RNA–Protein interactions for RNA: ENST00000382519.8

CD9-204, Transcript of CD9 molecule, humanhuman

TSL 2

Gene CD9, Length 800 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-204ENST00000382519 NISCHQ9Y2I1 1504 aa44.98■■■■■ 4.79
CD9-204ENST00000382519 CCDC180Q9P1Z9 1646 aa40.27■■■■■ 4.04
CD9-204ENST00000382519 ABCC9O60706 1549 aa39.79■■■■□ 3.96
CD9-204ENST00000382519 RB1CC1Q8TDY2 1594 aa38.09■■■■□ 3.69
CD9-204ENST00000382519 NACADO15069 1562 aa37.89■■■■□ 3.66
CD9-204ENST00000382519 DCAF8L2P0C7V8 631 aa37.78■■■■□ 3.64
CD9-204ENST00000382519 MYO15BQ96JP2 1530 aa37.47■■■■□ 3.59
CD9-204ENST00000382519 ZCCHC6Q5VYS8 1495 aaKnown RBP37.39■■■■□ 3.58
CD9-204ENST00000382519 UNC13AQ9UPW8 1703 aa37.3■■■■□ 3.56
CD9-204ENST00000382519 DCAF1Q9Y4B6 1507 aa37.17■■■■□ 3.54
CD9-204ENST00000382519 PABPN1Q86U42 306 aaKnown RBP eCLIP37.06■■■■□ 3.52
CD9-204ENST00000382519 BICRAQ9NZM4 1560 aa36.93■■■■□ 3.5
CD9-204ENST00000382519 DNAJC5BQ9UF47 199 aa36.82■■■■□ 3.48
CD9-204ENST00000382519 SCRIBQ14160 1630 aa36.74■■■■□ 3.47
CD9-204ENST00000382519 SHROOM4Q9ULL8 1493 aa36.47■■■■□ 3.43
CD9-204ENST00000382519 EIF4G1Q04637 1599 aaKnown RBP36■■■■□ 3.35
CD9-204ENST00000382519 CC2D2AQ9P2K1 1620 aa35.98■■■■□ 3.35
CD9-204ENST00000382519 CECR2Q9BXF3 1484 aa35.78■■■■□ 3.32
CD9-204ENST00000382519 SMARCA4P51532 1647 aa35.06■■■■□ 3.2
CD9-204ENST00000382519 BAZ1AQ9NRL2 1556 aaPredicted RBP34.92■■■■□ 3.18
CD9-204ENST00000382519 NCAPD3P42695 1498 aa34.92■■■■□ 3.18
CD9-204ENST00000382519 ATAD2BQ9ULI0 1458 aa34.9■■■■□ 3.18
CD9-204ENST00000382519 SMARCA2P51531 1590 aa34.88■■■■□ 3.17
CD9-204ENST00000382519 HMGXB3Q12766 1538 aa34.78■■■■□ 3.16
CD9-204ENST00000382519 MROH2BQ7Z745 1585 aa34.68■■■■□ 3.14
CD9-204ENST00000382519 PEG3Q9GZU2 1588 aa34.66■■■■□ 3.14
CD9-204ENST00000382519 BAZ1BQ9UIG0 1483 aaKnown RBP34.65■■■■□ 3.14
CD9-204ENST00000382519 ERCC6Q03468 1493 aa34.35■■■■□ 3.09
CD9-204ENST00000382519 WIZO95785 1651 aa34.34■■■■□ 3.09
CD9-204ENST00000382519 NESP48681 1621 aa34.3■■■■□ 3.08
CD9-204ENST00000382519 LAMC3Q9Y6N6 1575 aa34.15■■■■□ 3.06
CD9-204ENST00000382519 CUX2O14529 1486 aa34.1■■■■□ 3.05
CD9-204ENST00000382519 RSF1Q96T23 1441 aaPredicted RBP34.08■■■■□ 3.05
CD9-204ENST00000382519 KIF21AQ7Z4S6 1674 aa33.96■■■■□ 3.03
CD9-204ENST00000382519 TOP2AP11388 1531 aaKnown RBP33.92■■■■□ 3.02
CD9-204ENST00000382519 THOC2Q8NI27 1593 aaKnown RBP33.91■■■■□ 3.02
CD9-204ENST00000382519 PDS5BQ9NTI5 1447 aa33.89■■■■□ 3.02
CD9-204ENST00000382519 CADPSQ9ULU8 1353 aa33.89■■■■□ 3.02
CD9-204ENST00000382519 CFTRP13569 1480 aa33.61■■■□□ 2.97
CD9-204ENST00000382519 MRC2Q9UBG0 1479 aa33.61■■■□□ 2.97
CD9-204ENST00000382519 CEP164Q9UPV0 1460 aa33.58■■■□□ 2.97
CD9-204ENST00000382519 FANCD2Q9BXW9 1451 aa33.56■■■□□ 2.96
CD9-204ENST00000382519 WDR62O43379 1518 aa33.52■■■□□ 2.96
CD9-204ENST00000382519 DNAJC5Q9H3Z4 198 aa33.49■■■□□ 2.95
CD9-204ENST00000382519 PRDM2Q13029 1718 aa33.48■■■□□ 2.95
CD9-204ENST00000382519 CCDC88BA6NC98 1476 aa33.48■■■□□ 2.95
CD9-204ENST00000382519 URB2Q14146 1524 aaKnown RBP33.25■■■□□ 2.91
CD9-204ENST00000382519 TOPBP1Q92547 1522 aa32.97■■■□□ 2.87
CD9-204ENST00000382519 SUPT5HO00267 1087 aaKnown RBP32.93■■■□□ 2.86
CD9-204ENST00000382519 DNMBPQ6XZF7 1577 aa32.92■■■□□ 2.86
CD9-204ENST00000382519 ABCC8Q09428 1581 aa32.91■■■□□ 2.86
CD9-204ENST00000382519 IFT140Q96RY7 1462 aa32.86■■■□□ 2.85
CD9-204ENST00000382519 ZNF608Q9ULD9 1512 aaPredicted RBP32.76■■■□□ 2.83
CD9-204ENST00000382519 EIF4G3O43432 1585 aaKnown RBP32.68■■■□□ 2.82
CD9-204ENST00000382519 TARBP1Q13395 1621 aaKnown RBP32.66■■■□□ 2.82
CD9-204ENST00000382519 POLA1P09884 1462 aaPredicted RBP32.66■■■□□ 2.82
CD9-204ENST00000382519 CUX1P39880 1505 aa32.56■■■□□ 2.8
CD9-204ENST00000382519 OSCARQ8IYS5 282 aa32.56■■■□□ 2.8
CD9-204ENST00000382519 FGD5Q6ZNL6 1462 aa32.54■■■□□ 2.8
CD9-204ENST00000382519 RAD54L2Q9Y4B4 1467 aa32.53■■■□□ 2.8
CD9-204ENST00000382519 AQRO60306 1485 aaKnown RBP eCLIP32.51■■■□□ 2.79
CD9-204ENST00000382519 SOGA1O94964 1423 aa32.49■■■□□ 2.79
CD9-204ENST00000382519 CHD1O14646 1710 aa32.39■■■□□ 2.78
CD9-204ENST00000382519 WDR97A6NE52 1622 aa32.37■■■□□ 2.77
CD9-204ENST00000382519 TDRD9Q8NDG6 1382 aaKnown RBP32.37■■■□□ 2.77
CD9-204ENST00000382519 TRIM41Q8WV44 630 aa32.3■■■□□ 2.76
CD9-204ENST00000382519 SNAPC4Q5SXM2 1469 aa32.23■■■□□ 2.75
CD9-204ENST00000382519 FBLN2P98095 1184 aa32.22■■■□□ 2.75
CD9-204ENST00000382519 BIVM-ERCC5R4GMW8 1640 aa32.21■■■□□ 2.75
CD9-204ENST00000382519 PBRM1Q86U86 1689 aa32.2■■■□□ 2.74
CD9-204ENST00000382519 RIMBP3CA6NJZ7 1639 aa32.19■■■□□ 2.74
CD9-204ENST00000382519 RIMBP3BA6NNM3 1639 aa32.19■■■□□ 2.74
CD9-204ENST00000382519 RIMBP3Q9UFD9 1639 aa32.19■■■□□ 2.74
CD9-204ENST00000382519 TOP2BQ02880 1626 aa32.18■■■□□ 2.74
CD9-204ENST00000382519 WRNQ14191 1432 aaPredicted RBP eCLIP32.18■■■□□ 2.74
CD9-204ENST00000382519 GRIN2BQ13224 1484 aa32.18■■■□□ 2.74
CD9-204ENST00000382519 SYNJ1O43426 1573 aa32.17■■■□□ 2.74
CD9-204ENST00000382519 ABCA10Q8WWZ4 1543 aa32.16■■■□□ 2.74
CD9-204ENST00000382519 MAGI1Q96QZ7 1491 aaPredicted RBP32.15■■■□□ 2.74
CD9-204ENST00000382519 GAPVD1Q14C86 1478 aa32.13■■■□□ 2.73
CD9-204ENST00000382519 ABCA5Q8WWZ7 1642 aa32.13■■■□□ 2.73
CD9-204ENST00000382519 ARHGEF11O15085 1522 aa32.1■■■□□ 2.73
CD9-204ENST00000382519 SYNJ2O15056 1496 aa32.03■■■□□ 2.72
CD9-204ENST00000382519 CHMP7Q8WUX9 453 aaPredicted RBP32.03■■■□□ 2.72
CD9-204ENST00000382519 CLASP1Q7Z460 1538 aa31.95■■■□□ 2.7
CD9-204ENST00000382519 ADAMTS12P58397 1594 aa31.87■■■□□ 2.69
CD9-204ENST00000382519 ARAP1Q96P48 1450 aa31.81■■■□□ 2.68
CD9-204ENST00000382519 ERICH3Q5RHP9 1530 aa31.79■■■□□ 2.68
CD9-204ENST00000382519 GRIN2AQ12879 1464 aa31.78■■■□□ 2.68
CD9-204ENST00000382519 CYB5RLQ6IPT4 315 aa31.78■■■□□ 2.68
CD9-204ENST00000382519 FHAD1B1AJZ9 1412 aa31.73■■■□□ 2.67
CD9-204ENST00000382519 CEP170Q5SW79 1584 aa31.68■■■□□ 2.66
CD9-204ENST00000382519 NUP160Q12769 1436 aa31.63■■■□□ 2.65
CD9-204ENST00000382519 KIF27Q86VH2 1401 aa31.54■■■□□ 2.64
CD9-204ENST00000382519 SHROOM2Q13796 1616 aa31.49■■■□□ 2.63
CD9-204ENST00000382519 ERCC6L2Q5T890 1561 aa31.48■■■□□ 2.63
CD9-204ENST00000382519 CUL7Q14999 1698 aa31.47■■■□□ 2.63
CD9-204ENST00000382519 RUSC2Q8N2Y8 1516 aa31.41■■■□□ 2.62
CD9-204ENST00000382519 IGF1RP08069 1367 aa31.4■■■□□ 2.62
CD9-204ENST00000382519 TRHP20396 242 aaPredicted RBP31.33■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms