RNA–Protein interactions for RNA: ENST00000397343.2

PGAM1P4-201, Transcript of phosphoglycerate mutase 1 pseudogene 4, humanhuman

BASIC

Gene PGAM1P4, Length 750 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PGAM1P4-201ENST00000397343 NISCHQ9Y2I1 1504 aa29.05■■■□□ 2.24
PGAM1P4-201ENST00000397343 CCDC180Q9P1Z9 1646 aa25.74■■□□□ 1.71
PGAM1P4-201ENST00000397343 ABCC9O60706 1549 aa25.32■■□□□ 1.64
PGAM1P4-201ENST00000397343 ZCCHC6Q5VYS8 1495 aaKnown RBP24.27■■□□□ 1.48
PGAM1P4-201ENST00000397343 DCAF8L2P0C7V8 631 aa24.27■■□□□ 1.48
PGAM1P4-201ENST00000397343 RB1CC1Q8TDY2 1594 aa24.27■■□□□ 1.48
PGAM1P4-201ENST00000397343 NACADO15069 1562 aa24.22■■□□□ 1.47
PGAM1P4-201ENST00000397343 MYO15BQ96JP2 1530 aa24.07■■□□□ 1.44
PGAM1P4-201ENST00000397343 DCAF1Q9Y4B6 1507 aa24.07■■□□□ 1.44
PGAM1P4-201ENST00000397343 UNC13AQ9UPW8 1703 aa23.84■■□□□ 1.41
PGAM1P4-201ENST00000397343 BICRAQ9NZM4 1560 aa23.67■■□□□ 1.38
PGAM1P4-201ENST00000397343 PABPN1Q86U42 306 aaKnown RBP eCLIP23.6■■□□□ 1.37
PGAM1P4-201ENST00000397343 DNAJC5BQ9UF47 199 aa23.54■■□□□ 1.36
PGAM1P4-201ENST00000397343 SCRIBQ14160 1630 aa23.41■■□□□ 1.34
PGAM1P4-201ENST00000397343 SHROOM4Q9ULL8 1493 aa23.34■■□□□ 1.33
PGAM1P4-201ENST00000397343 EIF4G1Q04637 1599 aaKnown RBP22.99■■□□□ 1.27
PGAM1P4-201ENST00000397343 CC2D2AQ9P2K1 1620 aa22.94■■□□□ 1.26
PGAM1P4-201ENST00000397343 CECR2Q9BXF3 1484 aa22.79■■□□□ 1.24
PGAM1P4-201ENST00000397343 BAZ1AQ9NRL2 1556 aaPredicted RBP22.51■■□□□ 1.19
PGAM1P4-201ENST00000397343 SMARCA4P51532 1647 aa22.42■■□□□ 1.18
PGAM1P4-201ENST00000397343 NCAPD3P42695 1498 aa22.38■■□□□ 1.17
PGAM1P4-201ENST00000397343 MROH2BQ7Z745 1585 aa22.38■■□□□ 1.17
PGAM1P4-201ENST00000397343 ATAD2BQ9ULI0 1458 aa22.34■■□□□ 1.17
PGAM1P4-201ENST00000397343 RSF1Q96T23 1441 aaPredicted RBP22.33■■□□□ 1.17
PGAM1P4-201ENST00000397343 SMARCA2P51531 1590 aa22.27■■□□□ 1.16
PGAM1P4-201ENST00000397343 PEG3Q9GZU2 1588 aa22.25■■□□□ 1.15
PGAM1P4-201ENST00000397343 HMGXB3Q12766 1538 aa22.25■■□□□ 1.15
PGAM1P4-201ENST00000397343 SUPT5HO00267 1087 aaKnown RBP22.2■■□□□ 1.14
PGAM1P4-201ENST00000397343 WIZO95785 1651 aa22.11■■□□□ 1.13
PGAM1P4-201ENST00000397343 BAZ1BQ9UIG0 1483 aaKnown RBP22.09■■□□□ 1.13
PGAM1P4-201ENST00000397343 TOP2AP11388 1531 aaKnown RBP21.96■■□□□ 1.11
PGAM1P4-201ENST00000397343 NESP48681 1621 aa21.9■■□□□ 1.1
PGAM1P4-201ENST00000397343 LAMC3Q9Y6N6 1575 aa21.79■■□□□ 1.08
PGAM1P4-201ENST00000397343 ERCC6Q03468 1493 aa21.77■■□□□ 1.07
PGAM1P4-201ENST00000397343 CCDC88BA6NC98 1476 aa21.73■■□□□ 1.07
PGAM1P4-201ENST00000397343 CUX2O14529 1486 aa21.72■■□□□ 1.07
PGAM1P4-201ENST00000397343 CADPSQ9ULU8 1353 aa21.67■■□□□ 1.06
PGAM1P4-201ENST00000397343 THOC2Q8NI27 1593 aaKnown RBP21.65■■□□□ 1.06
PGAM1P4-201ENST00000397343 KIF21AQ7Z4S6 1674 aa21.64■■□□□ 1.05
PGAM1P4-201ENST00000397343 PDS5BQ9NTI5 1447 aa21.6■■□□□ 1.05
PGAM1P4-201ENST00000397343 CFTRP13569 1480 aa21.53■■□□□ 1.04
PGAM1P4-201ENST00000397343 MRC2Q9UBG0 1479 aa21.43■■□□□ 1.02
PGAM1P4-201ENST00000397343 WDR62O43379 1518 aa21.42■■□□□ 1.02
PGAM1P4-201ENST00000397343 FANCD2Q9BXW9 1451 aa21.41■■□□□ 1.02
PGAM1P4-201ENST00000397343 CEP164Q9UPV0 1460 aa21.38■■□□□ 1.01
PGAM1P4-201ENST00000397343 PRDM2Q13029 1718 aa21.37■■□□□ 1.01
PGAM1P4-201ENST00000397343 DNAJC5Q9H3Z4 198 aa21.32■■□□□ 1
PGAM1P4-201ENST00000397343 URB2Q14146 1524 aaKnown RBP21.27■■□□□ 1
PGAM1P4-201ENST00000397343 ABCC8Q09428 1581 aa21.1■□□□□ 0.97
PGAM1P4-201ENST00000397343 TOPBP1Q92547 1522 aa21.08■□□□□ 0.96
PGAM1P4-201ENST00000397343 WRNQ14191 1432 aaPredicted RBP eCLIP21.07■□□□□ 0.96
PGAM1P4-201ENST00000397343 DNMBPQ6XZF7 1577 aa21.02■□□□□ 0.96
PGAM1P4-201ENST00000397343 TRIM41Q8WV44 630 aa20.98■□□□□ 0.95
PGAM1P4-201ENST00000397343 IFT140Q96RY7 1462 aa20.97■□□□□ 0.95
PGAM1P4-201ENST00000397343 CUX1P39880 1505 aa20.96■□□□□ 0.95
PGAM1P4-201ENST00000397343 CHIC1Q5VXU3 224 aa20.96■□□□□ 0.95
PGAM1P4-201ENST00000397343 ZNF608Q9ULD9 1512 aaPredicted RBP20.94■□□□□ 0.94
PGAM1P4-201ENST00000397343 TARBP1Q13395 1621 aaKnown RBP20.91■□□□□ 0.94
PGAM1P4-201ENST00000397343 TOP2BQ02880 1626 aa20.9■□□□□ 0.94
PGAM1P4-201ENST00000397343 POLA1P09884 1462 aaPredicted RBP20.88■□□□□ 0.93
PGAM1P4-201ENST00000397343 SYNJ1O43426 1573 aa20.88■□□□□ 0.93
PGAM1P4-201ENST00000397343 FGD5Q6ZNL6 1462 aa20.86■□□□□ 0.93
PGAM1P4-201ENST00000397343 BIVM-ERCC5R4GMW8 1640 aa20.85■□□□□ 0.93
PGAM1P4-201ENST00000397343 SOGA1O94964 1423 aa20.84■□□□□ 0.93
PGAM1P4-201ENST00000397343 EIF4G3O43432 1585 aaKnown RBP20.83■□□□□ 0.92
PGAM1P4-201ENST00000397343 RAD54L2Q9Y4B4 1467 aa20.78■□□□□ 0.92
PGAM1P4-201ENST00000397343 AQRO60306 1485 aaKnown RBP eCLIP20.75■□□□□ 0.91
PGAM1P4-201ENST00000397343 OSCARQ8IYS5 282 aa20.7■□□□□ 0.9
PGAM1P4-201ENST00000397343 WDR97A6NE52 1622 aa20.7■□□□□ 0.9
PGAM1P4-201ENST00000397343 ABCA10Q8WWZ4 1543 aa20.69■□□□□ 0.9
PGAM1P4-201ENST00000397343 TDRD9Q8NDG6 1382 aaKnown RBP20.65■□□□□ 0.9
PGAM1P4-201ENST00000397343 KIF27Q86VH2 1401 aa20.64■□□□□ 0.89
PGAM1P4-201ENST00000397343 CHD1O14646 1710 aa20.62■□□□□ 0.89
PGAM1P4-201ENST00000397343 GAPVD1Q14C86 1478 aa20.57■□□□□ 0.88
PGAM1P4-201ENST00000397343 EEA1Q15075 1411 aa20.56■□□□□ 0.88
PGAM1P4-201ENST00000397343 ABCA5Q8WWZ7 1642 aa20.56■□□□□ 0.88
PGAM1P4-201ENST00000397343 SNAPC4Q5SXM2 1469 aa20.55■□□□□ 0.88
PGAM1P4-201ENST00000397343 GRIN2BQ13224 1484 aa20.54■□□□□ 0.88
PGAM1P4-201ENST00000397343 MAGI1Q96QZ7 1491 aaPredicted RBP20.52■□□□□ 0.88
PGAM1P4-201ENST00000397343 PBRM1Q86U86 1689 aa20.51■□□□□ 0.87
PGAM1P4-201ENST00000397343 FAM9AQ8IZU1 332 aaPredicted RBP20.5■□□□□ 0.87
PGAM1P4-201ENST00000397343 RIMBP3CA6NJZ7 1639 aa20.49■□□□□ 0.87
PGAM1P4-201ENST00000397343 RIMBP3BA6NNM3 1639 aa20.49■□□□□ 0.87
PGAM1P4-201ENST00000397343 RIMBP3Q9UFD9 1639 aa20.49■□□□□ 0.87
PGAM1P4-201ENST00000397343 CSRNP3Q8WYN3 585 aa20.49■□□□□ 0.87
PGAM1P4-201ENST00000397343 IGF1RP08069 1367 aa20.48■□□□□ 0.87
PGAM1P4-201ENST00000397343 RUSC2Q8N2Y8 1516 aa20.47■□□□□ 0.87
PGAM1P4-201ENST00000397343 ARHGEF11O15085 1522 aa20.46■□□□□ 0.87
PGAM1P4-201ENST00000397343 ERICH3Q5RHP9 1530 aa20.45■□□□□ 0.86
PGAM1P4-201ENST00000397343 SYNJ2O15056 1496 aa20.44■□□□□ 0.86
PGAM1P4-201ENST00000397343 CLASP1Q7Z460 1538 aa20.43■□□□□ 0.86
PGAM1P4-201ENST00000397343 CARMIL1Q5VZK9 1371 aa20.39■□□□□ 0.85
PGAM1P4-201ENST00000397343 FBLN2P98095 1184 aa20.39■□□□□ 0.85
PGAM1P4-201ENST00000397343 CHMP7Q8WUX9 453 aaPredicted RBP20.38■□□□□ 0.85
PGAM1P4-201ENST00000397343 FHAD1B1AJZ9 1412 aa20.37■□□□□ 0.85
PGAM1P4-201ENST00000397343 ADAMTS12P58397 1594 aa20.35■□□□□ 0.85
PGAM1P4-201ENST00000397343 ARAP1Q96P48 1450 aa20.3■□□□□ 0.84
PGAM1P4-201ENST00000397343 CUL7Q14999 1698 aa20.3■□□□□ 0.84
PGAM1P4-201ENST00000397343 GRIN2AQ12879 1464 aa20.3■□□□□ 0.84
PGAM1P4-201ENST00000397343 PRXQ9BXM0 1461 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms