RNA–Protein interactions for RNA: ENST00000377349.6

CBWD3-204, Transcript of COBW domain containing 3, humanhuman

TSL 2

Gene CBWD3, Length 1,403 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-204ENST00000377349 NISCHQ9Y2I1 1504 aa48.41■■■■■ 5.34
CBWD3-204ENST00000377349 CCDC180Q9P1Z9 1646 aa43.53■■■■■ 4.56
CBWD3-204ENST00000377349 ABCC9O60706 1549 aa43.46■■■■■ 4.55
CBWD3-204ENST00000377349 RB1CC1Q8TDY2 1594 aa41.37■■■■■ 4.21
CBWD3-204ENST00000377349 NACADO15069 1562 aa41.09■■■■■ 4.17
CBWD3-204ENST00000377349 DNAJC5BQ9UF47 199 aa40.85■■■■■ 4.13
CBWD3-204ENST00000377349 UNC13AQ9UPW8 1703 aa40.66■■■■■ 4.1
CBWD3-204ENST00000377349 DCAF8L2P0C7V8 631 aa40.66■■■■■ 4.1
CBWD3-204ENST00000377349 MYO15BQ96JP2 1530 aa40.54■■■■■ 4.08
CBWD3-204ENST00000377349 PABPN1Q86U42 306 aaKnown RBP eCLIP40.41■■■■■ 4.06
CBWD3-204ENST00000377349 BICRAQ9NZM4 1560 aa40.28■■■■■ 4.04
CBWD3-204ENST00000377349 ZCCHC6Q5VYS8 1495 aaKnown RBP40.13■■■■■ 4.02
CBWD3-204ENST00000377349 DCAF1Q9Y4B6 1507 aa40.01■■■■□ 3.99
CBWD3-204ENST00000377349 SHROOM4Q9ULL8 1493 aa39.64■■■■□ 3.94
CBWD3-204ENST00000377349 SCRIBQ14160 1630 aa39.61■■■■□ 3.93
CBWD3-204ENST00000377349 CC2D2AQ9P2K1 1620 aa39.33■■■■□ 3.89
CBWD3-204ENST00000377349 EIF4G1Q04637 1599 aaKnown RBP39.24■■■■□ 3.87
CBWD3-204ENST00000377349 CECR2Q9BXF3 1484 aa39.16■■■■□ 3.86
CBWD3-204ENST00000377349 NCAPD3P42695 1498 aa37.92■■■■□ 3.66
CBWD3-204ENST00000377349 ATAD2BQ9ULI0 1458 aa37.81■■■■□ 3.64
CBWD3-204ENST00000377349 SMARCA4P51532 1647 aa37.81■■■■□ 3.64
CBWD3-204ENST00000377349 SMARCA2P51531 1590 aa37.69■■■■□ 3.62
CBWD3-204ENST00000377349 HMGXB3Q12766 1538 aa37.67■■■■□ 3.62
CBWD3-204ENST00000377349 BAZ1AQ9NRL2 1556 aaPredicted RBP37.56■■■■□ 3.6
CBWD3-204ENST00000377349 DNAJC5Q9H3Z4 198 aa37.49■■■■□ 3.59
CBWD3-204ENST00000377349 CUX2O14529 1486 aa37.49■■■■□ 3.59
CBWD3-204ENST00000377349 PEG3Q9GZU2 1588 aa37.47■■■■□ 3.59
CBWD3-204ENST00000377349 ERCC6Q03468 1493 aa37.46■■■■□ 3.59
CBWD3-204ENST00000377349 BAZ1BQ9UIG0 1483 aaKnown RBP37.4■■■■□ 3.58
CBWD3-204ENST00000377349 NESP48681 1621 aa37.38■■■■□ 3.57
CBWD3-204ENST00000377349 MROH2BQ7Z745 1585 aa37.32■■■■□ 3.56
CBWD3-204ENST00000377349 LAMC3Q9Y6N6 1575 aa37.1■■■■□ 3.53
CBWD3-204ENST00000377349 THOC2Q8NI27 1593 aaKnown RBP37.07■■■■□ 3.52
CBWD3-204ENST00000377349 KIF21AQ7Z4S6 1674 aa36.98■■■■□ 3.51
CBWD3-204ENST00000377349 WIZO95785 1651 aa36.91■■■■□ 3.5
CBWD3-204ENST00000377349 PDS5BQ9NTI5 1447 aa36.79■■■■□ 3.48
CBWD3-204ENST00000377349 CADPSQ9ULU8 1353 aa36.73■■■■□ 3.47
CBWD3-204ENST00000377349 MRC2Q9UBG0 1479 aa36.54■■■■□ 3.44
CBWD3-204ENST00000377349 WDR62O43379 1518 aa36.51■■■■□ 3.43
CBWD3-204ENST00000377349 RSF1Q96T23 1441 aaPredicted RBP36.49■■■■□ 3.43
CBWD3-204ENST00000377349 TOP2AP11388 1531 aaKnown RBP36.39■■■■□ 3.42
CBWD3-204ENST00000377349 CEP164Q9UPV0 1460 aa36.37■■■■□ 3.41
CBWD3-204ENST00000377349 CFTRP13569 1480 aa36.34■■■■□ 3.41
CBWD3-204ENST00000377349 FANCD2Q9BXW9 1451 aa36.34■■■■□ 3.41
CBWD3-204ENST00000377349 PRDM2Q13029 1718 aa36.14■■■■□ 3.38
CBWD3-204ENST00000377349 URB2Q14146 1524 aaKnown RBP36.09■■■■□ 3.37
CBWD3-204ENST00000377349 CCDC88BA6NC98 1476 aa35.96■■■■□ 3.35
CBWD3-204ENST00000377349 TRIM41Q8WV44 630 aa35.74■■■■□ 3.31
CBWD3-204ENST00000377349 TOPBP1Q92547 1522 aa35.67■■■■□ 3.3
CBWD3-204ENST00000377349 OSCARQ8IYS5 282 aa35.67■■■■□ 3.3
CBWD3-204ENST00000377349 ZNF608Q9ULD9 1512 aaPredicted RBP35.65■■■■□ 3.3
CBWD3-204ENST00000377349 IFT140Q96RY7 1462 aa35.64■■■■□ 3.3
CBWD3-204ENST00000377349 DNMBPQ6XZF7 1577 aa35.55■■■■□ 3.28
CBWD3-204ENST00000377349 ABCC8Q09428 1581 aa35.53■■■■□ 3.28
CBWD3-204ENST00000377349 EIF4G3O43432 1585 aaKnown RBP35.48■■■■□ 3.27
CBWD3-204ENST00000377349 TARBP1Q13395 1621 aaKnown RBP35.42■■■■□ 3.26
CBWD3-204ENST00000377349 RIMBP3CA6NJZ7 1639 aa35.38■■■■□ 3.25
CBWD3-204ENST00000377349 RIMBP3BA6NNM3 1639 aa35.38■■■■□ 3.25
CBWD3-204ENST00000377349 RIMBP3Q9UFD9 1639 aa35.38■■■■□ 3.25
CBWD3-204ENST00000377349 POLA1P09884 1462 aaPredicted RBP35.31■■■■□ 3.24
CBWD3-204ENST00000377349 CHD1O14646 1710 aa35.28■■■■□ 3.24
CBWD3-204ENST00000377349 AQRO60306 1485 aaKnown RBP eCLIP35.27■■■■□ 3.24
CBWD3-204ENST00000377349 ARHGEF11O15085 1522 aa35.22■■■■□ 3.23
CBWD3-204ENST00000377349 RAD54L2Q9Y4B4 1467 aa35.16■■■■□ 3.22
CBWD3-204ENST00000377349 CUX1P39880 1505 aa35.07■■■■□ 3.2
CBWD3-204ENST00000377349 FGD5Q6ZNL6 1462 aa35.07■■■■□ 3.2
CBWD3-204ENST00000377349 SOGA1O94964 1423 aa35.06■■■■□ 3.2
CBWD3-204ENST00000377349 TDRD9Q8NDG6 1382 aaKnown RBP35.02■■■■□ 3.2
CBWD3-204ENST00000377349 WDR97A6NE52 1622 aa35.02■■■■□ 3.2
CBWD3-204ENST00000377349 SNAPC4Q5SXM2 1469 aa34.92■■■■□ 3.18
CBWD3-204ENST00000377349 FBLN2P98095 1184 aa34.91■■■■□ 3.18
CBWD3-204ENST00000377349 ARAP1Q96P48 1450 aa34.89■■■■□ 3.18
CBWD3-204ENST00000377349 CYB5RLQ6IPT4 315 aa34.84■■■■□ 3.17
CBWD3-204ENST00000377349 CLASP1Q7Z460 1538 aa34.83■■■■□ 3.17
CBWD3-204ENST00000377349 MAGI1Q96QZ7 1491 aaPredicted RBP34.83■■■■□ 3.17
CBWD3-204ENST00000377349 GRIN2BQ13224 1484 aa34.8■■■■□ 3.16
CBWD3-204ENST00000377349 PBRM1Q86U86 1689 aa34.79■■■■□ 3.16
CBWD3-204ENST00000377349 SYNJ1O43426 1573 aa34.72■■■■□ 3.15
CBWD3-204ENST00000377349 SYNJ2O15056 1496 aa34.7■■■■□ 3.15
CBWD3-204ENST00000377349 ABCA5Q8WWZ7 1642 aa34.69■■■■□ 3.14
CBWD3-204ENST00000377349 SUPT5HO00267 1087 aaKnown RBP34.69■■■■□ 3.14
CBWD3-204ENST00000377349 ABCA10Q8WWZ4 1543 aa34.67■■■■□ 3.14
CBWD3-204ENST00000377349 GAPVD1Q14C86 1478 aa34.67■■■■□ 3.14
CBWD3-204ENST00000377349 CHMP7Q8WUX9 453 aaPredicted RBP34.67■■■■□ 3.14
CBWD3-204ENST00000377349 BIVM-ERCC5R4GMW8 1640 aa34.54■■■■□ 3.12
CBWD3-204ENST00000377349 TOP2BQ02880 1626 aa34.5■■■■□ 3.11
CBWD3-204ENST00000377349 WRNQ14191 1432 aaPredicted RBP eCLIP34.45■■■■□ 3.11
CBWD3-204ENST00000377349 ADAMTS12P58397 1594 aa34.41■■■■□ 3.1
CBWD3-204ENST00000377349 TRHP20396 242 aaPredicted RBP34.4■■■■□ 3.1
CBWD3-204ENST00000377349 GRIN2AQ12879 1464 aa34.38■■■■□ 3.09
CBWD3-204ENST00000377349 CEP170Q5SW79 1584 aa34.32■■■■□ 3.08
CBWD3-204ENST00000377349 ERCC6L2Q5T890 1561 aa34.3■■■■□ 3.08
CBWD3-204ENST00000377349 NUP160Q12769 1436 aa34.29■■■■□ 3.08
CBWD3-204ENST00000377349 ERICH3Q5RHP9 1530 aa34.24■■■■□ 3.07
CBWD3-204ENST00000377349 FHAD1B1AJZ9 1412 aa34.22■■■■□ 3.07
CBWD3-204ENST00000377349 SHROOM2Q13796 1616 aa34.22■■■■□ 3.07
CBWD3-204ENST00000377349 RUSC2Q8N2Y8 1516 aa33.94■■■■□ 3.02
CBWD3-204ENST00000377349 PRG4Q92954 1404 aaPredicted RBP33.9■■■■□ 3.02
CBWD3-204ENST00000377349 JPH4Q96JJ6 628 aa33.83■■■■□ 3.01
CBWD3-204ENST00000377349 KIF13AQ9H1H9 1805 aa33.83■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms