.58■■■□□ 2.97
APTR-201ENST00000398043 PABPN1Q86U42 306 aaKnown RBP eCLIP33.48■■■□□ 2.95
APTR-201ENST00000398043 SCRIBQ14160 1630 aa33.38■■■□□ 2.93
APTR-201ENST00000398043 SHROOM4Q9ULL8 1493 aa33.13■■■□□ 2.89
APTR-201ENST00000398043 DNAJC5BQ9UF47 199 aa33.13■■■□□ 2.89
APTR-201ENST00000398043 EIF4G1Q04637 1599 aaKnown RBP32.63■■■□□ 2.81
APTR-201ENST00000398043 CC2D2AQ9P2K1 1620 aa32.55■■■□□ 2.8
APTR-201ENST00000398043 CECR2Q9BXF3 1484 aa32.27■■■□□ 2.76
APTR-201ENST00000398043 SMARCA4P51532 1647 aa31.97■■■□□ 2.71
APTR-201ENST00000398043 BAZ1AQ9NRL2 1556 aaPredicted RBP31.86■■■□□ 2.69
APTR-201ENST00000398043 NCAPD3P42695 1498 aa31.8■■■□□ 2.68
APTR-201ENST00000398043 ATAD2BQ9ULI0 1458 aa31.78■■■□□ 2.68
APTR-201ENST00000398043 SMARCA2P51531 1590 aa31.73■■■□□ 2.67
APTR-201ENST00000398043 MROH2BQ7Z745 1585 aa31.7■■■□□ 2.67
APTR-201ENST00000398043 PEG3Q9GZU2 1588 aa31.69■■■□□ 2.66
APTR-201ENST00000398043 HMGXB3Q12766 1538 aa31.65■■■□□ 2.66
APTR-201ENST00000398043 BAZ1BQ9UIG0 1483 aaKnown RBP31.47■■■□□ 2.63
APTR-201ENST00000398043 WIZO95785 1651 aa31.38■■■□□ 2.61
APTR-201ENST00000398043 RSF1Q96T23 1441 aaPredicted RBP31.26■■■□□ 2.6
APTR-201ENST00000398043 NESP48681 1621 aa31.08■■■□□ 2.57
APTR-201ENST00000398043 TOP2AP11388 1531 aaKnown RBP31■■■□□ 2.55
APTR-201ENST00000398043 LAMC3Q9Y6N6 1575 aa30.99■■■□□ 2.55
APTR-201ENST00000398043 ERCC6Q03468 1493 aa30.89■■■□□ 2.53
APTR-201ENST00000398043 CADPSQ9ULU8 1353 aa30.81■■■□□ 2.52
APTR-201ENST00000398043 KIF21AQ7Z4S6 1674 aa30.78■■■□□ 2.52
APTR-201ENST00000398043 CUX2O14529 1486 aa30.7■■■□□ 2.51
APTR-201ENST00000398043 PDS5BQ9NTI5 1447 aa30.69■■■□□ 2.5
APTR-201ENST00000398043 THOC2Q8NI27 1593 aaKnown RBP30.69■■■□□ 2.5
APTR-201ENST00000398043 CFTRP13569 1480 aa30.65■■■□□ 2.5
APTR-201ENST00000398043 CCDC88BA6NC98 1476 aa30.62■■■□□ 2.49
APTR-201ENST00000398043 PRDM2Q13029 1718 aa30.55■■■□□ 2.48
APTR-201ENST00000398043 FANCD2Q9BXW9 1451 aa30.47■■■□□ 2.47
APTR-201ENST00000398043 MRC2Q9UBG0 1479 aa30.44■■■□□ 2.46
APTR-201ENST00000398043 CEP164Q9UPV0 1460 aa30.43■■■□□ 2.46
APTR-201ENST00000398043 WDR62O43379 1518 aa30.39■■■□□ 2.46
APTR-201ENST00000398043 URB2Q14146 1524 aaKnown RBP30.22■■■□□ 2.43
APTR-201ENST00000398043 SUPT5HO00267 1087 aaKnown RBP30.22■■■□□ 2.43
APTR-201ENST00000398043 TOPBP1Q92547 1522 aa30.01■■■□□ 2.39
APTR-201ENST00000398043 ABCC8Q09428 1581 aa29.96■■■□□ 2.39
APTR-201ENST00000398043 DNMBPQ6XZF7 1577 aa29.96■■■□□ 2.39
APTR-201ENST00000398043 DNAJC5Q9H3Z4 198 aa29.9■■■□□ 2.38
APTR-201ENST00000398043 IFT140Q96RY7 1462 aa29.81■■■□□ 2.36
APTR-201ENST00000398043 TARBP1Q13395 1621 aaKnown RBP29.75■■■□□ 2.35
APTR-201ENST00000398043 CUX1P39880 1505 aa29.75■■■□□ 2.35
APTR-201ENST00000398043 POLA1P09884 1462 aaPredicted RBP29.73■■■□□ 2.35
APTR-201ENST00000398043 ZNF608Q9ULD9 1512 aaPredicted RBP29.72■■■□□ 2.35
APTR-201ENST00000398043 FGD5Q6ZNL6 1462 aa29.62■■■□□ 2.33
APTR-201ENST00000398043 EIF4G3O43432 1585 aaKnown RBP29.62■■■□□ 2.33
APTR-201ENST00000398043 RAD54L2Q9Y4B4 1467 aa29.59■■■□□ 2.33
APTR-201ENST00000398043 SOGA1O94964 1423 aa29.55■■■□□ 2.32
APTR-201ENST00000398043 WDR97A6NE52 1622 aa29.52■■■□□ 2.32
APTR-201ENST00000398043 AQRO60306 1485 aaKnown RBP eCLIP29.5■■■□□ 2.31
APTR-201ENST00000398043 BIVM-ERCC5R4GMW8 1640 aa29.5■■■□□ 2.31
APTR-201ENST00000398043 TOP2BQ02880 1626 aa29.46■■■□□ 2.31
APTR-201ENST00000398043 SYNJ1O43426 1573 aa29.45■■■□□ 2.31
APTR-201ENST00000398043 WRNQ14191 1432 aaPredicted RBP eCLIP29.44■■■□□ 2.3
APTR-201ENST00000398043 TDRD9Q8NDG6 1382 aaKnown RBP29.4■■■□□ 2.3
APTR-201ENST00000398043 ABCA10Q8WWZ4 1543 aa29.35■■■□□ 2.29
APTR-201ENST00000398043 OSCARQ8IYS5 282 aa29.33■■■□□ 2.29
APTR-201ENST00000398043 CHD1O14646 1710 aa29.33■■■□□ 2.29
APTR-201ENST00000398043 ABCA5Q8WWZ7 1642 aa29.31■■■□□ 2.28
APTR-201ENST00000398043 PBRM1Q86U86 1689 aa29.28■■■□□ 2.28
APTR-201ENST00000398043 GRIN2BQ13224 1484 aa29.23■■■□□ 2.27
APTR-201ENST00000398043 GAPVD1Q14C86 1478 aa29.23■■■□□ 2.27
APTR-201ENST00000398043 SNAPC4Q5SXM2 1469 aa29.23■■■□□ 2.27
APTR-201ENST00000398043 MAGI1Q96QZ7 1491 aaPredicted RBP29.2■■■□□ 2.26
APTR-201ENST00000398043 SYNJ2O15056 1496 aa29.08■■■□□ 2.25
APTR-201ENST00000398043 FBLN2P98095 1184 aa29.04■■■□□ 2.24
APTR-201ENST00000398043 ERICH3Q5RHP9 1530 aa29■■■□□ 2.23
APTR-201ENST00000398043 RIMBP3CA6NJZ7 1639 aa29■■■□□ 2.23
APTR-201ENST00000398043 RIMBP3BA6NNM3 1639 aa29■■■□□ 2.23
APTR-201ENST00000398043 RIMBP3Q9UFD9 1639 aa29■■■□□ 2.23
APTR-201ENST00000398043 ADAMTS12P58397 1594 aa29■■■□□ 2.23
APTR-201ENST00000398043 CHMP7Q8WUX9 453 aaPredicted RBP28.98■■■□□ 2.23
APTR-201ENST00000398043 CLASP1Q7Z460 1538 aa28.98■■■□□ 2.23
APTR-201ENST00000398043 ARHGEF11O15085 1522 aa28.94■■■□□ 2.22
APTR-201ENST00000398043 GRIN2AQ12879 1464 aa28.89■■■□□ 2.22
APTR-201ENST00000398043 FHAD1B1AJZ9 1412 aa28.88■■■□□ 2.21
APTR-201ENST00000398043 KIF27Q86VH2 1401 aa28.8■■■□□ 2.2
APTR-201ENST00000398043 CEP170Q5SW79 1584 aa28.79■■■□□ 2.2
APTR-201ENST00000398043 NUP160Q12769 1436 aa28.79■■■□□ 2.2
APTR-201ENST00000398043 IGF1RP08069 1367 aa28.75■■■□□ 2.19
APTR-201ENST00000398043 TRIM41Q8WV44 630 aa28.74■■■□□ 2.19
APTR-201ENST00000398043 CUL7Q14999 1698 aa28.73■■■□□ 2.19
APTR-201ENST00000398043 ARAP1Q96P48 1450 aa28.71■■■□□ 2.19
APTR-201ENST00000398043 SHROOM2Q13796 1616 aa28.66■■■□□ 2.18
APTR-201ENST00000398043 RUSC2Q8N2Y8 1516 aa28.59■■■□□ 2.17
APTR-201ENST00000398043 CYB5RLQ6IPT4 315 aa28.58■■■□□ 2.17
APTR-201ENST00000398043 ERCC6L2Q5T890 1561 aa28.56■■■□□ 2.16
APTR-201ENST00000398043 CARMIL1Q5VZK9 1371 aa28.54■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms