RNA–Protein interactions for RNA: ENST00000395453.2

SCAF11-203, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SCAF11, Length 1,336 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-203ENST00000395453 NISCHQ9Y2I1 1504 aa33.63■■■□□ 2.97
SCAF11-203ENST00000395453 AEBP2Q6ZN18 517 aaPredicted RBP32.57■■■□□ 2.8
SCAF11-203ENST00000395453 ABCC9O60706 1549 aa30.84■■■□□ 2.53
SCAF11-203ENST00000395453 CHIC1Q5VXU3 224 aa30.74■■■□□ 2.51
SCAF11-203ENST00000395453 CCDC180Q9P1Z9 1646 aa30.32■■■□□ 2.44
SCAF11-203ENST00000395453 DNAJC5BQ9UF47 199 aa29.4■■■□□ 2.3
SCAF11-203ENST00000395453 RB1CC1Q8TDY2 1594 aa29.15■■■□□ 2.26
SCAF11-203ENST00000395453 NACADO15069 1562 aa28.83■■■□□ 2.21
SCAF11-203ENST00000395453 PABPN1Q86U42 306 aaKnown RBP eCLIP28.66■■■□□ 2.18
SCAF11-203ENST00000395453 DCAF8L2P0C7V8 631 aa28.61■■■□□ 2.17
SCAF11-203ENST00000395453 UNC13AQ9UPW8 1703 aa28.4■■■□□ 2.14
SCAF11-203ENST00000395453 MYO15BQ96JP2 1530 aa28.28■■■□□ 2.12
SCAF11-203ENST00000395453 BICRAQ9NZM4 1560 aa28.28■■■□□ 2.12
SCAF11-203ENST00000395453 SENP3Q9H4L4 574 aaPredicted RBP27.95■■■□□ 2.07
SCAF11-203ENST00000395453 ZCCHC6Q5VYS8 1495 aaKnown RBP27.91■■■□□ 2.06
SCAF11-203ENST00000395453 SHROOM4Q9ULL8 1493 aa27.91■■■□□ 2.06
SCAF11-203ENST00000395453 CECR2Q9BXF3 1484 aa27.86■■■□□ 2.05
SCAF11-203ENST00000395453 CC2D2AQ9P2K1 1620 aa27.82■■■□□ 2.04
SCAF11-203ENST00000395453 DCAF1Q9Y4B6 1507 aa27.82■■■□□ 2.04
SCAF11-203ENST00000395453 EIF4G1Q04637 1599 aaKnown RBP27.65■■■□□ 2.02
SCAF11-203ENST00000395453 SCRIBQ14160 1630 aa27.59■■■□□ 2.01
SCAF11-203ENST00000395453 PHF23Q9BUL5 403 aaPredicted RBP27.48■■□□□ 1.99
SCAF11-203ENST00000395453 DNAJC5Q9H3Z4 198 aa27.41■■□□□ 1.98
SCAF11-203ENST00000395453 CUX2O14529 1486 aa26.83■■□□□ 1.88
SCAF11-203ENST00000395453 ERCC6Q03468 1493 aa26.69■■□□□ 1.86
SCAF11-203ENST00000395453 NCAPD3P42695 1498 aa26.63■■□□□ 1.85
SCAF11-203ENST00000395453 ATAD2BQ9ULI0 1458 aa26.47■■□□□ 1.83
SCAF11-203ENST00000395453 SMARCA2P51531 1590 aa26.37■■□□□ 1.81
SCAF11-203ENST00000395453 HMGXB3Q12766 1538 aa26.36■■□□□ 1.81
SCAF11-203ENST00000395453 NESP48681 1621 aa26.33■■□□□ 1.81
SCAF11-203ENST00000395453 SMARCA4P51532 1647 aa26.27■■□□□ 1.8
SCAF11-203ENST00000395453 BAZ1BQ9UIG0 1483 aaKnown RBP26.18■■□□□ 1.78
SCAF11-203ENST00000395453 THOC2Q8NI27 1593 aaKnown RBP26.15■■□□□ 1.78
SCAF11-203ENST00000395453 BAZ1AQ9NRL2 1556 aaPredicted RBP26.1■■□□□ 1.77
SCAF11-203ENST00000395453 LAMC3Q9Y6N6 1575 aa26.1■■□□□ 1.77
SCAF11-203ENST00000395453 PEG3Q9GZU2 1588 aa26.05■■□□□ 1.76
SCAF11-203ENST00000395453 PDS5BQ9NTI5 1447 aa26.01■■□□□ 1.75
SCAF11-203ENST00000395453 FOXD1Q16676 465 aa25.99■■□□□ 1.75
SCAF11-203ENST00000395453 TRIM41Q8WV44 630 aa25.98■■□□□ 1.75
SCAF11-203ENST00000395453 KIF21AQ7Z4S6 1674 aa25.94■■□□□ 1.74
SCAF11-203ENST00000395453 MROH2BQ7Z745 1585 aa25.9■■□□□ 1.74
SCAF11-203ENST00000395453 CADPSQ9ULU8 1353 aa25.81■■□□□ 1.72
SCAF11-203ENST00000395453 MRC2Q9UBG0 1479 aa25.78■■□□□ 1.72
SCAF11-203ENST00000395453 WDR62O43379 1518 aa25.71■■□□□ 1.71
SCAF11-203ENST00000395453 WIZO95785 1651 aa25.59■■□□□ 1.69
SCAF11-203ENST00000395453 CEP164Q9UPV0 1460 aa25.58■■□□□ 1.69
SCAF11-203ENST00000395453 OSCARQ8IYS5 282 aa25.55■■□□□ 1.68
SCAF11-203ENST00000395453 FANCD2Q9BXW9 1451 aa25.5■■□□□ 1.67
SCAF11-203ENST00000395453 RSF1Q96T23 1441 aaPredicted RBP25.47■■□□□ 1.67
SCAF11-203ENST00000395453 CFTRP13569 1480 aa25.39■■□□□ 1.66
SCAF11-203ENST00000395453 URB2Q14146 1524 aaKnown RBP25.29■■□□□ 1.64
SCAF11-203ENST00000395453 TOP2AP11388 1531 aaKnown RBP25.28■■□□□ 1.64
SCAF11-203ENST00000395453 RIMBP3CA6NJZ7 1639 aa25.19■■□□□ 1.62
SCAF11-203ENST00000395453 RIMBP3BA6NNM3 1639 aa25.19■■□□□ 1.62
SCAF11-203ENST00000395453 RIMBP3Q9UFD9 1639 aa25.19■■□□□ 1.62
SCAF11-203ENST00000395453 IFT140Q96RY7 1462 aa25.1■■□□□ 1.61
SCAF11-203ENST00000395453 ARHGEF11O15085 1522 aa25.08■■□□□ 1.6
SCAF11-203ENST00000395453 ZNF608Q9ULD9 1512 aaPredicted RBP25.06■■□□□ 1.6
SCAF11-203ENST00000395453 PRDM2Q13029 1718 aa25.03■■□□□ 1.6
SCAF11-203ENST00000395453 CCDC88BA6NC98 1476 aa25.02■■□□□ 1.6
SCAF11-203ENST00000395453 CYB5RLQ6IPT4 315 aa24.97■■□□□ 1.59
SCAF11-203ENST00000395453 TOPBP1Q92547 1522 aa24.95■■□□□ 1.58
SCAF11-203ENST00000395453 ABCC8Q09428 1581 aa24.9■■□□□ 1.58
SCAF11-203ENST00000395453 EIF4G3O43432 1585 aaKnown RBP24.89■■□□□ 1.57
SCAF11-203ENST00000395453 TRHP20396 242 aaPredicted RBP24.87■■□□□ 1.57
SCAF11-203ENST00000395453 DNMBPQ6XZF7 1577 aa24.8■■□□□ 1.56
SCAF11-203ENST00000395453 AQRO60306 1485 aaKnown RBP eCLIP24.8■■□□□ 1.56
SCAF11-203ENST00000395453 ARAP1Q96P48 1450 aa24.8■■□□□ 1.56
SCAF11-203ENST00000395453 CHD1O14646 1710 aa24.78■■□□□ 1.56
SCAF11-203ENST00000395453 FBLN2P98095 1184 aa24.78■■□□□ 1.56
SCAF11-203ENST00000395453 TARBP1Q13395 1621 aaKnown RBP24.74■■□□□ 1.55
SCAF11-203ENST00000395453 POLA1P09884 1462 aaPredicted RBP24.65■■□□□ 1.54
SCAF11-203ENST00000395453 TDRD9Q8NDG6 1382 aaKnown RBP24.57■■□□□ 1.52
SCAF11-203ENST00000395453 SOGA1O94964 1423 aa24.57■■□□□ 1.52
SCAF11-203ENST00000395453 RAD54L2Q9Y4B4 1467 aa24.57■■□□□ 1.52
SCAF11-203ENST00000395453 MSH5O43196 834 aa24.55■■□□□ 1.52
SCAF11-203ENST00000395453 CLASP1Q7Z460 1538 aa24.52■■□□□ 1.52
SCAF11-203ENST00000395453 SNAPC4Q5SXM2 1469 aa24.52■■□□□ 1.52
SCAF11-203ENST00000395453 CHMP7Q8WUX9 453 aaPredicted RBP24.52■■□□□ 1.52
SCAF11-203ENST00000395453 WDR97A6NE52 1622 aa24.49■■□□□ 1.51
SCAF11-203ENST00000395453 SYNJ1O43426 1573 aa24.48■■□□□ 1.51
SCAF11-203ENST00000395453 PLPPR3Q6T4P5 718 aa24.47■■□□□ 1.51
SCAF11-203ENST00000395453 MAGI1Q96QZ7 1491 aaPredicted RBP24.46■■□□□ 1.51
SCAF11-203ENST00000395453 SUPT5HO00267 1087 aaKnown RBP24.44■■□□□ 1.5
SCAF11-203ENST00000395453 FGD5Q6ZNL6 1462 aa24.43■■□□□ 1.5
SCAF11-203ENST00000395453 GRIN2BQ13224 1484 aa24.4■■□□□ 1.5
SCAF11-203ENST00000395453 SYNJ2O15056 1496 aa24.38■■□□□ 1.49
SCAF11-203ENST00000395453 POTEDQ86YR6 584 aa24.34■■□□□ 1.49
SCAF11-203ENST00000395453 GAPVD1Q14C86 1478 aa24.32■■□□□ 1.48
SCAF11-203ENST00000395453 CUX1P39880 1505 aa24.32■■□□□ 1.48
SCAF11-203ENST00000395453 PIAS4Q8N2W9 510 aaPredicted RBP24.24■■□□□ 1.47
SCAF11-203ENST00000395453 PBRM1Q86U86 1689 aa24.21■■□□□ 1.47
SCAF11-203ENST00000395453 ABCA10Q8WWZ4 1543 aa24.14■■□□□ 1.46
SCAF11-203ENST00000395453 ABCA5Q8WWZ7 1642 aa24.11■■□□□ 1.45
SCAF11-203ENST00000395453 GRIN2AQ12879 1464 aa24.08■■□□□ 1.45
SCAF11-203ENST00000395453 ERCC6L2Q5T890 1561 aa24.08■■□□□ 1.45
SCAF11-203ENST00000395453 PPP6R1Q9UPN7 881 aa24.06■■□□□ 1.44
SCAF11-203ENST00000395453 CEP170Q5SW79 1584 aa24.02■■□□□ 1.44
SCAF11-203ENST00000395453 NUP160Q12769 1436 aa24.02■■□□□ 1.44
SCAF11-203ENST00000395453 WRNQ14191 1432 aaPredicted RBP eCLIP24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms