RNA–Protein interactions for RNA: ENST00000397386.7

LMCD1-202, Transcript of LIM and cysteine rich domains 1, humanhuman

TSL 2 BASIC

Gene LMCD1, Length 1,501 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1-202ENST00000397386 NISCHQ9Y2I1 1504 aa29.42■■■□□ 2.3
LMCD1-202ENST00000397386 CCDC180Q9P1Z9 1646 aa25.85■■□□□ 1.73
LMCD1-202ENST00000397386 ZCCHC6Q5VYS8 1495 aaKnown RBP24.67■■□□□ 1.54
LMCD1-202ENST00000397386 ABCC9O60706 1549 aa24.56■■□□□ 1.52
LMCD1-202ENST00000397386 DCAF1Q9Y4B6 1507 aa24.43■■□□□ 1.5
LMCD1-202ENST00000397386 MYO15BQ96JP2 1530 aa24.29■■□□□ 1.48
LMCD1-202ENST00000397386 DCAF8L2P0C7V8 631 aa24.24■■□□□ 1.47
LMCD1-202ENST00000397386 NACADO15069 1562 aa24.15■■□□□ 1.46
LMCD1-202ENST00000397386 RB1CC1Q8TDY2 1594 aa23.99■■□□□ 1.43
LMCD1-202ENST00000397386 SHROOM4Q9ULL8 1493 aa23.6■■□□□ 1.37
LMCD1-202ENST00000397386 SCRIBQ14160 1630 aa23.58■■□□□ 1.37
LMCD1-202ENST00000397386 UNC13AQ9UPW8 1703 aa23.4■■□□□ 1.34
LMCD1-202ENST00000397386 BICRAQ9NZM4 1560 aa23.21■■□□□ 1.31
LMCD1-202ENST00000397386 PABPN1Q86U42 306 aaKnown RBP eCLIP23.07■■□□□ 1.28
LMCD1-202ENST00000397386 CECR2Q9BXF3 1484 aa22.81■■□□□ 1.24
LMCD1-202ENST00000397386 BAZ1AQ9NRL2 1556 aaPredicted RBP22.77■■□□□ 1.24
LMCD1-202ENST00000397386 RSF1Q96T23 1441 aaPredicted RBP22.69■■□□□ 1.22
LMCD1-202ENST00000397386 MROH2BQ7Z745 1585 aa22.67■■□□□ 1.22
LMCD1-202ENST00000397386 SMARCA4P51532 1647 aa22.66■■□□□ 1.22
LMCD1-202ENST00000397386 SUPT5HO00267 1087 aaKnown RBP22.59■■□□□ 1.21
LMCD1-202ENST00000397386 EIF4G1Q04637 1599 aaKnown RBP22.56■■□□□ 1.2
LMCD1-202ENST00000397386 PEG3Q9GZU2 1588 aa22.48■■□□□ 1.19
LMCD1-202ENST00000397386 WIZO95785 1651 aa22.43■■□□□ 1.18
LMCD1-202ENST00000397386 SMARCA2P51531 1590 aa22.4■■□□□ 1.18
LMCD1-202ENST00000397386 ATAD2BQ9ULI0 1458 aa22.37■■□□□ 1.17
LMCD1-202ENST00000397386 NCAPD3P42695 1498 aa22.29■■□□□ 1.16
LMCD1-202ENST00000397386 TOP2AP11388 1531 aaKnown RBP22.28■■□□□ 1.16
LMCD1-202ENST00000397386 CC2D2AQ9P2K1 1620 aa22.27■■□□□ 1.16
LMCD1-202ENST00000397386 HMGXB3Q12766 1538 aa22.24■■□□□ 1.15
LMCD1-202ENST00000397386 BAZ1BQ9UIG0 1483 aaKnown RBP22.23■■□□□ 1.15
LMCD1-202ENST00000397386 DNAJC5BQ9UF47 199 aa22.09■■□□□ 1.13
LMCD1-202ENST00000397386 CCDC88BA6NC98 1476 aa22.01■■□□□ 1.11
LMCD1-202ENST00000397386 CFTRP13569 1480 aa21.69■■□□□ 1.06
LMCD1-202ENST00000397386 CADPSQ9ULU8 1353 aa21.67■■□□□ 1.06
LMCD1-202ENST00000397386 LAMC3Q9Y6N6 1575 aa21.57■■□□□ 1.04
LMCD1-202ENST00000397386 PRDM2Q13029 1718 aa21.54■■□□□ 1.04
LMCD1-202ENST00000397386 CHIC1Q5VXU3 224 aa21.54■■□□□ 1.04
LMCD1-202ENST00000397386 NESP48681 1621 aa21.46■■□□□ 1.03
LMCD1-202ENST00000397386 PDS5BQ9NTI5 1447 aa21.41■■□□□ 1.02
LMCD1-202ENST00000397386 FANCD2Q9BXW9 1451 aa21.39■■□□□ 1.02
LMCD1-202ENST00000397386 ABCC8Q09428 1581 aa21.38■■□□□ 1.01
LMCD1-202ENST00000397386 WRNQ14191 1432 aaPredicted RBP eCLIP21.37■■□□□ 1.01
LMCD1-202ENST00000397386 TRIM41Q8WV44 630 aa21.34■■□□□ 1.01
LMCD1-202ENST00000397386 CEP164Q9UPV0 1460 aa21.3■■□□□ 1
LMCD1-202ENST00000397386 TOP2BQ02880 1626 aa21.25■□□□□ 0.99
LMCD1-202ENST00000397386 SYNJ1O43426 1573 aa21.25■□□□□ 0.99
LMCD1-202ENST00000397386 BIVM-ERCC5R4GMW8 1640 aa21.23■□□□□ 0.99
LMCD1-202ENST00000397386 KIF21AQ7Z4S6 1674 aa21.22■□□□□ 0.99
LMCD1-202ENST00000397386 CUX1P39880 1505 aa21.22■□□□□ 0.99
LMCD1-202ENST00000397386 DNMBPQ6XZF7 1577 aa21.16■□□□□ 0.98
LMCD1-202ENST00000397386 ERCC6Q03468 1493 aa21.13■□□□□ 0.97
LMCD1-202ENST00000397386 TOPBP1Q92547 1522 aa21.13■□□□□ 0.97
LMCD1-202ENST00000397386 MRC2Q9UBG0 1479 aa21.12■□□□□ 0.97
LMCD1-202ENST00000397386 URB2Q14146 1524 aaKnown RBP21.12■□□□□ 0.97
LMCD1-202ENST00000397386 FGD5Q6ZNL6 1462 aa21.05■□□□□ 0.96
LMCD1-202ENST00000397386 WDR62O43379 1518 aa21.03■□□□□ 0.96
LMCD1-202ENST00000397386 THOC2Q8NI27 1593 aaKnown RBP21.01■□□□□ 0.95
LMCD1-202ENST00000397386 POLA1P09884 1462 aaPredicted RBP20.99■□□□□ 0.95
LMCD1-202ENST00000397386 EEA1Q15075 1411 aa20.98■□□□□ 0.95
LMCD1-202ENST00000397386 SOGA1O94964 1423 aa20.94■□□□□ 0.94
LMCD1-202ENST00000397386 ABCA10Q8WWZ4 1543 aa20.9■□□□□ 0.94
LMCD1-202ENST00000397386 KIF27Q86VH2 1401 aa20.88■□□□□ 0.93
LMCD1-202ENST00000397386 RAD54L2Q9Y4B4 1467 aa20.87■□□□□ 0.93
LMCD1-202ENST00000397386 CUX2O14529 1486 aa20.86■□□□□ 0.93
LMCD1-202ENST00000397386 RUSC2Q8N2Y8 1516 aa20.84■□□□□ 0.93
LMCD1-202ENST00000397386 IFT140Q96RY7 1462 aa20.84■□□□□ 0.93
LMCD1-202ENST00000397386 TARBP1Q13395 1621 aaKnown RBP20.84■□□□□ 0.93
LMCD1-202ENST00000397386 WDR97A6NE52 1622 aa20.83■□□□□ 0.92
LMCD1-202ENST00000397386 FAM9AQ8IZU1 332 aaPredicted RBP20.82■□□□□ 0.92
LMCD1-202ENST00000397386 CSRNP3Q8WYN3 585 aa20.82■□□□□ 0.92
LMCD1-202ENST00000397386 ABCA5Q8WWZ7 1642 aa20.73■□□□□ 0.91
LMCD1-202ENST00000397386 IGF1RP08069 1367 aa20.71■□□□□ 0.91
LMCD1-202ENST00000397386 TDRD9Q8NDG6 1382 aaKnown RBP20.71■□□□□ 0.91
LMCD1-202ENST00000397386 GAPVD1Q14C86 1478 aa20.7■□□□□ 0.9
LMCD1-202ENST00000397386 KIF21BO75037 1637 aa20.67■□□□□ 0.9
LMCD1-202ENST00000397386 ERICH3Q5RHP9 1530 aa20.67■□□□□ 0.9
LMCD1-202ENST00000397386 PRXQ9BXM0 1461 aa20.66■□□□□ 0.9
LMCD1-202ENST00000397386 ZNF608Q9ULD9 1512 aaPredicted RBP20.64■□□□□ 0.89
LMCD1-202ENST00000397386 AQRO60306 1485 aaKnown RBP eCLIP20.63■□□□□ 0.89
LMCD1-202ENST00000397386 LOC105371045A0A1W2PR82 267 aa20.62■□□□□ 0.89
LMCD1-202ENST00000397386 GOLGA3Q08378 1498 aa20.6■□□□□ 0.89
LMCD1-202ENST00000397386 GRIN2BQ13224 1484 aa20.6■□□□□ 0.89
LMCD1-202ENST00000397386 CUL7Q14999 1698 aa20.6■□□□□ 0.89
LMCD1-202ENST00000397386 EIF4G3O43432 1585 aaKnown RBP20.6■□□□□ 0.89
LMCD1-202ENST00000397386 CARMIL1Q5VZK9 1371 aa20.59■□□□□ 0.89
LMCD1-202ENST00000397386 PBRM1Q86U86 1689 aa20.57■□□□□ 0.88
LMCD1-202ENST00000397386 RAPGEF2Q9Y4G8 1499 aa20.55■□□□□ 0.88
LMCD1-202ENST00000397386 FHAD1B1AJZ9 1412 aa20.5■□□□□ 0.87
LMCD1-202ENST00000397386 TNIKQ9UKE5 1360 aa20.5■□□□□ 0.87
LMCD1-202ENST00000397386 MAGI1Q96QZ7 1491 aaPredicted RBP20.5■□□□□ 0.87
LMCD1-202ENST00000397386 ADAMTS12P58397 1594 aa20.47■□□□□ 0.87
LMCD1-202ENST00000397386 UBTFP17480 764 aaKnown RBP20.47■□□□□ 0.87
LMCD1-202ENST00000397386 SNAPC4Q5SXM2 1469 aa20.45■□□□□ 0.86
LMCD1-202ENST00000397386 EHMT2Q96KQ7 1210 aa20.44■□□□□ 0.86
LMCD1-202ENST00000397386 SYNJ2O15056 1496 aa20.39■□□□□ 0.86
LMCD1-202ENST00000397386 GRIN2AQ12879 1464 aa20.34■□□□□ 0.85
LMCD1-202ENST00000397386 CEP162Q5TB80 1403 aa20.32■□□□□ 0.84
LMCD1-202ENST00000397386 CHMP7Q8WUX9 453 aaPredicted RBP20.32■□□□□ 0.84
LMCD1-202ENST00000397386 CTTNBP2Q8WZ74 1663 aa20.28■□□□□ 0.84
LMCD1-202ENST00000397386 CLIP1P30622 1438 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms