RNA–Protein interactions for RNA: ENST00000390612.3

IGHV4-28-201, Transcript of immunoglobulin heavy variable 4-28, humanhuman

APPRIS P1 BASIC

Gene IGHV4-28, Length 425 nt, Biotype IG V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IGHV4-28-201ENST00000390612 NISCHQ9Y2I1 1504 aa28.12■■■□□ 2.09
IGHV4-28-201ENST00000390612 CCDC180Q9P1Z9 1646 aa25.08■■□□□ 1.6
IGHV4-28-201ENST00000390612 ABCC9O60706 1549 aa24.59■■□□□ 1.53
IGHV4-28-201ENST00000390612 RB1CC1Q8TDY2 1594 aa23.62■■□□□ 1.37
IGHV4-28-201ENST00000390612 NACADO15069 1562 aa23.59■■□□□ 1.37
IGHV4-28-201ENST00000390612 MYO15BQ96JP2 1530 aa23.45■■□□□ 1.34
IGHV4-28-201ENST00000390612 DCAF8L2P0C7V8 631 aa23.4■■□□□ 1.34
IGHV4-28-201ENST00000390612 ZCCHC6Q5VYS8 1495 aaKnown RBP23.38■■□□□ 1.33
IGHV4-28-201ENST00000390612 DCAF1Q9Y4B6 1507 aa23.29■■□□□ 1.32
IGHV4-28-201ENST00000390612 UNC13AQ9UPW8 1703 aa23.19■■□□□ 1.3
IGHV4-28-201ENST00000390612 BICRAQ9NZM4 1560 aa22.98■■□□□ 1.27
IGHV4-28-201ENST00000390612 PABPN1Q86U42 306 aaKnown RBP eCLIP22.94■■□□□ 1.26
IGHV4-28-201ENST00000390612 SCRIBQ14160 1630 aa22.79■■□□□ 1.24
IGHV4-28-201ENST00000390612 DNAJC5BQ9UF47 199 aa22.78■■□□□ 1.24
IGHV4-28-201ENST00000390612 SHROOM4Q9ULL8 1493 aa22.7■■□□□ 1.22
IGHV4-28-201ENST00000390612 EIF4G1Q04637 1599 aaKnown RBP22.33■■□□□ 1.17
IGHV4-28-201ENST00000390612 CC2D2AQ9P2K1 1620 aa22.28■■□□□ 1.16
IGHV4-28-201ENST00000390612 CECR2Q9BXF3 1484 aa22.12■■□□□ 1.13
IGHV4-28-201ENST00000390612 SMARCA4P51532 1647 aa21.84■■□□□ 1.09
IGHV4-28-201ENST00000390612 NCAPD3P42695 1498 aa21.78■■□□□ 1.08
IGHV4-28-201ENST00000390612 BAZ1AQ9NRL2 1556 aaPredicted RBP21.78■■□□□ 1.08
IGHV4-28-201ENST00000390612 ATAD2BQ9ULI0 1458 aa21.76■■□□□ 1.07
IGHV4-28-201ENST00000390612 SMARCA2P51531 1590 aa21.7■■□□□ 1.06
IGHV4-28-201ENST00000390612 PEG3Q9GZU2 1588 aa21.67■■□□□ 1.06
IGHV4-28-201ENST00000390612 MROH2BQ7Z745 1585 aa21.65■■□□□ 1.06
IGHV4-28-201ENST00000390612 HMGXB3Q12766 1538 aa21.65■■□□□ 1.06
IGHV4-28-201ENST00000390612 BAZ1BQ9UIG0 1483 aaKnown RBP21.52■■□□□ 1.03
IGHV4-28-201ENST00000390612 WIZO95785 1651 aa21.41■■□□□ 1.02
IGHV4-28-201ENST00000390612 RSF1Q96T23 1441 aaPredicted RBP21.36■■□□□ 1.01
IGHV4-28-201ENST00000390612 NESP48681 1621 aa21.26■□□□□ 0.99
IGHV4-28-201ENST00000390612 LAMC3Q9Y6N6 1575 aa21.22■□□□□ 0.99
IGHV4-28-201ENST00000390612 TOP2AP11388 1531 aaKnown RBP21.16■□□□□ 0.98
IGHV4-28-201ENST00000390612 ERCC6Q03468 1493 aa21.15■□□□□ 0.98
IGHV4-28-201ENST00000390612 CADPSQ9ULU8 1353 aa21.11■□□□□ 0.97
IGHV4-28-201ENST00000390612 CUX2O14529 1486 aa21.07■□□□□ 0.96
IGHV4-28-201ENST00000390612 PDS5BQ9NTI5 1447 aa21.04■□□□□ 0.96
IGHV4-28-201ENST00000390612 KIF21AQ7Z4S6 1674 aa21.04■□□□□ 0.96
IGHV4-28-201ENST00000390612 THOC2Q8NI27 1593 aaKnown RBP21■□□□□ 0.95
IGHV4-28-201ENST00000390612 CFTRP13569 1480 aa20.97■□□□□ 0.95
IGHV4-28-201ENST00000390612 CCDC88BA6NC98 1476 aa20.93■□□□□ 0.94
IGHV4-28-201ENST00000390612 PRDM2Q13029 1718 aa20.85■□□□□ 0.93
IGHV4-28-201ENST00000390612 FANCD2Q9BXW9 1451 aa20.85■□□□□ 0.93
IGHV4-28-201ENST00000390612 MRC2Q9UBG0 1479 aa20.83■□□□□ 0.93
IGHV4-28-201ENST00000390612 CEP164Q9UPV0 1460 aa20.82■□□□□ 0.92
IGHV4-28-201ENST00000390612 WDR62O43379 1518 aa20.8■□□□□ 0.92
IGHV4-28-201ENST00000390612 URB2Q14146 1524 aaKnown RBP20.68■□□□□ 0.9
IGHV4-28-201ENST00000390612 DNAJC5Q9H3Z4 198 aa20.61■□□□□ 0.89
IGHV4-28-201ENST00000390612 SUPT5HO00267 1087 aaKnown RBP20.59■□□□□ 0.89
IGHV4-28-201ENST00000390612 TOPBP1Q92547 1522 aa20.52■□□□□ 0.87
IGHV4-28-201ENST00000390612 ABCC8Q09428 1581 aa20.51■□□□□ 0.87
IGHV4-28-201ENST00000390612 DNMBPQ6XZF7 1577 aa20.48■□□□□ 0.87
IGHV4-28-201ENST00000390612 IFT140Q96RY7 1462 aa20.41■□□□□ 0.86
IGHV4-28-201ENST00000390612 TARBP1Q13395 1621 aaKnown RBP20.35■□□□□ 0.85
IGHV4-28-201ENST00000390612 ZNF608Q9ULD9 1512 aaPredicted RBP20.34■□□□□ 0.85
IGHV4-28-201ENST00000390612 POLA1P09884 1462 aaPredicted RBP20.33■□□□□ 0.85
IGHV4-28-201ENST00000390612 CUX1P39880 1505 aa20.32■□□□□ 0.84
IGHV4-28-201ENST00000390612 EIF4G3O43432 1585 aaKnown RBP20.25■□□□□ 0.83
IGHV4-28-201ENST00000390612 FGD5Q6ZNL6 1462 aa20.24■□□□□ 0.83
IGHV4-28-201ENST00000390612 SOGA1O94964 1423 aa20.23■□□□□ 0.83
IGHV4-28-201ENST00000390612 RAD54L2Q9Y4B4 1467 aa20.23■□□□□ 0.83
IGHV4-28-201ENST00000390612 AQRO60306 1485 aaKnown RBP eCLIP20.19■□□□□ 0.82
IGHV4-28-201ENST00000390612 WDR97A6NE52 1622 aa20.16■□□□□ 0.82
IGHV4-28-201ENST00000390612 OSCARQ8IYS5 282 aa20.14■□□□□ 0.81
IGHV4-28-201ENST00000390612 BIVM-ERCC5R4GMW8 1640 aa20.13■□□□□ 0.81
IGHV4-28-201ENST00000390612 TDRD9Q8NDG6 1382 aaKnown RBP20.12■□□□□ 0.81
IGHV4-28-201ENST00000390612 TOP2BQ02880 1626 aa20.12■□□□□ 0.81
IGHV4-28-201ENST00000390612 WRNQ14191 1432 aaPredicted RBP eCLIP20.1■□□□□ 0.81
IGHV4-28-201ENST00000390612 SYNJ1O43426 1573 aa20.09■□□□□ 0.81
IGHV4-28-201ENST00000390612 ABCA10Q8WWZ4 1543 aa20.07■□□□□ 0.8
IGHV4-28-201ENST00000390612 CHD1O14646 1710 aa20.05■□□□□ 0.8
IGHV4-28-201ENST00000390612 GRIN2BQ13224 1484 aa20.01■□□□□ 0.79
IGHV4-28-201ENST00000390612 ABCA5Q8WWZ7 1642 aa20.01■□□□□ 0.79
IGHV4-28-201ENST00000390612 GAPVD1Q14C86 1478 aa19.99■□□□□ 0.79
IGHV4-28-201ENST00000390612 PBRM1Q86U86 1689 aa19.99■□□□□ 0.79
IGHV4-28-201ENST00000390612 SNAPC4Q5SXM2 1469 aa19.99■□□□□ 0.79
IGHV4-28-201ENST00000390612 MAGI1Q96QZ7 1491 aaPredicted RBP19.99■□□□□ 0.79
IGHV4-28-201ENST00000390612 SYNJ2O15056 1496 aa19.9■□□□□ 0.78
IGHV4-28-201ENST00000390612 FBLN2P98095 1184 aa19.89■□□□□ 0.77
IGHV4-28-201ENST00000390612 RIMBP3CA6NJZ7 1639 aa19.87■□□□□ 0.77
IGHV4-28-201ENST00000390612 RIMBP3BA6NNM3 1639 aa19.87■□□□□ 0.77
IGHV4-28-201ENST00000390612 RIMBP3Q9UFD9 1639 aa19.87■□□□□ 0.77
IGHV4-28-201ENST00000390612 CHMP7Q8WUX9 453 aaPredicted RBP19.86■□□□□ 0.77
IGHV4-28-201ENST00000390612 CLASP1Q7Z460 1538 aa19.84■□□□□ 0.77
IGHV4-28-201ENST00000390612 ARHGEF11O15085 1522 aa19.83■□□□□ 0.77
IGHV4-28-201ENST00000390612 ERICH3Q5RHP9 1530 aa19.82■□□□□ 0.76
IGHV4-28-201ENST00000390612 ADAMTS12P58397 1594 aa19.81■□□□□ 0.76
IGHV4-28-201ENST00000390612 FHAD1B1AJZ9 1412 aa19.76■□□□□ 0.75
IGHV4-28-201ENST00000390612 GRIN2AQ12879 1464 aa19.75■□□□□ 0.75
IGHV4-28-201ENST00000390612 TRIM41Q8WV44 630 aa19.75■□□□□ 0.75
IGHV4-28-201ENST00000390612 NUP160Q12769 1436 aa19.71■□□□□ 0.75
IGHV4-28-201ENST00000390612 KIF27Q86VH2 1401 aa19.68■□□□□ 0.74
IGHV4-28-201ENST00000390612 CEP170Q5SW79 1584 aa19.68■□□□□ 0.74
IGHV4-28-201ENST00000390612 IGF1RP08069 1367 aa19.68■□□□□ 0.74
IGHV4-28-201ENST00000390612 ARAP1Q96P48 1450 aa19.67■□□□□ 0.74
IGHV4-28-201ENST00000390612 CYB5RLQ6IPT4 315 aa19.62■□□□□ 0.73
IGHV4-28-201ENST00000390612 CUL7Q14999 1698 aa19.61■□□□□ 0.73
IGHV4-28-201ENST00000390612 SHROOM2Q13796 1616 aa19.6■□□□□ 0.73
IGHV4-28-201ENST00000390612 ERCC6L2Q5T890 1561 aa19.54■□□□□ 0.72
IGHV4-28-201ENST00000390612 RUSC2Q8N2Y8 1516 aa19.52■□□□□ 0.72
IGHV4-28-201ENST00000390612 CARMIL1Q5VZK9 1371 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms