RNA–Protein interactions for RNA: ENST00000390425.2

TRAV3-201, Transcript of T cell receptor alpha variable 3 (gene/pseudogene), humanhuman

APPRIS P1 BASIC

Gene TRAV3, Length 519 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3-201ENST00000390425 NISCHQ9Y2I1 1504 aa27.92■■■□□ 2.06
TRAV3-201ENST00000390425 CCDC180Q9P1Z9 1646 aa25.12■■□□□ 1.61
TRAV3-201ENST00000390425 ABCC9O60706 1549 aa24.98■■□□□ 1.59
TRAV3-201ENST00000390425 RB1CC1Q8TDY2 1594 aa23.81■■□□□ 1.4
TRAV3-201ENST00000390425 NACADO15069 1562 aa23.66■■□□□ 1.38
TRAV3-201ENST00000390425 UNC13AQ9UPW8 1703 aa23.44■■□□□ 1.34
TRAV3-201ENST00000390425 DNAJC5BQ9UF47 199 aa23.38■■□□□ 1.33
TRAV3-201ENST00000390425 DCAF8L2P0C7V8 631 aa23.36■■□□□ 1.33
TRAV3-201ENST00000390425 MYO15BQ96JP2 1530 aa23.36■■□□□ 1.33
TRAV3-201ENST00000390425 BICRAQ9NZM4 1560 aa23.2■■□□□ 1.3
TRAV3-201ENST00000390425 ZCCHC6Q5VYS8 1495 aaKnown RBP23.19■■□□□ 1.3
TRAV3-201ENST00000390425 PABPN1Q86U42 306 aaKnown RBP eCLIP23.19■■□□□ 1.3
TRAV3-201ENST00000390425 DCAF1Q9Y4B6 1507 aa23.08■■□□□ 1.29
TRAV3-201ENST00000390425 SCRIBQ14160 1630 aa22.85■■□□□ 1.25
TRAV3-201ENST00000390425 SHROOM4Q9ULL8 1493 aa22.81■■□□□ 1.24
TRAV3-201ENST00000390425 CC2D2AQ9P2K1 1620 aa22.62■■□□□ 1.21
TRAV3-201ENST00000390425 EIF4G1Q04637 1599 aaKnown RBP22.58■■□□□ 1.2
TRAV3-201ENST00000390425 CECR2Q9BXF3 1484 aa22.49■■□□□ 1.19
TRAV3-201ENST00000390425 SMARCA4P51532 1647 aa21.82■■□□□ 1.08
TRAV3-201ENST00000390425 NCAPD3P42695 1498 aa21.82■■□□□ 1.08
TRAV3-201ENST00000390425 ATAD2BQ9ULI0 1458 aa21.77■■□□□ 1.08
TRAV3-201ENST00000390425 SMARCA2P51531 1590 aa21.72■■□□□ 1.07
TRAV3-201ENST00000390425 HMGXB3Q12766 1538 aa21.71■■□□□ 1.07
TRAV3-201ENST00000390425 BAZ1AQ9NRL2 1556 aaPredicted RBP21.66■■□□□ 1.06
TRAV3-201ENST00000390425 PEG3Q9GZU2 1588 aa21.61■■□□□ 1.05
TRAV3-201ENST00000390425 BAZ1BQ9UIG0 1483 aaKnown RBP21.55■■□□□ 1.04
TRAV3-201ENST00000390425 MROH2BQ7Z745 1585 aa21.54■■□□□ 1.04
TRAV3-201ENST00000390425 ERCC6Q03468 1493 aa21.52■■□□□ 1.03
TRAV3-201ENST00000390425 CUX2O14529 1486 aa21.51■■□□□ 1.03
TRAV3-201ENST00000390425 NESP48681 1621 aa21.5■■□□□ 1.03
TRAV3-201ENST00000390425 DNAJC5Q9H3Z4 198 aa21.38■■□□□ 1.01
TRAV3-201ENST00000390425 LAMC3Q9Y6N6 1575 aa21.36■■□□□ 1.01
TRAV3-201ENST00000390425 THOC2Q8NI27 1593 aaKnown RBP21.35■■□□□ 1.01
TRAV3-201ENST00000390425 WIZO95785 1651 aa21.31■■□□□ 1
TRAV3-201ENST00000390425 KIF21AQ7Z4S6 1674 aa21.31■■□□□ 1
TRAV3-201ENST00000390425 PDS5BQ9NTI5 1447 aa21.14■□□□□ 0.98
TRAV3-201ENST00000390425 CADPSQ9ULU8 1353 aa21.12■□□□□ 0.97
TRAV3-201ENST00000390425 RSF1Q96T23 1441 aaPredicted RBP21.06■□□□□ 0.96
TRAV3-201ENST00000390425 MRC2Q9UBG0 1479 aa21.02■□□□□ 0.96
TRAV3-201ENST00000390425 WDR62O43379 1518 aa21.02■□□□□ 0.96
TRAV3-201ENST00000390425 TOP2AP11388 1531 aaKnown RBP21.02■□□□□ 0.96
TRAV3-201ENST00000390425 CEP164Q9UPV0 1460 aa20.94■□□□□ 0.94
TRAV3-201ENST00000390425 CFTRP13569 1480 aa20.94■□□□□ 0.94
TRAV3-201ENST00000390425 FANCD2Q9BXW9 1451 aa20.92■□□□□ 0.94
TRAV3-201ENST00000390425 PRDM2Q13029 1718 aa20.88■□□□□ 0.93
TRAV3-201ENST00000390425 URB2Q14146 1524 aaKnown RBP20.78■□□□□ 0.92
TRAV3-201ENST00000390425 CCDC88BA6NC98 1476 aa20.74■□□□□ 0.91
TRAV3-201ENST00000390425 TOPBP1Q92547 1522 aa20.56■□□□□ 0.88
TRAV3-201ENST00000390425 ZNF608Q9ULD9 1512 aaPredicted RBP20.51■□□□□ 0.87
TRAV3-201ENST00000390425 IFT140Q96RY7 1462 aa20.5■□□□□ 0.87
TRAV3-201ENST00000390425 DNMBPQ6XZF7 1577 aa20.5■□□□□ 0.87
TRAV3-201ENST00000390425 EIF4G3O43432 1585 aaKnown RBP20.46■□□□□ 0.87
TRAV3-201ENST00000390425 ABCC8Q09428 1581 aa20.45■□□□□ 0.86
TRAV3-201ENST00000390425 TRIM41Q8WV44 630 aa20.43■□□□□ 0.86
TRAV3-201ENST00000390425 TARBP1Q13395 1621 aaKnown RBP20.42■□□□□ 0.86
TRAV3-201ENST00000390425 OSCARQ8IYS5 282 aa20.41■□□□□ 0.86
TRAV3-201ENST00000390425 POLA1P09884 1462 aaPredicted RBP20.35■□□□□ 0.85
TRAV3-201ENST00000390425 CHD1O14646 1710 aa20.33■□□□□ 0.84
TRAV3-201ENST00000390425 RIMBP3CA6NJZ7 1639 aa20.32■□□□□ 0.84
TRAV3-201ENST00000390425 RIMBP3BA6NNM3 1639 aa20.32■□□□□ 0.84
TRAV3-201ENST00000390425 RIMBP3Q9UFD9 1639 aa20.32■□□□□ 0.84
TRAV3-201ENST00000390425 AQRO60306 1485 aaKnown RBP eCLIP20.29■□□□□ 0.84
TRAV3-201ENST00000390425 RAD54L2Q9Y4B4 1467 aa20.26■□□□□ 0.83
TRAV3-201ENST00000390425 CUX1P39880 1505 aa20.24■□□□□ 0.83
TRAV3-201ENST00000390425 ARHGEF11O15085 1522 aa20.23■□□□□ 0.83
TRAV3-201ENST00000390425 FGD5Q6ZNL6 1462 aa20.23■□□□□ 0.83
TRAV3-201ENST00000390425 WDR97A6NE52 1622 aa20.2■□□□□ 0.82
TRAV3-201ENST00000390425 SOGA1O94964 1423 aa20.19■□□□□ 0.82
TRAV3-201ENST00000390425 TDRD9Q8NDG6 1382 aaKnown RBP20.14■□□□□ 0.81
TRAV3-201ENST00000390425 SNAPC4Q5SXM2 1469 aa20.11■□□□□ 0.81
TRAV3-201ENST00000390425 PBRM1Q86U86 1689 aa20.08■□□□□ 0.81
TRAV3-201ENST00000390425 MAGI1Q96QZ7 1491 aaPredicted RBP20.05■□□□□ 0.8
TRAV3-201ENST00000390425 SUPT5HO00267 1087 aaKnown RBP20.05■□□□□ 0.8
TRAV3-201ENST00000390425 CLASP1Q7Z460 1538 aa20.05■□□□□ 0.8
TRAV3-201ENST00000390425 ARAP1Q96P48 1450 aa20.05■□□□□ 0.8
TRAV3-201ENST00000390425 FBLN2P98095 1184 aa20.04■□□□□ 0.8
TRAV3-201ENST00000390425 GRIN2BQ13224 1484 aa20.04■□□□□ 0.8
TRAV3-201ENST00000390425 ABCA5Q8WWZ7 1642 aa20.03■□□□□ 0.8
TRAV3-201ENST00000390425 ABCA10Q8WWZ4 1543 aa19.99■□□□□ 0.79
TRAV3-201ENST00000390425 SYNJ1O43426 1573 aa19.99■□□□□ 0.79
TRAV3-201ENST00000390425 SYNJ2O15056 1496 aa19.98■□□□□ 0.79
TRAV3-201ENST00000390425 BIVM-ERCC5R4GMW8 1640 aa19.97■□□□□ 0.79
TRAV3-201ENST00000390425 GAPVD1Q14C86 1478 aa19.97■□□□□ 0.79
TRAV3-201ENST00000390425 CYB5RLQ6IPT4 315 aa19.96■□□□□ 0.79
TRAV3-201ENST00000390425 TOP2BQ02880 1626 aa19.93■□□□□ 0.78
TRAV3-201ENST00000390425 CHMP7Q8WUX9 453 aaPredicted RBP19.91■□□□□ 0.78
TRAV3-201ENST00000390425 ADAMTS12P58397 1594 aa19.87■□□□□ 0.77
TRAV3-201ENST00000390425 WRNQ14191 1432 aaPredicted RBP eCLIP19.85■□□□□ 0.77
TRAV3-201ENST00000390425 GRIN2AQ12879 1464 aa19.81■□□□□ 0.76
TRAV3-201ENST00000390425 CEP170Q5SW79 1584 aa19.78■□□□□ 0.76
TRAV3-201ENST00000390425 ERCC6L2Q5T890 1561 aa19.75■□□□□ 0.75
TRAV3-201ENST00000390425 NUP160Q12769 1436 aa19.75■□□□□ 0.75
TRAV3-201ENST00000390425 ERICH3Q5RHP9 1530 aa19.74■□□□□ 0.75
TRAV3-201ENST00000390425 SHROOM2Q13796 1616 aa19.72■□□□□ 0.75
TRAV3-201ENST00000390425 FHAD1B1AJZ9 1412 aa19.7■□□□□ 0.74
TRAV3-201ENST00000390425 TRHP20396 242 aaPredicted RBP19.68■□□□□ 0.74
TRAV3-201ENST00000390425 RUSC2Q8N2Y8 1516 aa19.6■□□□□ 0.73
TRAV3-201ENST00000390425 PRG4Q92954 1404 aaPredicted RBP19.5■□□□□ 0.71
TRAV3-201ENST00000390425 CUL7Q14999 1698 aa19.49■□□□□ 0.71
TRAV3-201ENST00000390425 KIF13AQ9H1H9 1805 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms