RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 NISCHQ9Y2I1 1504 aa41.16■■■■■ 4.18
CUX2-202ENST00000397643 ABCC9O60706 1549 aa37.38■■■■□ 3.57
CUX2-202ENST00000397643 CCDC180Q9P1Z9 1646 aa37.09■■■■□ 3.53
CUX2-202ENST00000397643 RB1CC1Q8TDY2 1594 aa35.42■■■■□ 3.26
CUX2-202ENST00000397643 DNAJC5BQ9UF47 199 aa35.41■■■■□ 3.26
CUX2-202ENST00000397643 NACADO15069 1562 aa35.13■■■■□ 3.21
CUX2-202ENST00000397643 PABPN1Q86U42 306 aaKnown RBP eCLIP34.72■■■■□ 3.15
CUX2-202ENST00000397643 DCAF8L2P0C7V8 631 aa34.71■■■■□ 3.15
CUX2-202ENST00000397643 UNC13AQ9UPW8 1703 aa34.68■■■■□ 3.14
CUX2-202ENST00000397643 MYO15BQ96JP2 1530 aa34.57■■■■□ 3.12
CUX2-202ENST00000397643 BICRAQ9NZM4 1560 aa34.5■■■■□ 3.11
CUX2-202ENST00000397643 ZCCHC6Q5VYS8 1495 aaKnown RBP34.07■■■■□ 3.04
CUX2-202ENST00000397643 DCAF1Q9Y4B6 1507 aa34■■■■□ 3.03
CUX2-202ENST00000397643 SHROOM4Q9ULL8 1493 aa33.96■■■■□ 3.03
CUX2-202ENST00000397643 CC2D2AQ9P2K1 1620 aa33.78■■■■□ 3
CUX2-202ENST00000397643 SCRIBQ14160 1630 aa33.75■■■□□ 2.99
CUX2-202ENST00000397643 CECR2Q9BXF3 1484 aa33.72■■■□□ 2.99
CUX2-202ENST00000397643 EIF4G1Q04637 1599 aaKnown RBP33.64■■■□□ 2.98
CUX2-202ENST00000397643 DNAJC5Q9H3Z4 198 aa32.72■■■□□ 2.83
CUX2-202ENST00000397643 NCAPD3P42695 1498 aa32.45■■■□□ 2.79
CUX2-202ENST00000397643 CUX2O14529 1486 aa32.37■■■□□ 2.77
CUX2-202ENST00000397643 ATAD2BQ9ULI0 1458 aa32.3■■■□□ 2.76
CUX2-202ENST00000397643 ERCC6Q03468 1493 aa32.26■■■□□ 2.75
CUX2-202ENST00000397643 HMGXB3Q12766 1538 aa32.19■■■□□ 2.74
CUX2-202ENST00000397643 SMARCA4P51532 1647 aa32.18■■■□□ 2.74
CUX2-202ENST00000397643 SMARCA2P51531 1590 aa32.16■■■□□ 2.74
CUX2-202ENST00000397643 NESP48681 1621 aa32.05■■■□□ 2.72
CUX2-202ENST00000397643 BAZ1AQ9NRL2 1556 aaPredicted RBP31.94■■■□□ 2.7
CUX2-202ENST00000397643 BAZ1BQ9UIG0 1483 aaKnown RBP31.93■■■□□ 2.7
CUX2-202ENST00000397643 PEG3Q9GZU2 1588 aa31.91■■■□□ 2.7
CUX2-202ENST00000397643 THOC2Q8NI27 1593 aaKnown RBP31.83■■■□□ 2.69
CUX2-202ENST00000397643 LAMC3Q9Y6N6 1575 aa31.75■■■□□ 2.67
CUX2-202ENST00000397643 MROH2BQ7Z745 1585 aa31.72■■■□□ 2.67
CUX2-202ENST00000397643 KIF21AQ7Z4S6 1674 aa31.62■■■□□ 2.65
CUX2-202ENST00000397643 PDS5BQ9NTI5 1447 aa31.54■■■□□ 2.64
CUX2-202ENST00000397643 CADPSQ9ULU8 1353 aa31.41■■■□□ 2.62
CUX2-202ENST00000397643 MRC2Q9UBG0 1479 aa31.33■■■□□ 2.61
CUX2-202ENST00000397643 WIZO95785 1651 aa31.31■■■□□ 2.6
CUX2-202ENST00000397643 WDR62O43379 1518 aa31.3■■■□□ 2.6
CUX2-202ENST00000397643 CEP164Q9UPV0 1460 aa31.12■■■□□ 2.57
CUX2-202ENST00000397643 TRIM41Q8WV44 630 aa31.07■■■□□ 2.56
CUX2-202ENST00000397643 FANCD2Q9BXW9 1451 aa31.07■■■□□ 2.56
CUX2-202ENST00000397643 CFTRP13569 1480 aa31.02■■■□□ 2.56
CUX2-202ENST00000397643 RSF1Q96T23 1441 aaPredicted RBP30.93■■■□□ 2.54
CUX2-202ENST00000397643 TOP2AP11388 1531 aaKnown RBP30.89■■■□□ 2.54
CUX2-202ENST00000397643 URB2Q14146 1524 aaKnown RBP30.87■■■□□ 2.53
CUX2-202ENST00000397643 OSCARQ8IYS5 282 aa30.76■■■□□ 2.51
CUX2-202ENST00000397643 PRDM2Q13029 1718 aa30.67■■■□□ 2.5
CUX2-202ENST00000397643 ZNF608Q9ULD9 1512 aaPredicted RBP30.54■■■□□ 2.48
CUX2-202ENST00000397643 CCDC88BA6NC98 1476 aa30.53■■■□□ 2.48
CUX2-202ENST00000397643 IFT140Q96RY7 1462 aa30.51■■■□□ 2.48
CUX2-202ENST00000397643 RIMBP3CA6NJZ7 1639 aa30.48■■■□□ 2.47
CUX2-202ENST00000397643 RIMBP3BA6NNM3 1639 aa30.48■■■□□ 2.47
CUX2-202ENST00000397643 RIMBP3Q9UFD9 1639 aa30.48■■■□□ 2.47
CUX2-202ENST00000397643 TOPBP1Q92547 1522 aa30.46■■■□□ 2.47
CUX2-202ENST00000397643 ARHGEF11O15085 1522 aa30.36■■■□□ 2.45
CUX2-202ENST00000397643 EIF4G3O43432 1585 aaKnown RBP30.35■■■□□ 2.45
CUX2-202ENST00000397643 ABCC8Q09428 1581 aa30.31■■■□□ 2.44
CUX2-202ENST00000397643 DNMBPQ6XZF7 1577 aa30.31■■■□□ 2.44
CUX2-202ENST00000397643 TARBP1Q13395 1621 aaKnown RBP30.24■■■□□ 2.43
CUX2-202ENST00000397643 AQRO60306 1485 aaKnown RBP eCLIP30.18■■■□□ 2.42
CUX2-202ENST00000397643 CHD1O14646 1710 aa30.17■■■□□ 2.42
CUX2-202ENST00000397643 POLA1P09884 1462 aaPredicted RBP30.13■■■□□ 2.41
CUX2-202ENST00000397643 CYB5RLQ6IPT4 315 aa30.07■■■□□ 2.4
CUX2-202ENST00000397643 ARAP1Q96P48 1450 aa30.06■■■□□ 2.4
CUX2-202ENST00000397643 RAD54L2Q9Y4B4 1467 aa30.01■■■□□ 2.4
CUX2-202ENST00000397643 FBLN2P98095 1184 aa29.94■■■□□ 2.38
CUX2-202ENST00000397643 TDRD9Q8NDG6 1382 aaKnown RBP29.93■■■□□ 2.38
CUX2-202ENST00000397643 SOGA1O94964 1423 aa29.93■■■□□ 2.38
CUX2-202ENST00000397643 SNAPC4Q5SXM2 1469 aa29.88■■■□□ 2.37
CUX2-202ENST00000397643 FGD5Q6ZNL6 1462 aa29.88■■■□□ 2.37
CUX2-202ENST00000397643 WDR97A6NE52 1622 aa29.88■■■□□ 2.37
CUX2-202ENST00000397643 CLASP1Q7Z460 1538 aa29.86■■■□□ 2.37
CUX2-202ENST00000397643 CUX1P39880 1505 aa29.82■■■□□ 2.36
CUX2-202ENST00000397643 TRHP20396 242 aaPredicted RBP29.79■■■□□ 2.36
CUX2-202ENST00000397643 MAGI1Q96QZ7 1491 aaPredicted RBP29.78■■■□□ 2.36
CUX2-202ENST00000397643 SYNJ1O43426 1573 aa29.74■■■□□ 2.35
CUX2-202ENST00000397643 GRIN2BQ13224 1484 aa29.74■■■□□ 2.35
CUX2-202ENST00000397643 SYNJ2O15056 1496 aa29.69■■■□□ 2.34
CUX2-202ENST00000397643 CHMP7Q8WUX9 453 aaPredicted RBP29.69■■■□□ 2.34
CUX2-202ENST00000397643 PBRM1Q86U86 1689 aa29.61■■■□□ 2.33
CUX2-202ENST00000397643 GAPVD1Q14C86 1478 aa29.58■■■□□ 2.33
CUX2-202ENST00000397643 ABCA5Q8WWZ7 1642 aa29.54■■■□□ 2.32
CUX2-202ENST00000397643 ABCA10Q8WWZ4 1543 aa29.53■■■□□ 2.32
CUX2-202ENST00000397643 ERCC6L2Q5T890 1561 aa29.38■■■□□ 2.29
CUX2-202ENST00000397643 GRIN2AQ12879 1464 aa29.37■■■□□ 2.29
CUX2-202ENST00000397643 ADAMTS12P58397 1594 aa29.34■■■□□ 2.29
CUX2-202ENST00000397643 CEP170Q5SW79 1584 aa29.31■■■□□ 2.28
CUX2-202ENST00000397643 NUP160Q12769 1436 aa29.31■■■□□ 2.28
CUX2-202ENST00000397643 WRNQ14191 1432 aaPredicted RBP eCLIP29.29■■■□□ 2.28
CUX2-202ENST00000397643 BIVM-ERCC5R4GMW8 1640 aa29.25■■■□□ 2.27
CUX2-202ENST00000397643 TOP2BQ02880 1626 aa29.23■■■□□ 2.27
CUX2-202ENST00000397643 SHROOM2Q13796 1616 aa29.23■■■□□ 2.27
CUX2-202ENST00000397643 FHAD1B1AJZ9 1412 aa29.2■■■□□ 2.26
CUX2-202ENST00000397643 SUPT5HO00267 1087 aaKnown RBP29.17■■■□□ 2.26
CUX2-202ENST00000397643 AEBP2Q6ZN18 517 aaPredicted RBP29.14■■■□□ 2.26
CUX2-202ENST00000397643 ERICH3Q5RHP9 1530 aa29.14■■■□□ 2.25
CUX2-202ENST00000397643 KIF13AQ9H1H9 1805 aa29.01■■■□□ 2.23
CUX2-202ENST00000397643 PRG4Q92954 1404 aaPredicted RBP29■■■□□ 2.23
CUX2-202ENST00000397643 RUSC2Q8N2Y8 1516 aa28.94■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms