RNA–Protein interactions for RNA: ENST00000393091.6

USP44-202, Transcript of ubiquitin specific peptidase 44, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP44, Length 3,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP44-202ENST00000393091 NISCHQ9Y2I1 1504 aa32.15■■■□□ 2.74
USP44-202ENST00000393091 CCDC180Q9P1Z9 1646 aa28.7■■■□□ 2.18
USP44-202ENST00000393091 ABCC9O60706 1549 aa27.02■■□□□ 1.92
USP44-202ENST00000393091 ZCCHC6Q5VYS8 1495 aaKnown RBP26.94■■□□□ 1.9
USP44-202ENST00000393091 MYO15BQ96JP2 1530 aa26.92■■□□□ 1.9
USP44-202ENST00000393091 DCAF1Q9Y4B6 1507 aa26.91■■□□□ 1.9
USP44-202ENST00000393091 NACADO15069 1562 aa26.72■■□□□ 1.87
USP44-202ENST00000393091 RB1CC1Q8TDY2 1594 aa26.57■■□□□ 1.84
USP44-202ENST00000393091 UNC13AQ9UPW8 1703 aa26.11■■□□□ 1.77
USP44-202ENST00000393091 DCAF8L2P0C7V8 631 aa25.85■■□□□ 1.73
USP44-202ENST00000393091 SHROOM4Q9ULL8 1493 aa25.82■■□□□ 1.72
USP44-202ENST00000393091 BICRAQ9NZM4 1560 aa25.79■■□□□ 1.72
USP44-202ENST00000393091 SCRIBQ14160 1630 aa25.76■■□□□ 1.71
USP44-202ENST00000393091 PABPN1Q86U42 306 aaKnown RBP eCLIP25.12■■□□□ 1.61
USP44-202ENST00000393091 EIF4G1Q04637 1599 aaKnown RBP24.97■■□□□ 1.59
USP44-202ENST00000393091 BAZ1AQ9NRL2 1556 aaPredicted RBP24.91■■□□□ 1.58
USP44-202ENST00000393091 SMARCA4P51532 1647 aa24.9■■□□□ 1.58
USP44-202ENST00000393091 PEG3Q9GZU2 1588 aa24.86■■□□□ 1.57
USP44-202ENST00000393091 CECR2Q9BXF3 1484 aa24.8■■□□□ 1.56
USP44-202ENST00000393091 CC2D2AQ9P2K1 1620 aa24.74■■□□□ 1.55
USP44-202ENST00000393091 MROH2BQ7Z745 1585 aa24.68■■□□□ 1.54
USP44-202ENST00000393091 SMARCA2P51531 1590 aa24.65■■□□□ 1.54
USP44-202ENST00000393091 HMGXB3Q12766 1538 aa24.6■■□□□ 1.53
USP44-202ENST00000393091 NCAPD3P42695 1498 aa24.57■■□□□ 1.52
USP44-202ENST00000393091 ATAD2BQ9ULI0 1458 aa24.56■■□□□ 1.52
USP44-202ENST00000393091 RSF1Q96T23 1441 aaPredicted RBP24.54■■□□□ 1.52
USP44-202ENST00000393091 WIZO95785 1651 aa24.45■■□□□ 1.51
USP44-202ENST00000393091 DNAJC5BQ9UF47 199 aa24.36■■□□□ 1.49
USP44-202ENST00000393091 TOP2AP11388 1531 aaKnown RBP24.35■■□□□ 1.49
USP44-202ENST00000393091 BAZ1BQ9UIG0 1483 aaKnown RBP24.3■■□□□ 1.48
USP44-202ENST00000393091 PRDM2Q13029 1718 aa23.97■■□□□ 1.43
USP44-202ENST00000393091 LAMC3Q9Y6N6 1575 aa23.91■■□□□ 1.42
USP44-202ENST00000393091 CCDC88BA6NC98 1476 aa23.9■■□□□ 1.42
USP44-202ENST00000393091 CFTRP13569 1480 aa23.79■■□□□ 1.4
USP44-202ENST00000393091 CADPSQ9ULU8 1353 aa23.72■■□□□ 1.39
USP44-202ENST00000393091 SUPT5HO00267 1087 aaKnown RBP23.67■■□□□ 1.38
USP44-202ENST00000393091 NESP48681 1621 aa23.57■■□□□ 1.36
USP44-202ENST00000393091 KIF21AQ7Z4S6 1674 aa23.56■■□□□ 1.36
USP44-202ENST00000393091 PDS5BQ9NTI5 1447 aa23.53■■□□□ 1.36
USP44-202ENST00000393091 THOC2Q8NI27 1593 aaKnown RBP23.46■■□□□ 1.35
USP44-202ENST00000393091 FANCD2Q9BXW9 1451 aa23.44■■□□□ 1.34
USP44-202ENST00000393091 CEP164Q9UPV0 1460 aa23.39■■□□□ 1.33
USP44-202ENST00000393091 WDR62O43379 1518 aa23.37■■□□□ 1.33
USP44-202ENST00000393091 ABCC8Q09428 1581 aa23.33■■□□□ 1.32
USP44-202ENST00000393091 MRC2Q9UBG0 1479 aa23.33■■□□□ 1.32
USP44-202ENST00000393091 BIVM-ERCC5R4GMW8 1640 aa23.29■■□□□ 1.32
USP44-202ENST00000393091 DNMBPQ6XZF7 1577 aa23.29■■□□□ 1.32
USP44-202ENST00000393091 ERCC6Q03468 1493 aa23.26■■□□□ 1.31
USP44-202ENST00000393091 URB2Q14146 1524 aaKnown RBP23.23■■□□□ 1.31
USP44-202ENST00000393091 CUX2O14529 1486 aa23.22■■□□□ 1.31
USP44-202ENST00000393091 TOP2BQ02880 1626 aa23.2■■□□□ 1.3
USP44-202ENST00000393091 TOPBP1Q92547 1522 aa23.17■■□□□ 1.3
USP44-202ENST00000393091 CUX1P39880 1505 aa23.17■■□□□ 1.3
USP44-202ENST00000393091 WDR97A6NE52 1622 aa23.11■■□□□ 1.29
USP44-202ENST00000393091 SYNJ1O43426 1573 aa23.09■■□□□ 1.29
USP44-202ENST00000393091 WRNQ14191 1432 aaPredicted RBP eCLIP23.06■■□□□ 1.28
USP44-202ENST00000393091 TARBP1Q13395 1621 aaKnown RBP23.04■■□□□ 1.28
USP44-202ENST00000393091 POLA1P09884 1462 aaPredicted RBP22.97■■□□□ 1.27
USP44-202ENST00000393091 IFT140Q96RY7 1462 aa22.96■■□□□ 1.27
USP44-202ENST00000393091 FGD5Q6ZNL6 1462 aa22.94■■□□□ 1.26
USP44-202ENST00000393091 ABCA10Q8WWZ4 1543 aa22.89■■□□□ 1.26
USP44-202ENST00000393091 ABCA5Q8WWZ7 1642 aa22.85■■□□□ 1.25
USP44-202ENST00000393091 SOGA1O94964 1423 aa22.78■■□□□ 1.24
USP44-202ENST00000393091 EIF4G3O43432 1585 aaKnown RBP22.76■■□□□ 1.23
USP44-202ENST00000393091 PBRM1Q86U86 1689 aa22.75■■□□□ 1.23
USP44-202ENST00000393091 RAD54L2Q9Y4B4 1467 aa22.72■■□□□ 1.23
USP44-202ENST00000393091 ERICH3Q5RHP9 1530 aa22.68■■□□□ 1.22
USP44-202ENST00000393091 ZNF608Q9ULD9 1512 aaPredicted RBP22.65■■□□□ 1.22
USP44-202ENST00000393091 CHIC1Q5VXU3 224 aa22.63■■□□□ 1.21
USP44-202ENST00000393091 CUL7Q14999 1698 aa22.6■■□□□ 1.21
USP44-202ENST00000393091 GAPVD1Q14C86 1478 aa22.59■■□□□ 1.21
USP44-202ENST00000393091 GRIN2BQ13224 1484 aa22.58■■□□□ 1.21
USP44-202ENST00000393091 EEA1Q15075 1411 aa22.58■■□□□ 1.2
USP44-202ENST00000393091 MAGI1Q96QZ7 1491 aaPredicted RBP22.57■■□□□ 1.2
USP44-202ENST00000393091 KIF27Q86VH2 1401 aa22.56■■□□□ 1.2
USP44-202ENST00000393091 ADAMTS12P58397 1594 aa22.54■■□□□ 1.2
USP44-202ENST00000393091 TRIM41Q8WV44 630 aa22.52■■□□□ 1.2
USP44-202ENST00000393091 AQRO60306 1485 aaKnown RBP eCLIP22.5■■□□□ 1.19
USP44-202ENST00000393091 TDRD9Q8NDG6 1382 aaKnown RBP22.45■■□□□ 1.19
USP44-202ENST00000393091 CHD1O14646 1710 aa22.42■■□□□ 1.18
USP44-202ENST00000393091 IGF1RP08069 1367 aa22.42■■□□□ 1.18
USP44-202ENST00000393091 SYNJ2O15056 1496 aa22.41■■□□□ 1.18
USP44-202ENST00000393091 SNAPC4Q5SXM2 1469 aa22.41■■□□□ 1.18
USP44-202ENST00000393091 FHAD1B1AJZ9 1412 aa22.4■■□□□ 1.18
USP44-202ENST00000393091 KIF21BO75037 1637 aa22.39■■□□□ 1.17
USP44-202ENST00000393091 RUSC2Q8N2Y8 1516 aa22.38■■□□□ 1.17
USP44-202ENST00000393091 PRXQ9BXM0 1461 aa22.37■■□□□ 1.17
USP44-202ENST00000393091 GRIN2AQ12879 1464 aa22.3■■□□□ 1.16
USP44-202ENST00000393091 CLASP1Q7Z460 1538 aa22.27■■□□□ 1.16
USP44-202ENST00000393091 NUP160Q12769 1436 aa22.27■■□□□ 1.15
USP44-202ENST00000393091 RAPGEF2Q9Y4G8 1499 aa22.25■■□□□ 1.15
USP44-202ENST00000393091 CTTNBP2Q8WZ74 1663 aa22.24■■□□□ 1.15
USP44-202ENST00000393091 CARMIL1Q5VZK9 1371 aa22.23■■□□□ 1.15
USP44-202ENST00000393091 SHROOM2Q13796 1616 aa22.22■■□□□ 1.15
USP44-202ENST00000393091 CEP170Q5SW79 1584 aa22.22■■□□□ 1.15
USP44-202ENST00000393091 CSRNP3Q8WYN3 585 aa22.17■■□□□ 1.14
USP44-202ENST00000393091 KIAA0586Q9BVV6 1533 aa22.1■■□□□ 1.13
USP44-202ENST00000393091 GOLGA3Q08378 1498 aa22.07■■□□□ 1.12
USP44-202ENST00000393091 IQGAP2Q13576 1575 aa22.05■■□□□ 1.12
USP44-202ENST00000393091 UGGT2Q9NYU1 1516 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms