RNA–Protein interactions for RNA: ENST00000392481.6

RFC4-202, Transcript of replication factor C subunit 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene RFC4, Length 1,448 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-202ENST00000392481 NISCHQ9Y2I1 1504 aa28.93■■■□□ 2.22
RFC4-202ENST00000392481 CCDC180Q9P1Z9 1646 aa25.76■■□□□ 1.71
RFC4-202ENST00000392481 ABCC9O60706 1549 aa25.3■■□□□ 1.64
RFC4-202ENST00000392481 RB1CC1Q8TDY2 1594 aa24.31■■□□□ 1.48
RFC4-202ENST00000392481 NACADO15069 1562 aa24.26■■□□□ 1.47
RFC4-202ENST00000392481 DCAF8L2P0C7V8 631 aa24.21■■□□□ 1.47
RFC4-202ENST00000392481 MYO15BQ96JP2 1530 aa24.1■■□□□ 1.45
RFC4-202ENST00000392481 ZCCHC6Q5VYS8 1495 aaKnown RBP24.07■■□□□ 1.44
RFC4-202ENST00000392481 DCAF1Q9Y4B6 1507 aa23.95■■□□□ 1.42
RFC4-202ENST00000392481 UNC13AQ9UPW8 1703 aa23.73■■□□□ 1.39
RFC4-202ENST00000392481 PABPN1Q86U42 306 aaKnown RBP eCLIP23.63■■□□□ 1.37
RFC4-202ENST00000392481 BICRAQ9NZM4 1560 aa23.57■■□□□ 1.36
RFC4-202ENST00000392481 SCRIBQ14160 1630 aa23.48■■□□□ 1.35
RFC4-202ENST00000392481 SHROOM4Q9ULL8 1493 aa23.34■■□□□ 1.33
RFC4-202ENST00000392481 DNAJC5BQ9UF47 199 aa23.33■■□□□ 1.33
RFC4-202ENST00000392481 EIF4G1Q04637 1599 aaKnown RBP22.95■■□□□ 1.27
RFC4-202ENST00000392481 CC2D2AQ9P2K1 1620 aa22.89■■□□□ 1.25
RFC4-202ENST00000392481 CECR2Q9BXF3 1484 aa22.76■■□□□ 1.23
RFC4-202ENST00000392481 SMARCA4P51532 1647 aa22.46■■□□□ 1.19
RFC4-202ENST00000392481 BAZ1AQ9NRL2 1556 aaPredicted RBP22.42■■□□□ 1.18
RFC4-202ENST00000392481 NCAPD3P42695 1498 aa22.4■■□□□ 1.18
RFC4-202ENST00000392481 ATAD2BQ9ULI0 1458 aa22.38■■□□□ 1.17
RFC4-202ENST00000392481 SMARCA2P51531 1590 aa22.35■■□□□ 1.17
RFC4-202ENST00000392481 MROH2BQ7Z745 1585 aa22.28■■□□□ 1.16
RFC4-202ENST00000392481 HMGXB3Q12766 1538 aa22.26■■□□□ 1.15
RFC4-202ENST00000392481 PEG3Q9GZU2 1588 aa22.26■■□□□ 1.15
RFC4-202ENST00000392481 BAZ1BQ9UIG0 1483 aaKnown RBP22.18■■□□□ 1.14
RFC4-202ENST00000392481 WIZO95785 1651 aa22.02■■□□□ 1.12
RFC4-202ENST00000392481 RSF1Q96T23 1441 aaPredicted RBP22■■□□□ 1.11
RFC4-202ENST00000392481 NESP48681 1621 aa21.86■■□□□ 1.09
RFC4-202ENST00000392481 ERCC6Q03468 1493 aa21.83■■□□□ 1.08
RFC4-202ENST00000392481 LAMC3Q9Y6N6 1575 aa21.81■■□□□ 1.08
RFC4-202ENST00000392481 TOP2AP11388 1531 aaKnown RBP21.8■■□□□ 1.08
RFC4-202ENST00000392481 CADPSQ9ULU8 1353 aa21.74■■□□□ 1.07
RFC4-202ENST00000392481 PDS5BQ9NTI5 1447 aa21.69■■□□□ 1.06
RFC4-202ENST00000392481 CUX2O14529 1486 aa21.65■■□□□ 1.06
RFC4-202ENST00000392481 KIF21AQ7Z4S6 1674 aa21.59■■□□□ 1.05
RFC4-202ENST00000392481 CFTRP13569 1480 aa21.58■■□□□ 1.04
RFC4-202ENST00000392481 THOC2Q8NI27 1593 aaKnown RBP21.55■■□□□ 1.04
RFC4-202ENST00000392481 CCDC88BA6NC98 1476 aa21.55■■□□□ 1.04
RFC4-202ENST00000392481 FANCD2Q9BXW9 1451 aa21.47■■□□□ 1.03
RFC4-202ENST00000392481 CEP164Q9UPV0 1460 aa21.45■■□□□ 1.03
RFC4-202ENST00000392481 MRC2Q9UBG0 1479 aa21.45■■□□□ 1.02
RFC4-202ENST00000392481 PRDM2Q13029 1718 aa21.38■■□□□ 1.01
RFC4-202ENST00000392481 WDR62O43379 1518 aa21.38■■□□□ 1.01
RFC4-202ENST00000392481 SUPT5HO00267 1087 aaKnown RBP21.35■■□□□ 1.01
RFC4-202ENST00000392481 URB2Q14146 1524 aaKnown RBP21.26■□□□□ 0.99
RFC4-202ENST00000392481 ABCC8Q09428 1581 aa21.14■□□□□ 0.97
RFC4-202ENST00000392481 DNAJC5Q9H3Z4 198 aa21.13■□□□□ 0.97
RFC4-202ENST00000392481 TOPBP1Q92547 1522 aa21.12■□□□□ 0.97
RFC4-202ENST00000392481 DNMBPQ6XZF7 1577 aa21.08■□□□□ 0.97
RFC4-202ENST00000392481 IFT140Q96RY7 1462 aa21.01■□□□□ 0.95
RFC4-202ENST00000392481 POLA1P09884 1462 aaPredicted RBP20.93■□□□□ 0.94
RFC4-202ENST00000392481 CUX1P39880 1505 aa20.92■□□□□ 0.94
RFC4-202ENST00000392481 ZNF608Q9ULD9 1512 aaPredicted RBP20.92■□□□□ 0.94
RFC4-202ENST00000392481 TARBP1Q13395 1621 aaKnown RBP20.89■□□□□ 0.94
RFC4-202ENST00000392481 SOGA1O94964 1423 aa20.85■□□□□ 0.93
RFC4-202ENST00000392481 FGD5Q6ZNL6 1462 aa20.85■□□□□ 0.93
RFC4-202ENST00000392481 RAD54L2Q9Y4B4 1467 aa20.83■□□□□ 0.92
RFC4-202ENST00000392481 EIF4G3O43432 1585 aaKnown RBP20.82■□□□□ 0.92
RFC4-202ENST00000392481 AQRO60306 1485 aaKnown RBP eCLIP20.79■□□□□ 0.922e-7■■■■□ 23.4
RFC4-202ENST00000392481 OSCARQ8IYS5 282 aa20.75■□□□□ 0.91
RFC4-202ENST00000392481 WRNQ14191 1432 aaPredicted RBP eCLIP20.74■□□□□ 0.91
RFC4-202ENST00000392481 TDRD9Q8NDG6 1382 aaKnown RBP20.74■□□□□ 0.91
RFC4-202ENST00000392481 WDR97A6NE52 1622 aa20.73■□□□□ 0.91
RFC4-202ENST00000392481 TOP2BQ02880 1626 aa20.71■□□□□ 0.91
RFC4-202ENST00000392481 BIVM-ERCC5R4GMW8 1640 aa20.7■□□□□ 0.9
RFC4-202ENST00000392481 SYNJ1O43426 1573 aa20.68■□□□□ 0.9
RFC4-202ENST00000392481 ABCA10Q8WWZ4 1543 aa20.66■□□□□ 0.9
RFC4-202ENST00000392481 GRIN2BQ13224 1484 aa20.62■□□□□ 0.89
RFC4-202ENST00000392481 GAPVD1Q14C86 1478 aa20.61■□□□□ 0.89
RFC4-202ENST00000392481 SNAPC4Q5SXM2 1469 aa20.59■□□□□ 0.89
RFC4-202ENST00000392481 MAGI1Q96QZ7 1491 aaPredicted RBP20.58■□□□□ 0.89
RFC4-202ENST00000392481 ABCA5Q8WWZ7 1642 aa20.58■□□□□ 0.88
RFC4-202ENST00000392481 CHD1O14646 1710 aa20.57■□□□□ 0.88
RFC4-202ENST00000392481 FBLN2P98095 1184 aa20.57■□□□□ 0.88
RFC4-202ENST00000392481 PBRM1Q86U86 1689 aa20.54■□□□□ 0.88
RFC4-202ENST00000392481 CHMP7Q8WUX9 453 aaPredicted RBP20.51■□□□□ 0.87
RFC4-202ENST00000392481 SYNJ2O15056 1496 aa20.5■□□□□ 0.87
RFC4-202ENST00000392481 ERICH3Q5RHP9 1530 aa20.41■□□□□ 0.86
RFC4-202ENST00000392481 RIMBP3CA6NJZ7 1639 aa20.39■□□□□ 0.85
RFC4-202ENST00000392481 RIMBP3BA6NNM3 1639 aa20.39■□□□□ 0.85
RFC4-202ENST00000392481 RIMBP3Q9UFD9 1639 aa20.39■□□□□ 0.85
RFC4-202ENST00000392481 ARHGEF11O15085 1522 aa20.38■□□□□ 0.85
RFC4-202ENST00000392481 ADAMTS12P58397 1594 aa20.38■□□□□ 0.85
RFC4-202ENST00000392481 CLASP1Q7Z460 1538 aa20.37■□□□□ 0.85
RFC4-202ENST00000392481 FHAD1B1AJZ9 1412 aa20.37■□□□□ 0.85
RFC4-202ENST00000392481 TRIM41Q8WV44 630 aa20.36■□□□□ 0.85
RFC4-202ENST00000392481 GRIN2AQ12879 1464 aa20.35■□□□□ 0.85
RFC4-202ENST00000392481 KIF27Q86VH2 1401 aa20.33■□□□□ 0.85
RFC4-202ENST00000392481 NUP160Q12769 1436 aa20.27■□□□□ 0.84
RFC4-202ENST00000392481 IGF1RP08069 1367 aa20.27■□□□□ 0.84
RFC4-202ENST00000392481 CEP170Q5SW79 1584 aa20.24■□□□□ 0.83
RFC4-202ENST00000392481 CYB5RLQ6IPT4 315 aa20.22■□□□□ 0.83
RFC4-202ENST00000392481 ARAP1Q96P48 1450 aa20.21■□□□□ 0.83
RFC4-202ENST00000392481 CUL7Q14999 1698 aa20.19■□□□□ 0.82
RFC4-202ENST00000392481 CARMIL1Q5VZK9 1371 aa20.14■□□□□ 0.81
RFC4-202ENST00000392481 SHROOM2Q13796 1616 aa20.12■□□□□ 0.81
RFC4-202ENST00000392481 RUSC2Q8N2Y8 1516 aa20.09■□□□□ 0.81
RFC4-202ENST00000392481 JPH4Q96JJ6 628 aa20.08■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms