RNA–Protein interactions for RNA: ENST00000390423.2

TRAV1-2-201, Transcript of T cell receptor alpha variable 1-2, humanhuman

APPRIS P1 BASIC

Gene TRAV1-2, Length 402 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2-201ENST00000390423 NISCHQ9Y2I1 1504 aa16.4■□□□□ 0.22
TRAV1-2-201ENST00000390423 ABCC9O60706 1549 aa15.42■□□□□ 0.06
TRAV1-2-201ENST00000390423 DNAJC5BQ9UF47 199 aa14.91□□□□□ -0.02
TRAV1-2-201ENST00000390423 CCDC180Q9P1Z9 1646 aa14.89□□□□□ -0.03
TRAV1-2-201ENST00000390423 RB1CC1Q8TDY2 1594 aa14.39□□□□□ -0.11
TRAV1-2-201ENST00000390423 PABPN1Q86U42 306 aaKnown RBP eCLIP14.28□□□□□ -0.12
TRAV1-2-201ENST00000390423 NACADO15069 1562 aa14.17□□□□□ -0.14
TRAV1-2-201ENST00000390423 UNC13AQ9UPW8 1703 aa14.14□□□□□ -0.15
TRAV1-2-201ENST00000390423 BICRAQ9NZM4 1560 aa14.07□□□□□ -0.16
TRAV1-2-201ENST00000390423 DCAF8L2P0C7V8 631 aa14.04□□□□□ -0.16
TRAV1-2-201ENST00000390423 DNAJC5Q9H3Z4 198 aa13.95□□□□□ -0.18
TRAV1-2-201ENST00000390423 CECR2Q9BXF3 1484 aa13.9□□□□□ -0.18
TRAV1-2-201ENST00000390423 CC2D2AQ9P2K1 1620 aa13.89□□□□□ -0.19
TRAV1-2-201ENST00000390423 MYO15BQ96JP2 1530 aa13.8□□□□□ -0.2
TRAV1-2-201ENST00000390423 EIF4G1Q04637 1599 aaKnown RBP13.73□□□□□ -0.21
TRAV1-2-201ENST00000390423 SHROOM4Q9ULL8 1493 aa13.71□□□□□ -0.21
TRAV1-2-201ENST00000390423 SCRIBQ14160 1630 aa13.61□□□□□ -0.23
TRAV1-2-201ENST00000390423 ZCCHC6Q5VYS8 1495 aaKnown RBP13.5□□□□□ -0.25
TRAV1-2-201ENST00000390423 DCAF1Q9Y4B6 1507 aa13.47□□□□□ -0.25
TRAV1-2-201ENST00000390423 CUX2O14529 1486 aa13.4□□□□□ -0.26
TRAV1-2-201ENST00000390423 ERCC6Q03468 1493 aa13.29□□□□□ -0.28
TRAV1-2-201ENST00000390423 TRIM41Q8WV44 630 aa13.18□□□□□ -0.3
TRAV1-2-201ENST00000390423 NESP48681 1621 aa13.13□□□□□ -0.31
TRAV1-2-201ENST00000390423 NCAPD3P42695 1498 aa13.1□□□□□ -0.31
TRAV1-2-201ENST00000390423 THOC2Q8NI27 1593 aaKnown RBP13.07□□□□□ -0.32
TRAV1-2-201ENST00000390423 ATAD2BQ9ULI0 1458 aa13.03□□□□□ -0.32
TRAV1-2-201ENST00000390423 SMARCA2P51531 1590 aa12.98□□□□□ -0.33
TRAV1-2-201ENST00000390423 HMGXB3Q12766 1538 aa12.97□□□□□ -0.33
TRAV1-2-201ENST00000390423 KIF21AQ7Z4S6 1674 aa12.93□□□□□ -0.34
TRAV1-2-201ENST00000390423 SMARCA4P51532 1647 aa12.9□□□□□ -0.34
TRAV1-2-201ENST00000390423 LAMC3Q9Y6N6 1575 aa12.87□□□□□ -0.35
TRAV1-2-201ENST00000390423 BAZ1BQ9UIG0 1483 aaKnown RBP12.86□□□□□ -0.35
TRAV1-2-201ENST00000390423 BAZ1AQ9NRL2 1556 aaPredicted RBP12.81□□□□□ -0.36
TRAV1-2-201ENST00000390423 PDS5BQ9NTI5 1447 aa12.79□□□□□ -0.36
TRAV1-2-201ENST00000390423 MRC2Q9UBG0 1479 aa12.76□□□□□ -0.37
TRAV1-2-201ENST00000390423 WDR62O43379 1518 aa12.76□□□□□ -0.37
TRAV1-2-201ENST00000390423 PEG3Q9GZU2 1588 aa12.75□□□□□ -0.37
TRAV1-2-201ENST00000390423 OSCARQ8IYS5 282 aa12.69□□□□□ -0.38
TRAV1-2-201ENST00000390423 MROH2BQ7Z745 1585 aa12.68□□□□□ -0.38
TRAV1-2-201ENST00000390423 CADPSQ9ULU8 1353 aa12.68□□□□□ -0.38
TRAV1-2-201ENST00000390423 RIMBP3CA6NJZ7 1639 aa12.66□□□□□ -0.38
TRAV1-2-201ENST00000390423 RIMBP3BA6NNM3 1639 aa12.66□□□□□ -0.38
TRAV1-2-201ENST00000390423 RIMBP3Q9UFD9 1639 aa12.66□□□□□ -0.38
TRAV1-2-201ENST00000390423 CEP164Q9UPV0 1460 aa12.61□□□□□ -0.39
TRAV1-2-201ENST00000390423 FANCD2Q9BXW9 1451 aa12.57□□□□□ -0.4
TRAV1-2-201ENST00000390423 ARHGEF11O15085 1522 aa12.56□□□□□ -0.4
TRAV1-2-201ENST00000390423 URB2Q14146 1524 aaKnown RBP12.53□□□□□ -0.4
TRAV1-2-201ENST00000390423 WIZO95785 1651 aa12.5□□□□□ -0.41
TRAV1-2-201ENST00000390423 CYB5RLQ6IPT4 315 aa12.48□□□□□ -0.41
TRAV1-2-201ENST00000390423 TRHP20396 242 aaPredicted RBP12.47□□□□□ -0.41
TRAV1-2-201ENST00000390423 ZNF608Q9ULD9 1512 aaPredicted RBP12.47□□□□□ -0.41
TRAV1-2-201ENST00000390423 CFTRP13569 1480 aa12.46□□□□□ -0.42
TRAV1-2-201ENST00000390423 ARAP1Q96P48 1450 aa12.42□□□□□ -0.42
TRAV1-2-201ENST00000390423 AEBP2Q6ZN18 517 aaPredicted RBP12.41□□□□□ -0.42
TRAV1-2-201ENST00000390423 IFT140Q96RY7 1462 aa12.36□□□□□ -0.43
TRAV1-2-201ENST00000390423 EIF4G3O43432 1585 aaKnown RBP12.35□□□□□ -0.43
TRAV1-2-201ENST00000390423 CHD1O14646 1710 aa12.35□□□□□ -0.43
TRAV1-2-201ENST00000390423 TOPBP1Q92547 1522 aa12.29□□□□□ -0.44
TRAV1-2-201ENST00000390423 PRDM2Q13029 1718 aa12.28□□□□□ -0.44
TRAV1-2-201ENST00000390423 RSF1Q96T23 1441 aaPredicted RBP12.28□□□□□ -0.44
TRAV1-2-201ENST00000390423 TOP2AP11388 1531 aaKnown RBP12.27□□□□□ -0.44
TRAV1-2-201ENST00000390423 AQRO60306 1485 aaKnown RBP eCLIP12.27□□□□□ -0.45
TRAV1-2-201ENST00000390423 FBLN2P98095 1184 aa12.25□□□□□ -0.45
TRAV1-2-201ENST00000390423 TARBP1Q13395 1621 aaKnown RBP12.22□□□□□ -0.45
TRAV1-2-201ENST00000390423 CLASP1Q7Z460 1538 aa12.19□□□□□ -0.46
TRAV1-2-201ENST00000390423 DNMBPQ6XZF7 1577 aa12.18□□□□□ -0.46
TRAV1-2-201ENST00000390423 CCDC88BA6NC98 1476 aa12.14□□□□□ -0.47
TRAV1-2-201ENST00000390423 ABCC8Q09428 1581 aa12.13□□□□□ -0.47
TRAV1-2-201ENST00000390423 POLA1P09884 1462 aaPredicted RBP12.13□□□□□ -0.47
TRAV1-2-201ENST00000390423 SNAPC4Q5SXM2 1469 aa12.13□□□□□ -0.47
TRAV1-2-201ENST00000390423 RAD54L2Q9Y4B4 1467 aa12.13□□□□□ -0.47
TRAV1-2-201ENST00000390423 TDRD9Q8NDG6 1382 aaKnown RBP12.12□□□□□ -0.47
TRAV1-2-201ENST00000390423 SYNJ1O43426 1573 aa12.09□□□□□ -0.47
TRAV1-2-201ENST00000390423 GAPVD1Q14C86 1478 aa12.08□□□□□ -0.48
TRAV1-2-201ENST00000390423 CHMP7Q8WUX9 453 aaPredicted RBP12.05□□□□□ -0.48
TRAV1-2-201ENST00000390423 SOGA1O94964 1423 aa12.03□□□□□ -0.48
TRAV1-2-201ENST00000390423 MAGI1Q96QZ7 1491 aaPredicted RBP12.02□□□□□ -0.48
TRAV1-2-201ENST00000390423 ERCC6L2Q5T890 1561 aa12.02□□□□□ -0.49
TRAV1-2-201ENST00000390423 ILDR1Q86SU0 546 aaPredicted RBP12.02□□□□□ -0.49
TRAV1-2-201ENST00000390423 SYNJ2O15056 1496 aa12.01□□□□□ -0.49
TRAV1-2-201ENST00000390423 FGD5Q6ZNL6 1462 aa12□□□□□ -0.49
TRAV1-2-201ENST00000390423 WDR97A6NE52 1622 aa11.98□□□□□ -0.49
TRAV1-2-201ENST00000390423 GRIN2BQ13224 1484 aa11.98□□□□□ -0.49
TRAV1-2-201ENST00000390423 KIF13AQ9H1H9 1805 aa11.96□□□□□ -0.49
TRAV1-2-201ENST00000390423 PBRM1Q86U86 1689 aa11.94□□□□□ -0.5
TRAV1-2-201ENST00000390423 CUX1P39880 1505 aa11.93□□□□□ -0.5
TRAV1-2-201ENST00000390423 KDM4FA0A1W2PPD8 638 aa11.91□□□□□ -0.5
TRAV1-2-201ENST00000390423 CEP170Q5SW79 1584 aa11.9□□□□□ -0.5
TRAV1-2-201ENST00000390423 ABCA5Q8WWZ7 1642 aa11.86□□□□□ -0.51
TRAV1-2-201ENST00000390423 GRIN2AQ12879 1464 aa11.85□□□□□ -0.51
TRAV1-2-201ENST00000390423 SHROOM2Q13796 1616 aa11.84□□□□□ -0.51
TRAV1-2-201ENST00000390423 NUP160Q12769 1436 aa11.83□□□□□ -0.52
TRAV1-2-201ENST00000390423 ADAMTS12P58397 1594 aa11.81□□□□□ -0.52
TRAV1-2-201ENST00000390423 ABCA10Q8WWZ4 1543 aa11.81□□□□□ -0.52
TRAV1-2-201ENST00000390423 FAM69CQ0P6D2 419 aa11.8□□□□□ -0.52
TRAV1-2-201ENST00000390423 ABCC10Q5T3U5 1492 aa11.8□□□□□ -0.52
TRAV1-2-201ENST00000390423 DIP2BQ9P265 1576 aa11.79□□□□□ -0.52
TRAV1-2-201ENST00000390423 KDM6BO15054 1643 aa11.78□□□□□ -0.52
TRAV1-2-201ENST00000390423 PRG4Q92954 1404 aaPredicted RBP11.76□□□□□ -0.53
TRAV1-2-201ENST00000390423 MAPKBP1O60336 1514 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 992 ms