RNA–Protein interactions for RNA: ENST00000389134.9

CNEP1R1-201, Transcript of CTD nuclear envelope phosphatase 1 regulatory subunit 1, humanhuman

TSL 3

Gene CNEP1R1, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNEP1R1-201ENST00000389134 NISCHQ9Y2I1 1504 aa54.39■■■■■ 6.3
CNEP1R1-201ENST00000389134 ABCC9O60706 1549 aa49.61■■■■■ 5.53
CNEP1R1-201ENST00000389134 CCDC180Q9P1Z9 1646 aa49.12■■■■■ 5.45
CNEP1R1-201ENST00000389134 DNAJC5BQ9UF47 199 aa47.06■■■■■ 5.12
CNEP1R1-201ENST00000389134 RB1CC1Q8TDY2 1594 aa47.04■■■■■ 5.12
CNEP1R1-201ENST00000389134 NACADO15069 1562 aa46.58■■■■■ 5.05
CNEP1R1-201ENST00000389134 DCAF8L2P0C7V8 631 aa46.16■■■■■ 4.98
CNEP1R1-201ENST00000389134 PABPN1Q86U42 306 aaKnown RBP eCLIP46.09■■■■■ 4.97
CNEP1R1-201ENST00000389134 UNC13AQ9UPW8 1703 aa46.03■■■■■ 4.96
CNEP1R1-201ENST00000389134 MYO15BQ96JP2 1530 aa45.75■■■■■ 4.91
CNEP1R1-201ENST00000389134 BICRAQ9NZM4 1560 aa45.65■■■■■ 4.9
CNEP1R1-201ENST00000389134 SHROOM4Q9ULL8 1493 aa45.04■■■■■ 4.8
CNEP1R1-201ENST00000389134 ZCCHC6Q5VYS8 1495 aaKnown RBP44.93■■■■■ 4.78
CNEP1R1-201ENST00000389134 DCAF1Q9Y4B6 1507 aa44.93■■■■■ 4.78
CNEP1R1-201ENST00000389134 CC2D2AQ9P2K1 1620 aa44.84■■■■■ 4.77
CNEP1R1-201ENST00000389134 CECR2Q9BXF3 1484 aa44.78■■■■■ 4.76
CNEP1R1-201ENST00000389134 SCRIBQ14160 1630 aa44.65■■■■■ 4.74
CNEP1R1-201ENST00000389134 EIF4G1Q04637 1599 aaKnown RBP44.59■■■■■ 4.73
CNEP1R1-201ENST00000389134 DNAJC5Q9H3Z4 198 aa43.73■■■■■ 4.59
CNEP1R1-201ENST00000389134 CUX2O14529 1486 aa43.07■■■■■ 4.49
CNEP1R1-201ENST00000389134 NCAPD3P42695 1498 aa42.99■■■■■ 4.47
CNEP1R1-201ENST00000389134 ERCC6Q03468 1493 aa42.93■■■■■ 4.46
CNEP1R1-201ENST00000389134 ATAD2BQ9ULI0 1458 aa42.74■■■■■ 4.43
CNEP1R1-201ENST00000389134 SMARCA2P51531 1590 aa42.64■■■■■ 4.42
CNEP1R1-201ENST00000389134 HMGXB3Q12766 1538 aa42.61■■■■■ 4.41
CNEP1R1-201ENST00000389134 SMARCA4P51532 1647 aa42.57■■■■■ 4.4
CNEP1R1-201ENST00000389134 NESP48681 1621 aa42.45■■■■■ 4.39
CNEP1R1-201ENST00000389134 BAZ1BQ9UIG0 1483 aaKnown RBP42.3■■■■■ 4.36
CNEP1R1-201ENST00000389134 BAZ1AQ9NRL2 1556 aaPredicted RBP42.28■■■■■ 4.36
CNEP1R1-201ENST00000389134 PEG3Q9GZU2 1588 aa42.18■■■■■ 4.34
CNEP1R1-201ENST00000389134 THOC2Q8NI27 1593 aaKnown RBP42.17■■■■■ 4.34
CNEP1R1-201ENST00000389134 LAMC3Q9Y6N6 1575 aa42.14■■■■■ 4.34
CNEP1R1-201ENST00000389134 KIF21AQ7Z4S6 1674 aa41.95■■■■■ 4.31
CNEP1R1-201ENST00000389134 PDS5BQ9NTI5 1447 aa41.91■■■■■ 4.3
CNEP1R1-201ENST00000389134 MROH2BQ7Z745 1585 aa41.88■■■■■ 4.29
CNEP1R1-201ENST00000389134 CADPSQ9ULU8 1353 aa41.64■■■■■ 4.26
CNEP1R1-201ENST00000389134 MRC2Q9UBG0 1479 aa41.54■■■■■ 4.24
CNEP1R1-201ENST00000389134 TRIM41Q8WV44 630 aa41.51■■■■■ 4.24
CNEP1R1-201ENST00000389134 WDR62O43379 1518 aa41.47■■■■■ 4.23
CNEP1R1-201ENST00000389134 WIZO95785 1651 aa41.37■■■■■ 4.21
CNEP1R1-201ENST00000389134 CEP164Q9UPV0 1460 aa41.27■■■■■ 4.2
CNEP1R1-201ENST00000389134 FANCD2Q9BXW9 1451 aa41.15■■■■■ 4.18
CNEP1R1-201ENST00000389134 CFTRP13569 1480 aa41.04■■■■■ 4.16
CNEP1R1-201ENST00000389134 OSCARQ8IYS5 282 aa41.03■■■■■ 4.16
CNEP1R1-201ENST00000389134 URB2Q14146 1524 aaKnown RBP40.84■■■■■ 4.13
CNEP1R1-201ENST00000389134 TOP2AP11388 1531 aaKnown RBP40.81■■■■■ 4.12
CNEP1R1-201ENST00000389134 RSF1Q96T23 1441 aaPredicted RBP40.8■■■■■ 4.12
CNEP1R1-201ENST00000389134 PRDM2Q13029 1718 aa40.68■■■■■ 4.1
CNEP1R1-201ENST00000389134 RIMBP3CA6NJZ7 1639 aa40.53■■■■■ 4.08
CNEP1R1-201ENST00000389134 RIMBP3BA6NNM3 1639 aa40.53■■■■■ 4.08
CNEP1R1-201ENST00000389134 RIMBP3Q9UFD9 1639 aa40.53■■■■■ 4.08
CNEP1R1-201ENST00000389134 IFT140Q96RY7 1462 aa40.48■■■■■ 4.07
CNEP1R1-201ENST00000389134 ZNF608Q9ULD9 1512 aaPredicted RBP40.42■■■■■ 4.06
CNEP1R1-201ENST00000389134 CCDC88BA6NC98 1476 aa40.34■■■■■ 4.05
CNEP1R1-201ENST00000389134 ARHGEF11O15085 1522 aa40.32■■■■■ 4.04
CNEP1R1-201ENST00000389134 TOPBP1Q92547 1522 aa40.32■■■■■ 4.04
CNEP1R1-201ENST00000389134 ABCC8Q09428 1581 aa40.26■■■■■ 4.04
CNEP1R1-201ENST00000389134 EIF4G3O43432 1585 aaKnown RBP40.19■■■■■ 4.02
CNEP1R1-201ENST00000389134 DNMBPQ6XZF7 1577 aa40.13■■■■■ 4.01
CNEP1R1-201ENST00000389134 CYB5RLQ6IPT4 315 aa40.07■■■■■ 4.01
CNEP1R1-201ENST00000389134 CHD1O14646 1710 aa40.06■■■■■ 4
CNEP1R1-201ENST00000389134 TARBP1Q13395 1621 aaKnown RBP40.02■■■■■ 4
CNEP1R1-201ENST00000389134 AQRO60306 1485 aaKnown RBP eCLIP40■■■■□ 3.998e-7■■■□□ 16.1
CNEP1R1-201ENST00000389134 FBLN2P98095 1184 aa39.87■■■■□ 3.97
CNEP1R1-201ENST00000389134 ARAP1Q96P48 1450 aa39.87■■■■□ 3.97
CNEP1R1-201ENST00000389134 POLA1P09884 1462 aaPredicted RBP39.86■■■■□ 3.97
CNEP1R1-201ENST00000389134 TRHP20396 242 aaPredicted RBP39.83■■■■□ 3.97
CNEP1R1-201ENST00000389134 RAD54L2Q9Y4B4 1467 aa39.7■■■■□ 3.95
CNEP1R1-201ENST00000389134 SOGA1O94964 1423 aa39.68■■■■□ 3.94
CNEP1R1-201ENST00000389134 TDRD9Q8NDG6 1382 aaKnown RBP39.65■■■■□ 3.94
CNEP1R1-201ENST00000389134 WDR97A6NE52 1622 aa39.62■■■■□ 3.93
CNEP1R1-201ENST00000389134 SNAPC4Q5SXM2 1469 aa39.57■■■■□ 3.93
CNEP1R1-201ENST00000389134 CLASP1Q7Z460 1538 aa39.54■■■■□ 3.92
CNEP1R1-201ENST00000389134 FGD5Q6ZNL6 1462 aa39.51■■■■□ 3.92
CNEP1R1-201ENST00000389134 CHMP7Q8WUX9 453 aaPredicted RBP39.51■■■■□ 3.92
CNEP1R1-201ENST00000389134 SYNJ1O43426 1573 aa39.5■■■■□ 3.91
CNEP1R1-201ENST00000389134 MAGI1Q96QZ7 1491 aaPredicted RBP39.49■■■■□ 3.91
CNEP1R1-201ENST00000389134 GRIN2BQ13224 1484 aa39.42■■■■□ 3.9
CNEP1R1-201ENST00000389134 CUX1P39880 1505 aa39.39■■■■□ 3.9
CNEP1R1-201ENST00000389134 SYNJ2O15056 1496 aa39.35■■■■□ 3.89
CNEP1R1-201ENST00000389134 PBRM1Q86U86 1689 aa39.25■■■■□ 3.87
CNEP1R1-201ENST00000389134 GAPVD1Q14C86 1478 aa39.2■■■■□ 3.87
CNEP1R1-201ENST00000389134 AEBP2Q6ZN18 517 aaPredicted RBP39.14■■■■□ 3.86
CNEP1R1-201ENST00000389134 ABCA10Q8WWZ4 1543 aa39.06■■■■□ 3.84
CNEP1R1-201ENST00000389134 ABCA5Q8WWZ7 1642 aa39.05■■■■□ 3.84
CNEP1R1-201ENST00000389134 GRIN2AQ12879 1464 aa38.89■■■■□ 3.82
CNEP1R1-201ENST00000389134 ERCC6L2Q5T890 1561 aa38.84■■■■□ 3.81
CNEP1R1-201ENST00000389134 ADAMTS12P58397 1594 aa38.79■■■■□ 3.8
CNEP1R1-201ENST00000389134 NUP160Q12769 1436 aa38.79■■■■□ 3.8
CNEP1R1-201ENST00000389134 WRNQ14191 1432 aaPredicted RBP eCLIP38.79■■■■□ 3.8
CNEP1R1-201ENST00000389134 CEP170Q5SW79 1584 aa38.78■■■■□ 3.8
CNEP1R1-201ENST00000389134 SHROOM2Q13796 1616 aa38.71■■■■□ 3.79
CNEP1R1-201ENST00000389134 FHAD1B1AJZ9 1412 aa38.68■■■■□ 3.78
CNEP1R1-201ENST00000389134 BIVM-ERCC5R4GMW8 1640 aa38.64■■■■□ 3.78
CNEP1R1-201ENST00000389134 TOP2BQ02880 1626 aa38.63■■■■□ 3.77
CNEP1R1-201ENST00000389134 ERICH3Q5RHP9 1530 aa38.58■■■■□ 3.77
CNEP1R1-201ENST00000389134 KIF13AQ9H1H9 1805 aa38.57■■■■□ 3.77
CNEP1R1-201ENST00000389134 SUPT5HO00267 1087 aaKnown RBP38.54■■■■□ 3.76
CNEP1R1-201ENST00000389134 PRG4Q92954 1404 aaPredicted RBP38.46■■■■□ 3.75
CNEP1R1-201ENST00000389134 JPH4Q96JJ6 628 aa38.42■■■■□ 3.74
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms