RNA–Protein interactions for RNA: ENST00000392128.6

SMARCAL1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SMARCAL1, Length 2,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-203ENST00000392128 NISCHQ9Y2I1 1504 aa25.81■■□□□ 1.72
SMARCAL1-203ENST00000392128 CCDC180Q9P1Z9 1646 aa22.51■■□□□ 1.19
SMARCAL1-203ENST00000392128 ZCCHC6Q5VYS8 1495 aaKnown RBP21.72■■□□□ 1.07
SMARCAL1-203ENST00000392128 DCAF1Q9Y4B6 1507 aa21.38■■□□□ 1.01
SMARCAL1-203ENST00000392128 DCAF8L2P0C7V8 631 aa21.18■□□□□ 0.98
SMARCAL1-203ENST00000392128 ABCC9O60706 1549 aa21.11■□□□□ 0.97
SMARCAL1-203ENST00000392128 MYO15BQ96JP2 1530 aa21.09■□□□□ 0.97
SMARCAL1-203ENST00000392128 SHROOM4Q9ULL8 1493 aa21.04■□□□□ 0.96
SMARCAL1-203ENST00000392128 NACADO15069 1562 aa20.92■□□□□ 0.94
SMARCAL1-203ENST00000392128 RB1CC1Q8TDY2 1594 aa20.7■□□□□ 0.9
SMARCAL1-203ENST00000392128 SCRIBQ14160 1630 aa20.66■□□□□ 0.9
SMARCAL1-203ENST00000392128 UNC13AQ9UPW8 1703 aa20.33■□□□□ 0.84
SMARCAL1-203ENST00000392128 SUPT5HO00267 1087 aaKnown RBP20.29■□□□□ 0.84
SMARCAL1-203ENST00000392128 BICRAQ9NZM4 1560 aa20.08■□□□□ 0.81
SMARCAL1-203ENST00000392128 RSF1Q96T23 1441 aaPredicted RBP20.05■□□□□ 0.8
SMARCAL1-203ENST00000392128 CECR2Q9BXF3 1484 aa20.02■□□□□ 0.8
SMARCAL1-203ENST00000392128 MROH2BQ7Z745 1585 aa19.93■□□□□ 0.78
SMARCAL1-203ENST00000392128 BAZ1AQ9NRL2 1556 aaPredicted RBP19.93■□□□□ 0.78
SMARCAL1-203ENST00000392128 PABPN1Q86U42 306 aaKnown RBP eCLIP19.9■□□□□ 0.78
SMARCAL1-203ENST00000392128 SMARCA4P51532 1647 aa19.83■□□□□ 0.77
SMARCAL1-203ENST00000392128 WIZO95785 1651 aa19.79■□□□□ 0.76
SMARCAL1-203ENST00000392128 PEG3Q9GZU2 1588 aa19.61■□□□□ 0.73
SMARCAL1-203ENST00000392128 TOP2AP11388 1531 aaKnown RBP19.59■□□□□ 0.73
SMARCAL1-203ENST00000392128 CHIC1Q5VXU3 224 aa19.51■□□□□ 0.71
SMARCAL1-203ENST00000392128 SMARCA2P51531 1590 aa19.47■□□□□ 0.71
SMARCAL1-203ENST00000392128 ATAD2BQ9ULI0 1458 aa19.46■□□□□ 0.71
SMARCAL1-203ENST00000392128 EIF4G1Q04637 1599 aaKnown RBP19.46■□□□□ 0.71
SMARCAL1-203ENST00000392128 CCDC88BA6NC98 1476 aa19.37■□□□□ 0.69
SMARCAL1-203ENST00000392128 BAZ1BQ9UIG0 1483 aaKnown RBP19.36■□□□□ 0.69
SMARCAL1-203ENST00000392128 HMGXB3Q12766 1538 aa19.29■□□□□ 0.68
SMARCAL1-203ENST00000392128 NCAPD3P42695 1498 aa19.28■□□□□ 0.68
SMARCAL1-203ENST00000392128 CC2D2AQ9P2K1 1620 aa19.15■□□□□ 0.66
SMARCAL1-203ENST00000392128 TRIM41Q8WV44 630 aa19.09■□□□□ 0.65
SMARCAL1-203ENST00000392128 ABCC8Q09428 1581 aa18.99■□□□□ 0.63
SMARCAL1-203ENST00000392128 CFTRP13569 1480 aa18.88■□□□□ 0.61
SMARCAL1-203ENST00000392128 PRDM2Q13029 1718 aa18.86■□□□□ 0.61
SMARCAL1-203ENST00000392128 WRNQ14191 1432 aaPredicted RBP eCLIP18.86■□□□□ 0.61
SMARCAL1-203ENST00000392128 SYNJ1O43426 1573 aa18.8■□□□□ 0.6
SMARCAL1-203ENST00000392128 CADPSQ9ULU8 1353 aa18.78■□□□□ 0.6
SMARCAL1-203ENST00000392128 LOC105371045A0A1W2PR82 267 aa18.73■□□□□ 0.59
SMARCAL1-203ENST00000392128 TOP2BQ02880 1626 aa18.73■□□□□ 0.59
SMARCAL1-203ENST00000392128 BIVM-ERCC5R4GMW8 1640 aa18.72■□□□□ 0.59
SMARCAL1-203ENST00000392128 FAM9AQ8IZU1 332 aaPredicted RBP18.71■□□□□ 0.59
SMARCAL1-203ENST00000392128 EEA1Q15075 1411 aa18.66■□□□□ 0.58
SMARCAL1-203ENST00000392128 SOGA1O94964 1423 aa18.64■□□□□ 0.58
SMARCAL1-203ENST00000392128 CUX1P39880 1505 aa18.64■□□□□ 0.57
SMARCAL1-203ENST00000392128 LAMC3Q9Y6N6 1575 aa18.63■□□□□ 0.57
SMARCAL1-203ENST00000392128 FANCD2Q9BXW9 1451 aa18.58■□□□□ 0.56
SMARCAL1-203ENST00000392128 NESP48681 1621 aa18.57■□□□□ 0.56
SMARCAL1-203ENST00000392128 RUSC2Q8N2Y8 1516 aa18.56■□□□□ 0.56
SMARCAL1-203ENST00000392128 DNAJC5BQ9UF47 199 aa18.56■□□□□ 0.56
SMARCAL1-203ENST00000392128 CSRNP3Q8WYN3 585 aa18.51■□□□□ 0.55
SMARCAL1-203ENST00000392128 DNMBPQ6XZF7 1577 aa18.46■□□□□ 0.54
SMARCAL1-203ENST00000392128 CEP164Q9UPV0 1460 aa18.45■□□□□ 0.54
SMARCAL1-203ENST00000392128 PDS5BQ9NTI5 1447 aa18.45■□□□□ 0.54
SMARCAL1-203ENST00000392128 KIF21BO75037 1637 aa18.44■□□□□ 0.54
SMARCAL1-203ENST00000392128 EHMT2Q96KQ7 1210 aa18.41■□□□□ 0.54
SMARCAL1-203ENST00000392128 FGD5Q6ZNL6 1462 aa18.41■□□□□ 0.54
SMARCAL1-203ENST00000392128 TOPBP1Q92547 1522 aa18.4■□□□□ 0.54
SMARCAL1-203ENST00000392128 KIF21AQ7Z4S6 1674 aa18.4■□□□□ 0.54
SMARCAL1-203ENST00000392128 GOLGA3Q08378 1498 aa18.4■□□□□ 0.54
SMARCAL1-203ENST00000392128 KIF27Q86VH2 1401 aa18.37■□□□□ 0.53
SMARCAL1-203ENST00000392128 TNIKQ9UKE5 1360 aa18.36■□□□□ 0.53
SMARCAL1-203ENST00000392128 URB2Q14146 1524 aaKnown RBP18.34■□□□□ 0.53
SMARCAL1-203ENST00000392128 POLA1P09884 1462 aaPredicted RBP18.31■□□□□ 0.52
SMARCAL1-203ENST00000392128 CUX2O14529 1486 aa18.3■□□□□ 0.52
SMARCAL1-203ENST00000392128 PRXQ9BXM0 1461 aa18.29■□□□□ 0.52
SMARCAL1-203ENST00000392128 ERICH3Q5RHP9 1530 aa18.29■□□□□ 0.52
SMARCAL1-203ENST00000392128 RAPGEF2Q9Y4G8 1499 aa18.27■□□□□ 0.52
SMARCAL1-203ENST00000392128 ABCA10Q8WWZ4 1543 aa18.27■□□□□ 0.52
SMARCAL1-203ENST00000392128 CEP162Q5TB80 1403 aa18.26■□□□□ 0.51
SMARCAL1-203ENST00000392128 UBTFP17480 764 aaKnown RBP18.25■□□□□ 0.51
SMARCAL1-203ENST00000392128 WDR97A6NE52 1622 aa18.24■□□□□ 0.51
SMARCAL1-203ENST00000392128 RAD54L2Q9Y4B4 1467 aa18.23■□□□□ 0.51
SMARCAL1-203ENST00000392128 MRC2Q9UBG0 1479 aa18.22■□□□□ 0.51
SMARCAL1-203ENST00000392128 IGF1RP08069 1367 aa18.19■□□□□ 0.5
SMARCAL1-203ENST00000392128 WDR62O43379 1518 aa18.14■□□□□ 0.49
SMARCAL1-203ENST00000392128 TARBP1Q13395 1621 aaKnown RBP18.13■□□□□ 0.49
SMARCAL1-203ENST00000392128 ABCA5Q8WWZ7 1642 aa18.13■□□□□ 0.49
SMARCAL1-203ENST00000392128 CARMIL1Q5VZK9 1371 aa18.1■□□□□ 0.49
SMARCAL1-203ENST00000392128 CUL7Q14999 1698 aa18.1■□□□□ 0.49
SMARCAL1-203ENST00000392128 ERCC6Q03468 1493 aa18.09■□□□□ 0.49
SMARCAL1-203ENST00000392128 CLIP1P30622 1438 aa18.09■□□□□ 0.49
SMARCAL1-203ENST00000392128 THOC2Q8NI27 1593 aaKnown RBP18.07■□□□□ 0.48
SMARCAL1-203ENST00000392128 GAPVD1Q14C86 1478 aa18.05■□□□□ 0.48
SMARCAL1-203ENST00000392128 TDRD9Q8NDG6 1382 aaKnown RBP18.03■□□□□ 0.48
SMARCAL1-203ENST00000392128 IFT140Q96RY7 1462 aa18.02■□□□□ 0.47
SMARCAL1-203ENST00000392128 TRIM26Q12899 539 aaPredicted RBP17.99■□□□□ 0.47
SMARCAL1-203ENST00000392128 PBRM1Q86U86 1689 aa17.99■□□□□ 0.47
SMARCAL1-203ENST00000392128 PCGF6Q9BYE7 350 aa17.98■□□□□ 0.47
SMARCAL1-203ENST00000392128 VPS8Q8N3P4 1428 aa17.96■□□□□ 0.47
SMARCAL1-203ENST00000392128 CTTNBP2Q8WZ74 1663 aa17.92■□□□□ 0.46
SMARCAL1-203ENST00000392128 ARAP1Q96P48 1450 aa17.92■□□□□ 0.46
SMARCAL1-203ENST00000392128 AQRO60306 1485 aaKnown RBP eCLIP17.91■□□□□ 0.46
SMARCAL1-203ENST00000392128 GRIN2BQ13224 1484 aa17.9■□□□□ 0.46
SMARCAL1-203ENST00000392128 ARHGAP35Q9NRY4 1499 aa17.89■□□□□ 0.45
SMARCAL1-203ENST00000392128 RANGAP1P46060 587 aaPredicted RBP17.89■□□□□ 0.45
SMARCAL1-203ENST00000392128 ZNF608Q9ULD9 1512 aaPredicted RBP17.89■□□□□ 0.45
SMARCAL1-203ENST00000392128 ADAMTS12P58397 1594 aa17.88■□□□□ 0.45
SMARCAL1-203ENST00000392128 EIF4G3O43432 1585 aaKnown RBP17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms