RNA–Protein interactions for RNA: ENST00000394082.8

SNRPA1-202, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-202ENST00000394082 NISCHQ9Y2I1 1504 aa43.97■■■■■ 4.63
SNRPA1-202ENST00000394082 CCDC180Q9P1Z9 1646 aa39.49■■■■□ 3.91
SNRPA1-202ENST00000394082 ABCC9O60706 1549 aa39.33■■■■□ 3.89
SNRPA1-202ENST00000394082 RB1CC1Q8TDY2 1594 aa37.56■■■■□ 3.6
SNRPA1-202ENST00000394082 NACADO15069 1562 aa37.35■■■■□ 3.57
SNRPA1-202ENST00000394082 MYO15BQ96JP2 1530 aa36.94■■■■□ 3.5
SNRPA1-202ENST00000394082 DCAF8L2P0C7V8 631 aa36.93■■■■□ 3.5
SNRPA1-202ENST00000394082 DNAJC5BQ9UF47 199 aa36.91■■■■□ 3.5
SNRPA1-202ENST00000394082 UNC13AQ9UPW8 1703 aa36.63■■■■□ 3.45
SNRPA1-202ENST00000394082 PABPN1Q86U42 306 aaKnown RBP eCLIP36.59■■■■□ 3.45
SNRPA1-202ENST00000394082 ZCCHC6Q5VYS8 1495 aaKnown RBP36.44■■■■□ 3.42
SNRPA1-202ENST00000394082 BICRAQ9NZM4 1560 aa36.44■■■■□ 3.42
SNRPA1-202ENST00000394082 DCAF1Q9Y4B6 1507 aa36.43■■■■□ 3.42
SNRPA1-202ENST00000394082 SHROOM4Q9ULL8 1493 aa36.11■■■■□ 3.37
SNRPA1-202ENST00000394082 SCRIBQ14160 1630 aa35.83■■■■□ 3.33
SNRPA1-202ENST00000394082 CC2D2AQ9P2K1 1620 aa35.59■■■■□ 3.29
SNRPA1-202ENST00000394082 EIF4G1Q04637 1599 aaKnown RBP35.55■■■■□ 3.28
SNRPA1-202ENST00000394082 CECR2Q9BXF3 1484 aa35.49■■■■□ 3.27
SNRPA1-202ENST00000394082 NCAPD3P42695 1498 aa34.49■■■■□ 3.11
SNRPA1-202ENST00000394082 ATAD2BQ9ULI0 1458 aa34.33■■■■□ 3.09
SNRPA1-202ENST00000394082 SMARCA4P51532 1647 aa34.27■■■■□ 3.08
SNRPA1-202ENST00000394082 SMARCA2P51531 1590 aa34.26■■■■□ 3.07
SNRPA1-202ENST00000394082 HMGXB3Q12766 1538 aa34.22■■■■□ 3.07
SNRPA1-202ENST00000394082 BAZ1AQ9NRL2 1556 aaPredicted RBP34.15■■■■□ 3.06
SNRPA1-202ENST00000394082 CUX2O14529 1486 aa34.05■■■■□ 3.04
SNRPA1-202ENST00000394082 PEG3Q9GZU2 1588 aa34.03■■■■□ 3.04
SNRPA1-202ENST00000394082 ERCC6Q03468 1493 aa34■■■■□ 3.03
SNRPA1-202ENST00000394082 DNAJC5Q9H3Z4 198 aa33.99■■■■□ 3.03
SNRPA1-202ENST00000394082 BAZ1BQ9UIG0 1483 aaKnown RBP33.96■■■■□ 3.03
SNRPA1-202ENST00000394082 MROH2BQ7Z745 1585 aa33.81■■■■□ 3
SNRPA1-202ENST00000394082 NESP48681 1621 aa33.79■■■■□ 3
SNRPA1-202ENST00000394082 LAMC3Q9Y6N6 1575 aa33.69■■■□□ 2.98
SNRPA1-202ENST00000394082 THOC2Q8NI27 1593 aaKnown RBP33.51■■■□□ 2.96
SNRPA1-202ENST00000394082 PDS5BQ9NTI5 1447 aa33.49■■■□□ 2.95
SNRPA1-202ENST00000394082 CADPSQ9ULU8 1353 aa33.4■■■□□ 2.94
SNRPA1-202ENST00000394082 WIZO95785 1651 aa33.38■■■□□ 2.93
SNRPA1-202ENST00000394082 KIF21AQ7Z4S6 1674 aa33.36■■■□□ 2.93
SNRPA1-202ENST00000394082 RSF1Q96T23 1441 aaPredicted RBP33.16■■■□□ 2.9
SNRPA1-202ENST00000394082 MRC2Q9UBG0 1479 aa33.16■■■□□ 2.9
SNRPA1-202ENST00000394082 WDR62O43379 1518 aa33.11■■■□□ 2.89
SNRPA1-202ENST00000394082 CFTRP13569 1480 aa33.04■■■□□ 2.88
SNRPA1-202ENST00000394082 TOP2AP11388 1531 aaKnown RBP33.03■■■□□ 2.88
SNRPA1-202ENST00000394082 CEP164Q9UPV0 1460 aa33.02■■■□□ 2.88
SNRPA1-202ENST00000394082 FANCD2Q9BXW9 1451 aa32.99■■■□□ 2.87
SNRPA1-202ENST00000394082 URB2Q14146 1524 aaKnown RBP32.69■■■□□ 2.82
SNRPA1-202ENST00000394082 PRDM2Q13029 1718 aa32.66■■■□□ 2.82
SNRPA1-202ENST00000394082 CCDC88BA6NC98 1476 aa32.63■■■□□ 2.81
SNRPA1-202ENST00000394082 OSCARQ8IYS5 282 aa32.45■■■□□ 2.79
SNRPA1-202ENST00000394082 IFT140Q96RY7 1462 aa32.4■■■□□ 2.78
SNRPA1-202ENST00000394082 ABCC8Q09428 1581 aa32.39■■■□□ 2.78
SNRPA1-202ENST00000394082 TOPBP1Q92547 1522 aa32.36■■■□□ 2.77
SNRPA1-202ENST00000394082 TRIM41Q8WV44 630 aa32.33■■■□□ 2.77
SNRPA1-202ENST00000394082 ZNF608Q9ULD9 1512 aaPredicted RBP32.26■■■□□ 2.75
SNRPA1-202ENST00000394082 DNMBPQ6XZF7 1577 aa32.25■■■□□ 2.75
SNRPA1-202ENST00000394082 EIF4G3O43432 1585 aaKnown RBP32.1■■■□□ 2.73
SNRPA1-202ENST00000394082 TARBP1Q13395 1621 aaKnown RBP32.08■■■□□ 2.73
SNRPA1-202ENST00000394082 POLA1P09884 1462 aaPredicted RBP32.03■■■□□ 2.72
SNRPA1-202ENST00000394082 AQRO60306 1485 aaKnown RBP eCLIP31.97■■■□□ 2.718e-7■■□□□ 14.1
SNRPA1-202ENST00000394082 RIMBP3CA6NJZ7 1639 aa31.97■■■□□ 2.71
SNRPA1-202ENST00000394082 RIMBP3BA6NNM3 1639 aa31.97■■■□□ 2.71
SNRPA1-202ENST00000394082 RIMBP3Q9UFD9 1639 aa31.97■■■□□ 2.71
SNRPA1-202ENST00000394082 ARHGEF11O15085 1522 aa31.9■■■□□ 2.7
SNRPA1-202ENST00000394082 SOGA1O94964 1423 aa31.88■■■□□ 2.69
SNRPA1-202ENST00000394082 WDR97A6NE52 1622 aa31.87■■■□□ 2.69
SNRPA1-202ENST00000394082 RAD54L2Q9Y4B4 1467 aa31.84■■■□□ 2.69
SNRPA1-202ENST00000394082 CHD1O14646 1710 aa31.83■■■□□ 2.69
SNRPA1-202ENST00000394082 FGD5Q6ZNL6 1462 aa31.8■■■□□ 2.68
SNRPA1-202ENST00000394082 CUX1P39880 1505 aa31.78■■■□□ 2.68
SNRPA1-202ENST00000394082 TDRD9Q8NDG6 1382 aaKnown RBP31.77■■■□□ 2.68
SNRPA1-202ENST00000394082 FBLN2P98095 1184 aa31.7■■■□□ 2.67
SNRPA1-202ENST00000394082 MAGI1Q96QZ7 1491 aaPredicted RBP31.66■■■□□ 2.66
SNRPA1-202ENST00000394082 SNAPC4Q5SXM2 1469 aa31.65■■■□□ 2.66
SNRPA1-202ENST00000394082 GRIN2BQ13224 1484 aa31.63■■■□□ 2.65
SNRPA1-202ENST00000394082 CYB5RLQ6IPT4 315 aa31.61■■■□□ 2.65
SNRPA1-202ENST00000394082 ARAP1Q96P48 1450 aa31.57■■■□□ 2.64
SNRPA1-202ENST00000394082 CHMP7Q8WUX9 453 aaPredicted RBP31.56■■■□□ 2.64
SNRPA1-202ENST00000394082 CLASP1Q7Z460 1538 aa31.54■■■□□ 2.64
SNRPA1-202ENST00000394082 SUPT5HO00267 1087 aaKnown RBP31.54■■■□□ 2.64
SNRPA1-202ENST00000394082 SYNJ2O15056 1496 aa31.53■■■□□ 2.64
SNRPA1-202ENST00000394082 SYNJ1O43426 1573 aa31.52■■■□□ 2.64
SNRPA1-202ENST00000394082 ABCA10Q8WWZ4 1543 aa31.51■■■□□ 2.63
SNRPA1-202ENST00000394082 GAPVD1Q14C86 1478 aa31.51■■■□□ 2.63
SNRPA1-202ENST00000394082 PBRM1Q86U86 1689 aa31.44■■■□□ 2.62
SNRPA1-202ENST00000394082 ABCA5Q8WWZ7 1642 aa31.43■■■□□ 2.62
SNRPA1-202ENST00000394082 WRNQ14191 1432 aaPredicted RBP eCLIP31.38■■■□□ 2.61
SNRPA1-202ENST00000394082 TOP2BQ02880 1626 aa31.31■■■□□ 2.6
SNRPA1-202ENST00000394082 BIVM-ERCC5R4GMW8 1640 aa31.31■■■□□ 2.6
SNRPA1-202ENST00000394082 TRHP20396 242 aaPredicted RBP31.22■■■□□ 2.59
SNRPA1-202ENST00000394082 GRIN2AQ12879 1464 aa31.21■■■□□ 2.59
SNRPA1-202ENST00000394082 ADAMTS12P58397 1594 aa31.17■■■□□ 2.58
SNRPA1-202ENST00000394082 NUP160Q12769 1436 aa31.15■■■□□ 2.58
SNRPA1-202ENST00000394082 FHAD1B1AJZ9 1412 aa31.14■■■□□ 2.58
SNRPA1-202ENST00000394082 ERICH3Q5RHP9 1530 aa31.13■■■□□ 2.57
SNRPA1-202ENST00000394082 CEP170Q5SW79 1584 aa31.06■■■□□ 2.56
SNRPA1-202ENST00000394082 SHROOM2Q13796 1616 aa30.99■■■□□ 2.55
SNRPA1-202ENST00000394082 ERCC6L2Q5T890 1561 aa30.96■■■□□ 2.55
SNRPA1-202ENST00000394082 JPH4Q96JJ6 628 aa30.79■■■□□ 2.52
SNRPA1-202ENST00000394082 PRG4Q92954 1404 aaPredicted RBP30.78■■■□□ 2.52
SNRPA1-202ENST00000394082 RUSC2Q8N2Y8 1516 aa30.73■■■□□ 2.51
SNRPA1-202ENST00000394082 KIF27Q86VH2 1401 aa30.71■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms