RNA–Protein interactions for RNA: ENST00000394921.8

PMS2P3-201, Transcript of PMS1 homolog 2, mismatch repair system component pseudogene 3, humanhuman

TSL 2

Gene PMS2P3, Length 1,316 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS2P3-201ENST00000394921 NISCHQ9Y2I1 1504 aa57■■■■■ 6.72
PMS2P3-201ENST00000394921 CCDC180Q9P1Z9 1646 aa50.92■■■■■ 5.74
PMS2P3-201ENST00000394921 ABCC9O60706 1549 aa50.39■■■■■ 5.66
PMS2P3-201ENST00000394921 RB1CC1Q8TDY2 1594 aa48.19■■■■■ 5.3
PMS2P3-201ENST00000394921 NACADO15069 1562 aa48■■■■■ 5.27
PMS2P3-201ENST00000394921 DCAF8L2P0C7V8 631 aa47.78■■■■■ 5.24
PMS2P3-201ENST00000394921 MYO15BQ96JP2 1530 aa47.54■■■■■ 5.2
PMS2P3-201ENST00000394921 ZCCHC6Q5VYS8 1495 aaKnown RBP47.36■■■■■ 5.17
PMS2P3-201ENST00000394921 UNC13AQ9UPW8 1703 aa47.17■■■■■ 5.14
PMS2P3-201ENST00000394921 DCAF1Q9Y4B6 1507 aa47.13■■■■■ 5.14
PMS2P3-201ENST00000394921 PABPN1Q86U42 306 aaKnown RBP eCLIP46.99■■■■■ 5.11
PMS2P3-201ENST00000394921 DNAJC5BQ9UF47 199 aa46.85■■■■■ 5.09
PMS2P3-201ENST00000394921 BICRAQ9NZM4 1560 aa46.83■■■■■ 5.09
PMS2P3-201ENST00000394921 SCRIBQ14160 1630 aa46.42■■■■■ 5.02
PMS2P3-201ENST00000394921 SHROOM4Q9ULL8 1493 aa46.21■■■■■ 4.99
PMS2P3-201ENST00000394921 EIF4G1Q04637 1599 aaKnown RBP45.6■■■■■ 4.89
PMS2P3-201ENST00000394921 CC2D2AQ9P2K1 1620 aa45.56■■■■■ 4.88
PMS2P3-201ENST00000394921 CECR2Q9BXF3 1484 aa45.33■■■■■ 4.85
PMS2P3-201ENST00000394921 SMARCA4P51532 1647 aa44.35■■■■■ 4.69
PMS2P3-201ENST00000394921 NCAPD3P42695 1498 aa44.32■■■■■ 4.69
PMS2P3-201ENST00000394921 ATAD2BQ9ULI0 1458 aa44.27■■■■■ 4.68
PMS2P3-201ENST00000394921 BAZ1AQ9NRL2 1556 aaPredicted RBP44.18■■■■■ 4.66
PMS2P3-201ENST00000394921 SMARCA2P51531 1590 aa44.14■■■■■ 4.66
PMS2P3-201ENST00000394921 HMGXB3Q12766 1538 aa44.04■■■■■ 4.64
PMS2P3-201ENST00000394921 MROH2BQ7Z745 1585 aa43.93■■■■■ 4.62
PMS2P3-201ENST00000394921 PEG3Q9GZU2 1588 aa43.93■■■■■ 4.62
PMS2P3-201ENST00000394921 BAZ1BQ9UIG0 1483 aaKnown RBP43.83■■■■■ 4.61
PMS2P3-201ENST00000394921 NESP48681 1621 aa43.47■■■■■ 4.55
PMS2P3-201ENST00000394921 WIZO95785 1651 aa43.43■■■■■ 4.54
PMS2P3-201ENST00000394921 ERCC6Q03468 1493 aa43.42■■■■■ 4.54
PMS2P3-201ENST00000394921 LAMC3Q9Y6N6 1575 aa43.22■■■■■ 4.51
PMS2P3-201ENST00000394921 RSF1Q96T23 1441 aaPredicted RBP43.21■■■■■ 4.51
PMS2P3-201ENST00000394921 CUX2O14529 1486 aa43.21■■■■■ 4.51
PMS2P3-201ENST00000394921 CADPSQ9ULU8 1353 aa42.98■■■■■ 4.47
PMS2P3-201ENST00000394921 THOC2Q8NI27 1593 aaKnown RBP42.93■■■■■ 4.46
PMS2P3-201ENST00000394921 PDS5BQ9NTI5 1447 aa42.93■■■■■ 4.46
PMS2P3-201ENST00000394921 KIF21AQ7Z4S6 1674 aa42.92■■■■■ 4.46
PMS2P3-201ENST00000394921 TOP2AP11388 1531 aaKnown RBP42.91■■■■■ 4.46
PMS2P3-201ENST00000394921 CFTRP13569 1480 aa42.62■■■■■ 4.41
PMS2P3-201ENST00000394921 DNAJC5Q9H3Z4 198 aa42.6■■■■■ 4.41
PMS2P3-201ENST00000394921 MRC2Q9UBG0 1479 aa42.55■■■■■ 4.4
PMS2P3-201ENST00000394921 FANCD2Q9BXW9 1451 aa42.49■■■■■ 4.39
PMS2P3-201ENST00000394921 CEP164Q9UPV0 1460 aa42.47■■■■■ 4.39
PMS2P3-201ENST00000394921 WDR62O43379 1518 aa42.45■■■■■ 4.39
PMS2P3-201ENST00000394921 CCDC88BA6NC98 1476 aa42.42■■■■■ 4.38
PMS2P3-201ENST00000394921 PRDM2Q13029 1718 aa42.25■■■■■ 4.35
PMS2P3-201ENST00000394921 URB2Q14146 1524 aaKnown RBP42.14■■■■■ 4.34
PMS2P3-201ENST00000394921 TOPBP1Q92547 1522 aa41.76■■■■■ 4.28
PMS2P3-201ENST00000394921 ABCC8Q09428 1581 aa41.67■■■■■ 4.26
PMS2P3-201ENST00000394921 DNMBPQ6XZF7 1577 aa41.65■■■■■ 4.26
PMS2P3-201ENST00000394921 IFT140Q96RY7 1462 aa41.62■■■■■ 4.25
PMS2P3-201ENST00000394921 SUPT5HO00267 1087 aaKnown RBP41.62■■■■■ 4.25
PMS2P3-201ENST00000394921 ZNF608Q9ULD9 1512 aaPredicted RBP41.53■■■■■ 4.24
PMS2P3-201ENST00000394921 TARBP1Q13395 1621 aaKnown RBP41.37■■■■■ 4.21
PMS2P3-201ENST00000394921 POLA1P09884 1462 aaPredicted RBP41.37■■■■■ 4.21
PMS2P3-201ENST00000394921 EIF4G3O43432 1585 aaKnown RBP41.32■■■■■ 4.2
PMS2P3-201ENST00000394921 OSCARQ8IYS5 282 aa41.29■■■■■ 4.2
PMS2P3-201ENST00000394921 CUX1P39880 1505 aa41.25■■■■■ 4.19
PMS2P3-201ENST00000394921 RAD54L2Q9Y4B4 1467 aa41.22■■■■■ 4.19
PMS2P3-201ENST00000394921 AQRO60306 1485 aaKnown RBP eCLIP41.2■■■■■ 4.191e-6■■■■■ 43.9
PMS2P3-201ENST00000394921 FGD5Q6ZNL6 1462 aa41.18■■■■■ 4.18
PMS2P3-201ENST00000394921 SOGA1O94964 1423 aa41.16■■■■■ 4.18
PMS2P3-201ENST00000394921 TDRD9Q8NDG6 1382 aaKnown RBP41.03■■■■■ 4.16
PMS2P3-201ENST00000394921 WDR97A6NE52 1622 aa40.96■■■■■ 4.15
PMS2P3-201ENST00000394921 CHD1O14646 1710 aa40.92■■■■■ 4.14
PMS2P3-201ENST00000394921 TRIM41Q8WV44 630 aa40.89■■■■■ 4.14
PMS2P3-201ENST00000394921 SNAPC4Q5SXM2 1469 aa40.8■■■■■ 4.12
PMS2P3-201ENST00000394921 ABCA10Q8WWZ4 1543 aa40.76■■■■■ 4.12
PMS2P3-201ENST00000394921 RIMBP3CA6NJZ7 1639 aa40.76■■■■■ 4.11
PMS2P3-201ENST00000394921 RIMBP3BA6NNM3 1639 aa40.76■■■■■ 4.11
PMS2P3-201ENST00000394921 RIMBP3Q9UFD9 1639 aa40.76■■■■■ 4.11
PMS2P3-201ENST00000394921 FBLN2P98095 1184 aa40.75■■■■■ 4.11
PMS2P3-201ENST00000394921 GRIN2BQ13224 1484 aa40.75■■■■■ 4.11
PMS2P3-201ENST00000394921 BIVM-ERCC5R4GMW8 1640 aa40.73■■■■■ 4.11
PMS2P3-201ENST00000394921 WRNQ14191 1432 aaPredicted RBP eCLIP40.72■■■■■ 4.11
PMS2P3-201ENST00000394921 TOP2BQ02880 1626 aa40.72■■■■■ 4.11
PMS2P3-201ENST00000394921 MAGI1Q96QZ7 1491 aaPredicted RBP40.71■■■■■ 4.11
PMS2P3-201ENST00000394921 SYNJ1O43426 1573 aa40.7■■■■■ 4.11
PMS2P3-201ENST00000394921 ARHGEF11O15085 1522 aa40.68■■■■■ 4.1
PMS2P3-201ENST00000394921 GAPVD1Q14C86 1478 aa40.67■■■■■ 4.1
PMS2P3-201ENST00000394921 ABCA5Q8WWZ7 1642 aa40.66■■■■■ 4.1
PMS2P3-201ENST00000394921 PBRM1Q86U86 1689 aa40.65■■■■■ 4.1
PMS2P3-201ENST00000394921 CHMP7Q8WUX9 453 aaPredicted RBP40.56■■■■■ 4.08
PMS2P3-201ENST00000394921 SYNJ2O15056 1496 aa40.56■■■■■ 4.08
PMS2P3-201ENST00000394921 CLASP1Q7Z460 1538 aa40.48■■■■■ 4.07
PMS2P3-201ENST00000394921 ARAP1Q96P48 1450 aa40.33■■■■■ 4.05
PMS2P3-201ENST00000394921 ADAMTS12P58397 1594 aa40.3■■■■■ 4.04
PMS2P3-201ENST00000394921 CYB5RLQ6IPT4 315 aa40.3■■■■■ 4.04
PMS2P3-201ENST00000394921 GRIN2AQ12879 1464 aa40.24■■■■■ 4.03
PMS2P3-201ENST00000394921 ERICH3Q5RHP9 1530 aa40.23■■■■■ 4.03
PMS2P3-201ENST00000394921 FHAD1B1AJZ9 1412 aa40.19■■■■■ 4.02
PMS2P3-201ENST00000394921 NUP160Q12769 1436 aa40.1■■■■■ 4.01
PMS2P3-201ENST00000394921 CEP170Q5SW79 1584 aa40.09■■■■■ 4.01
PMS2P3-201ENST00000394921 ERCC6L2Q5T890 1561 aa39.9■■■■□ 3.98
PMS2P3-201ENST00000394921 KIF27Q86VH2 1401 aa39.9■■■■□ 3.98
PMS2P3-201ENST00000394921 SHROOM2Q13796 1616 aa39.88■■■■□ 3.97
PMS2P3-201ENST00000394921 IGF1RP08069 1367 aa39.86■■■■□ 3.97
PMS2P3-201ENST00000394921 CUL7Q14999 1698 aa39.74■■■■□ 3.95
PMS2P3-201ENST00000394921 RUSC2Q8N2Y8 1516 aa39.72■■■■□ 3.95
PMS2P3-201ENST00000394921 JPH4Q96JJ6 628 aa39.65■■■■□ 3.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms