RNA–Protein interactions for RNA: ENST00000395721.6

PTPN20-205, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN20, Length 2,779 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-205ENST00000395721 NISCHQ9Y2I1 1504 aa21.66■■□□□ 1.06
PTPN20-205ENST00000395721 CCDC180Q9P1Z9 1646 aa19.38■□□□□ 0.69
PTPN20-205ENST00000395721 ABCC9O60706 1549 aa19.2■□□□□ 0.66
PTPN20-205ENST00000395721 RB1CC1Q8TDY2 1594 aa18.37■□□□□ 0.53
PTPN20-205ENST00000395721 NACADO15069 1562 aa18.28■□□□□ 0.52
PTPN20-205ENST00000395721 DCAF8L2P0C7V8 631 aa18.23■□□□□ 0.51
PTPN20-205ENST00000395721 MYO15BQ96JP2 1530 aa18.07■□□□□ 0.48
PTPN20-205ENST00000395721 ZCCHC6Q5VYS8 1495 aaKnown RBP18■□□□□ 0.47
PTPN20-205ENST00000395721 DCAF1Q9Y4B6 1507 aa17.91■□□□□ 0.46
PTPN20-205ENST00000395721 PABPN1Q86U42 306 aaKnown RBP eCLIP17.89■□□□□ 0.45
PTPN20-205ENST00000395721 UNC13AQ9UPW8 1703 aa17.88■□□□□ 0.45
PTPN20-205ENST00000395721 BICRAQ9NZM4 1560 aa17.76■□□□□ 0.43
PTPN20-205ENST00000395721 DNAJC5BQ9UF47 199 aa17.76■□□□□ 0.43
PTPN20-205ENST00000395721 SCRIBQ14160 1630 aa17.67■□□□□ 0.42
PTPN20-205ENST00000395721 SHROOM4Q9ULL8 1493 aa17.61■□□□□ 0.41
PTPN20-205ENST00000395721 EIF4G1Q04637 1599 aaKnown RBP17.34■□□□□ 0.37
PTPN20-205ENST00000395721 CC2D2AQ9P2K1 1620 aa17.33■□□□□ 0.36
PTPN20-205ENST00000395721 CECR2Q9BXF3 1484 aa17.28■□□□□ 0.36
PTPN20-205ENST00000395721 SMARCA4P51532 1647 aa16.86■□□□□ 0.29
PTPN20-205ENST00000395721 NCAPD3P42695 1498 aa16.84■□□□□ 0.29
PTPN20-205ENST00000395721 ATAD2BQ9ULI0 1458 aa16.83■□□□□ 0.29
PTPN20-205ENST00000395721 SMARCA2P51531 1590 aa16.82■□□□□ 0.28
PTPN20-205ENST00000395721 BAZ1AQ9NRL2 1556 aaPredicted RBP16.82■□□□□ 0.28
PTPN20-205ENST00000395721 HMGXB3Q12766 1538 aa16.76■□□□□ 0.27
PTPN20-205ENST00000395721 BAZ1BQ9UIG0 1483 aaKnown RBP16.71■□□□□ 0.27
PTPN20-205ENST00000395721 MROH2BQ7Z745 1585 aa16.68■□□□□ 0.26
PTPN20-205ENST00000395721 PEG3Q9GZU2 1588 aa16.68■□□□□ 0.26
PTPN20-205ENST00000395721 ERCC6Q03468 1493 aa16.6■□□□□ 0.25
PTPN20-205ENST00000395721 NESP48681 1621 aa16.51■□□□□ 0.23
PTPN20-205ENST00000395721 WIZO95785 1651 aa16.49■□□□□ 0.23
PTPN20-205ENST00000395721 CUX2O14529 1486 aa16.48■□□□□ 0.23
PTPN20-205ENST00000395721 LAMC3Q9Y6N6 1575 aa16.46■□□□□ 0.23
PTPN20-205ENST00000395721 RSF1Q96T23 1441 aaPredicted RBP16.4■□□□□ 0.22
PTPN20-205ENST00000395721 PDS5BQ9NTI5 1447 aa16.37■□□□□ 0.21
PTPN20-205ENST00000395721 CADPSQ9ULU8 1353 aa16.36■□□□□ 0.21
PTPN20-205ENST00000395721 TOP2AP11388 1531 aaKnown RBP16.33■□□□□ 0.2
PTPN20-205ENST00000395721 THOC2Q8NI27 1593 aaKnown RBP16.32■□□□□ 0.2
PTPN20-205ENST00000395721 KIF21AQ7Z4S6 1674 aa16.32■□□□□ 0.2
PTPN20-205ENST00000395721 MRC2Q9UBG0 1479 aa16.22■□□□□ 0.19
PTPN20-205ENST00000395721 DNAJC5Q9H3Z4 198 aa16.22■□□□□ 0.19
PTPN20-205ENST00000395721 CEP164Q9UPV0 1460 aa16.2■□□□□ 0.18
PTPN20-205ENST00000395721 CFTRP13569 1480 aa16.2■□□□□ 0.18
PTPN20-205ENST00000395721 FANCD2Q9BXW9 1451 aa16.18■□□□□ 0.18
PTPN20-205ENST00000395721 WDR62O43379 1518 aa16.15■□□□□ 0.18
PTPN20-205ENST00000395721 CCDC88BA6NC98 1476 aa16.11■□□□□ 0.17
PTPN20-205ENST00000395721 PRDM2Q13029 1718 aa16.06■□□□□ 0.16
PTPN20-205ENST00000395721 URB2Q14146 1524 aaKnown RBP16.02■□□□□ 0.15
PTPN20-205ENST00000395721 ABCC8Q09428 1581 aa15.89■□□□□ 0.13
PTPN20-205ENST00000395721 TOPBP1Q92547 1522 aa15.89■□□□□ 0.13
PTPN20-205ENST00000395721 IFT140Q96RY7 1462 aa15.87■□□□□ 0.13
PTPN20-205ENST00000395721 DNMBPQ6XZF7 1577 aa15.86■□□□□ 0.13
PTPN20-205ENST00000395721 SUPT5HO00267 1087 aaKnown RBP15.85■□□□□ 0.13
PTPN20-205ENST00000395721 ZNF608Q9ULD9 1512 aaPredicted RBP15.78■□□□□ 0.12
PTPN20-205ENST00000395721 OSCARQ8IYS5 282 aa15.75■□□□□ 0.11
PTPN20-205ENST00000395721 POLA1P09884 1462 aaPredicted RBP15.73■□□□□ 0.11
PTPN20-205ENST00000395721 EIF4G3O43432 1585 aaKnown RBP15.73■□□□□ 0.11
PTPN20-205ENST00000395721 TARBP1Q13395 1621 aaKnown RBP15.71■□□□□ 0.11
PTPN20-205ENST00000395721 SOGA1O94964 1423 aa15.68■□□□□ 0.1
PTPN20-205ENST00000395721 FGD5Q6ZNL6 1462 aa15.68■□□□□ 0.1
PTPN20-205ENST00000395721 CUX1P39880 1505 aa15.67■□□□□ 0.1
PTPN20-205ENST00000395721 RAD54L2Q9Y4B4 1467 aa15.67■□□□□ 0.1
PTPN20-205ENST00000395721 AQRO60306 1485 aaKnown RBP eCLIP15.66■□□□□ 0.1
PTPN20-205ENST00000395721 TRIM41Q8WV44 630 aa15.64■□□□□ 0.09
PTPN20-205ENST00000395721 TDRD9Q8NDG6 1382 aaKnown RBP15.61■□□□□ 0.09
PTPN20-205ENST00000395721 WDR97A6NE52 1622 aa15.61■□□□□ 0.09
PTPN20-205ENST00000395721 CHD1O14646 1710 aa15.57■□□□□ 0.08
PTPN20-205ENST00000395721 FBLN2P98095 1184 aa15.57■□□□□ 0.08
PTPN20-205ENST00000395721 SNAPC4Q5SXM2 1469 aa15.54■□□□□ 0.08
PTPN20-205ENST00000395721 GRIN2BQ13224 1484 aa15.54■□□□□ 0.08
PTPN20-205ENST00000395721 RIMBP3CA6NJZ7 1639 aa15.52■□□□□ 0.07
PTPN20-205ENST00000395721 RIMBP3BA6NNM3 1639 aa15.52■□□□□ 0.07
PTPN20-205ENST00000395721 RIMBP3Q9UFD9 1639 aa15.52■□□□□ 0.07
PTPN20-205ENST00000395721 MAGI1Q96QZ7 1491 aaPredicted RBP15.51■□□□□ 0.07
PTPN20-205ENST00000395721 WRNQ14191 1432 aaPredicted RBP eCLIP15.51■□□□□ 0.07
PTPN20-205ENST00000395721 ABCA10Q8WWZ4 1543 aa15.5■□□□□ 0.07
PTPN20-205ENST00000395721 GAPVD1Q14C86 1478 aa15.49■□□□□ 0.07
PTPN20-205ENST00000395721 ARHGEF11O15085 1522 aa15.49■□□□□ 0.07
PTPN20-205ENST00000395721 CHMP7Q8WUX9 453 aaPredicted RBP15.48■□□□□ 0.07
PTPN20-205ENST00000395721 BIVM-ERCC5R4GMW8 1640 aa15.48■□□□□ 0.07
PTPN20-205ENST00000395721 TOP2BQ02880 1626 aa15.47■□□□□ 0.07
PTPN20-205ENST00000395721 PBRM1Q86U86 1689 aa15.47■□□□□ 0.07
PTPN20-205ENST00000395721 SYNJ1O43426 1573 aa15.46■□□□□ 0.07
PTPN20-205ENST00000395721 ABCA5Q8WWZ7 1642 aa15.45■□□□□ 0.06
PTPN20-205ENST00000395721 SYNJ2O15056 1496 aa15.45■□□□□ 0.06
PTPN20-205ENST00000395721 CLASP1Q7Z460 1538 aa15.4■□□□□ 0.06
PTPN20-205ENST00000395721 CYB5RLQ6IPT4 315 aa15.36■□□□□ 0.05
PTPN20-205ENST00000395721 ARAP1Q96P48 1450 aa15.35■□□□□ 0.05
PTPN20-205ENST00000395721 ADAMTS12P58397 1594 aa15.35■□□□□ 0.05
PTPN20-205ENST00000395721 GRIN2AQ12879 1464 aa15.32■□□□□ 0.04
PTPN20-205ENST00000395721 ERICH3Q5RHP9 1530 aa15.32■□□□□ 0.04
PTPN20-205ENST00000395721 FHAD1B1AJZ9 1412 aa15.31■□□□□ 0.04
PTPN20-205ENST00000395721 NUP160Q12769 1436 aa15.26■□□□□ 0.03
PTPN20-205ENST00000395721 CEP170Q5SW79 1584 aa15.24■□□□□ 0.03
PTPN20-205ENST00000395721 KIF27Q86VH2 1401 aa15.21■□□□□ 0.03
PTPN20-205ENST00000395721 TRHP20396 242 aaPredicted RBP15.17■□□□□ 0.02
PTPN20-205ENST00000395721 SHROOM2Q13796 1616 aa15.15■□□□□ 0.02
PTPN20-205ENST00000395721 ERCC6L2Q5T890 1561 aa15.15■□□□□ 0.02
PTPN20-205ENST00000395721 CUL7Q14999 1698 aa15.14■□□□□ 0.01
PTPN20-205ENST00000395721 IGF1RP08069 1367 aa15.13■□□□□ 0.01
PTPN20-205ENST00000395721 RUSC2Q8N2Y8 1516 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms