RNA–Protein interactions for RNA: ENST00000390446.3

TRAV18-201, Transcript of T cell receptor alpha variable 18, humanhuman

APPRIS P1 BASIC

Gene TRAV18, Length 440 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV18-201ENST00000390446 NISCHQ9Y2I1 1504 aa24.61■■□□□ 1.53
TRAV18-201ENST00000390446 ABCC9O60706 1549 aa22.86■■□□□ 1.25
TRAV18-201ENST00000390446 CCDC180Q9P1Z9 1646 aa22.22■■□□□ 1.15
TRAV18-201ENST00000390446 DNAJC5BQ9UF47 199 aa21.81■■□□□ 1.08
TRAV18-201ENST00000390446 RB1CC1Q8TDY2 1594 aa21.48■■□□□ 1.03
TRAV18-201ENST00000390446 DCAF8L2P0C7V8 631 aa21.34■■□□□ 1.01
TRAV18-201ENST00000390446 PABPN1Q86U42 306 aaKnown RBP eCLIP21.28■■□□□ 1
TRAV18-201ENST00000390446 NACADO15069 1562 aa21.18■□□□□ 0.98
TRAV18-201ENST00000390446 UNC13AQ9UPW8 1703 aa20.86■□□□□ 0.93
TRAV18-201ENST00000390446 BICRAQ9NZM4 1560 aa20.76■□□□□ 0.91
TRAV18-201ENST00000390446 MYO15BQ96JP2 1530 aa20.64■□□□□ 0.9
TRAV18-201ENST00000390446 CECR2Q9BXF3 1484 aa20.62■□□□□ 0.89
TRAV18-201ENST00000390446 CC2D2AQ9P2K1 1620 aa20.53■□□□□ 0.88
TRAV18-201ENST00000390446 SHROOM4Q9ULL8 1493 aa20.43■□□□□ 0.86
TRAV18-201ENST00000390446 DNAJC5Q9H3Z4 198 aa20.42■□□□□ 0.86
TRAV18-201ENST00000390446 EIF4G1Q04637 1599 aaKnown RBP20.36■□□□□ 0.85
TRAV18-201ENST00000390446 SCRIBQ14160 1630 aa20.34■□□□□ 0.85
TRAV18-201ENST00000390446 ZCCHC6Q5VYS8 1495 aaKnown RBP20.24■□□□□ 0.83
TRAV18-201ENST00000390446 DCAF1Q9Y4B6 1507 aa20.22■□□□□ 0.83
TRAV18-201ENST00000390446 ERCC6Q03468 1493 aa19.83■□□□□ 0.76
TRAV18-201ENST00000390446 CUX2O14529 1486 aa19.81■□□□□ 0.76
TRAV18-201ENST00000390446 NCAPD3P42695 1498 aa19.55■□□□□ 0.72
TRAV18-201ENST00000390446 TRIM41Q8WV44 630 aa19.5■□□□□ 0.71
TRAV18-201ENST00000390446 NESP48681 1621 aa19.44■□□□□ 0.7
TRAV18-201ENST00000390446 ATAD2BQ9ULI0 1458 aa19.44■□□□□ 0.7
TRAV18-201ENST00000390446 SMARCA2P51531 1590 aa19.38■□□□□ 0.69
TRAV18-201ENST00000390446 HMGXB3Q12766 1538 aa19.33■□□□□ 0.68
TRAV18-201ENST00000390446 BAZ1BQ9UIG0 1483 aaKnown RBP19.3■□□□□ 0.68
TRAV18-201ENST00000390446 SMARCA4P51532 1647 aa19.28■□□□□ 0.68
TRAV18-201ENST00000390446 THOC2Q8NI27 1593 aaKnown RBP19.24■□□□□ 0.67
TRAV18-201ENST00000390446 PDS5BQ9NTI5 1447 aa19.2■□□□□ 0.66
TRAV18-201ENST00000390446 LAMC3Q9Y6N6 1575 aa19.19■□□□□ 0.66
TRAV18-201ENST00000390446 BAZ1AQ9NRL2 1556 aaPredicted RBP19.15■□□□□ 0.66
TRAV18-201ENST00000390446 KIF21AQ7Z4S6 1674 aa19.13■□□□□ 0.65
TRAV18-201ENST00000390446 PEG3Q9GZU2 1588 aa19.02■□□□□ 0.63
TRAV18-201ENST00000390446 MRC2Q9UBG0 1479 aa19.01■□□□□ 0.63
TRAV18-201ENST00000390446 OSCARQ8IYS5 282 aa19■□□□□ 0.63
TRAV18-201ENST00000390446 CADPSQ9ULU8 1353 aa19■□□□□ 0.63
TRAV18-201ENST00000390446 MROH2BQ7Z745 1585 aa18.96■□□□□ 0.63
TRAV18-201ENST00000390446 WDR62O43379 1518 aa18.9■□□□□ 0.62
TRAV18-201ENST00000390446 CEP164Q9UPV0 1460 aa18.86■□□□□ 0.61
TRAV18-201ENST00000390446 FANCD2Q9BXW9 1451 aa18.79■□□□□ 0.6
TRAV18-201ENST00000390446 WIZO95785 1651 aa18.73■□□□□ 0.59
TRAV18-201ENST00000390446 TRHP20396 242 aaPredicted RBP18.66■□□□□ 0.58
TRAV18-201ENST00000390446 RIMBP3CA6NJZ7 1639 aa18.63■□□□□ 0.57
TRAV18-201ENST00000390446 RIMBP3BA6NNM3 1639 aa18.63■□□□□ 0.57
TRAV18-201ENST00000390446 RIMBP3Q9UFD9 1639 aa18.63■□□□□ 0.57
TRAV18-201ENST00000390446 CFTRP13569 1480 aa18.63■□□□□ 0.57
TRAV18-201ENST00000390446 CYB5RLQ6IPT4 315 aa18.62■□□□□ 0.57
TRAV18-201ENST00000390446 URB2Q14146 1524 aaKnown RBP18.61■□□□□ 0.57
TRAV18-201ENST00000390446 ARHGEF11O15085 1522 aa18.54■□□□□ 0.56
TRAV18-201ENST00000390446 AEBP2Q6ZN18 517 aaPredicted RBP18.5■□□□□ 0.55
TRAV18-201ENST00000390446 FBLN2P98095 1184 aa18.49■□□□□ 0.55
TRAV18-201ENST00000390446 IFT140Q96RY7 1462 aa18.49■□□□□ 0.55
TRAV18-201ENST00000390446 ZNF608Q9ULD9 1512 aaPredicted RBP18.49■□□□□ 0.55
TRAV18-201ENST00000390446 TOP2AP11388 1531 aaKnown RBP18.44■□□□□ 0.54
TRAV18-201ENST00000390446 RSF1Q96T23 1441 aaPredicted RBP18.41■□□□□ 0.54
TRAV18-201ENST00000390446 TOPBP1Q92547 1522 aa18.35■□□□□ 0.53
TRAV18-201ENST00000390446 EIF4G3O43432 1585 aaKnown RBP18.33■□□□□ 0.52
TRAV18-201ENST00000390446 PRDM2Q13029 1718 aa18.32■□□□□ 0.52
TRAV18-201ENST00000390446 ABCC8Q09428 1581 aa18.32■□□□□ 0.52
TRAV18-201ENST00000390446 AQRO60306 1485 aaKnown RBP eCLIP18.32■□□□□ 0.52
TRAV18-201ENST00000390446 ARAP1Q96P48 1450 aa18.31■□□□□ 0.52
TRAV18-201ENST00000390446 CCDC88BA6NC98 1476 aa18.28■□□□□ 0.52
TRAV18-201ENST00000390446 CHD1O14646 1710 aa18.28■□□□□ 0.52
TRAV18-201ENST00000390446 DNMBPQ6XZF7 1577 aa18.22■□□□□ 0.51
TRAV18-201ENST00000390446 CHMP7Q8WUX9 453 aaPredicted RBP18.21■□□□□ 0.51
TRAV18-201ENST00000390446 TDRD9Q8NDG6 1382 aaKnown RBP18.17■□□□□ 0.5
TRAV18-201ENST00000390446 TARBP1Q13395 1621 aaKnown RBP18.15■□□□□ 0.5
TRAV18-201ENST00000390446 SOGA1O94964 1423 aa18.13■□□□□ 0.49
TRAV18-201ENST00000390446 POLA1P09884 1462 aaPredicted RBP18.12■□□□□ 0.49
TRAV18-201ENST00000390446 RAD54L2Q9Y4B4 1467 aa18.12■□□□□ 0.49
TRAV18-201ENST00000390446 SNAPC4Q5SXM2 1469 aa18.08■□□□□ 0.49
TRAV18-201ENST00000390446 SYNJ1O43426 1573 aa18.07■□□□□ 0.48
TRAV18-201ENST00000390446 CLASP1Q7Z460 1538 aa18.02■□□□□ 0.47
TRAV18-201ENST00000390446 MAGI1Q96QZ7 1491 aaPredicted RBP17.99■□□□□ 0.47
TRAV18-201ENST00000390446 GRIN2BQ13224 1484 aa17.98■□□□□ 0.47
TRAV18-201ENST00000390446 GAPVD1Q14C86 1478 aa17.98■□□□□ 0.47
TRAV18-201ENST00000390446 FGD5Q6ZNL6 1462 aa17.97■□□□□ 0.47
TRAV18-201ENST00000390446 SYNJ2O15056 1496 aa17.95■□□□□ 0.46
TRAV18-201ENST00000390446 WDR97A6NE52 1622 aa17.93■□□□□ 0.46
TRAV18-201ENST00000390446 CUX1P39880 1505 aa17.83■□□□□ 0.45
TRAV18-201ENST00000390446 PBRM1Q86U86 1689 aa17.8■□□□□ 0.44
TRAV18-201ENST00000390446 ERCC6L2Q5T890 1561 aa17.74■□□□□ 0.43
TRAV18-201ENST00000390446 NPM1P06748 294 aaKnown RBP eCLIP17.74■□□□□ 0.43
TRAV18-201ENST00000390446 GRIN2AQ12879 1464 aa17.72■□□□□ 0.43
TRAV18-201ENST00000390446 FAM69CQ0P6D2 419 aa17.7■□□□□ 0.42
TRAV18-201ENST00000390446 ABCA10Q8WWZ4 1543 aa17.7■□□□□ 0.42
TRAV18-201ENST00000390446 CEP170Q5SW79 1584 aa17.7■□□□□ 0.42
TRAV18-201ENST00000390446 ABCA5Q8WWZ7 1642 aa17.66■□□□□ 0.42
TRAV18-201ENST00000390446 WRNQ14191 1432 aaPredicted RBP eCLIP17.64■□□□□ 0.41
TRAV18-201ENST00000390446 NUP160Q12769 1436 aa17.63■□□□□ 0.41
TRAV18-201ENST00000390446 PRG4Q92954 1404 aaPredicted RBP17.63■□□□□ 0.41
TRAV18-201ENST00000390446 FHAD1B1AJZ9 1412 aa17.61■□□□□ 0.41
TRAV18-201ENST00000390446 JPH4Q96JJ6 628 aa17.6■□□□□ 0.41
TRAV18-201ENST00000390446 KIF13AQ9H1H9 1805 aa17.6■□□□□ 0.41
TRAV18-201ENST00000390446 ADAMTS12P58397 1594 aa17.59■□□□□ 0.41
TRAV18-201ENST00000390446 ILDR1Q86SU0 546 aaPredicted RBP17.58■□□□□ 0.4
TRAV18-201ENST00000390446 SHROOM2Q13796 1616 aa17.55■□□□□ 0.4
TRAV18-201ENST00000390446 KDM4FA0A1W2PPD8 638 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms