RNA–Protein interactions for RNA: ENST00000376643.6

HDAC6-204, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 907 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-204ENST00000376643 NISCHQ9Y2I1 1504 aa36.68■■■■□ 3.46
HDAC6-204ENST00000376643 CCDC180Q9P1Z9 1646 aa32.95■■■□□ 2.86
HDAC6-204ENST00000376643 ABCC9O60706 1549 aa32.74■■■□□ 2.83
HDAC6-204ENST00000376643 RB1CC1Q8TDY2 1594 aa31.34■■■□□ 2.61
HDAC6-204ENST00000376643 NACADO15069 1562 aa31.16■■■□□ 2.58
HDAC6-204ENST00000376643 DCAF8L2P0C7V8 631 aa30.89■■■□□ 2.54
HDAC6-204ENST00000376643 MYO15BQ96JP2 1530 aa30.8■■■□□ 2.52
HDAC6-204ENST00000376643 DNAJC5BQ9UF47 199 aa30.51■■■□□ 2.47
HDAC6-204ENST00000376643 PABPN1Q86U42 306 aaKnown RBP eCLIP30.46■■■□□ 2.47
HDAC6-204ENST00000376643 ZCCHC6Q5VYS8 1495 aaKnown RBP30.43■■■□□ 2.46
HDAC6-204ENST00000376643 UNC13AQ9UPW8 1703 aa30.42■■■□□ 2.46
HDAC6-204ENST00000376643 DCAF1Q9Y4B6 1507 aa30.41■■■□□ 2.46
HDAC6-204ENST00000376643 BICRAQ9NZM4 1560 aa30.25■■■□□ 2.43
HDAC6-204ENST00000376643 SHROOM4Q9ULL8 1493 aa30.15■■■□□ 2.42
HDAC6-204ENST00000376643 SCRIBQ14160 1630 aa29.91■■■□□ 2.38
HDAC6-204ENST00000376643 CC2D2AQ9P2K1 1620 aa29.6■■■□□ 2.33
HDAC6-204ENST00000376643 EIF4G1Q04637 1599 aaKnown RBP29.59■■■□□ 2.33
HDAC6-204ENST00000376643 CECR2Q9BXF3 1484 aa29.55■■■□□ 2.32
HDAC6-204ENST00000376643 NCAPD3P42695 1498 aa28.72■■■□□ 2.19
HDAC6-204ENST00000376643 SMARCA2P51531 1590 aa28.62■■■□□ 2.17
HDAC6-204ENST00000376643 ATAD2BQ9ULI0 1458 aa28.61■■■□□ 2.17
HDAC6-204ENST00000376643 SMARCA4P51532 1647 aa28.58■■■□□ 2.17
HDAC6-204ENST00000376643 BAZ1AQ9NRL2 1556 aaPredicted RBP28.54■■■□□ 2.16
HDAC6-204ENST00000376643 HMGXB3Q12766 1538 aa28.54■■■□□ 2.16
HDAC6-204ENST00000376643 ERCC6Q03468 1493 aa28.39■■■□□ 2.13
HDAC6-204ENST00000376643 BAZ1BQ9UIG0 1483 aaKnown RBP28.38■■■□□ 2.13
HDAC6-204ENST00000376643 PEG3Q9GZU2 1588 aa28.37■■■□□ 2.13
HDAC6-204ENST00000376643 CUX2O14529 1486 aa28.34■■■□□ 2.13
HDAC6-204ENST00000376643 MROH2BQ7Z745 1585 aa28.19■■■□□ 2.1
HDAC6-204ENST00000376643 DNAJC5Q9H3Z4 198 aa28.14■■■□□ 2.1
HDAC6-204ENST00000376643 LAMC3Q9Y6N6 1575 aa28.09■■■□□ 2.09
HDAC6-204ENST00000376643 NESP48681 1621 aa28.09■■■□□ 2.09
HDAC6-204ENST00000376643 PDS5BQ9NTI5 1447 aa27.97■■■□□ 2.07
HDAC6-204ENST00000376643 THOC2Q8NI27 1593 aaKnown RBP27.86■■■□□ 2.05
HDAC6-204ENST00000376643 CADPSQ9ULU8 1353 aa27.86■■■□□ 2.05
HDAC6-204ENST00000376643 WIZO95785 1651 aa27.83■■■□□ 2.05
HDAC6-204ENST00000376643 KIF21AQ7Z4S6 1674 aa27.75■■■□□ 2.03
HDAC6-204ENST00000376643 RSF1Q96T23 1441 aaPredicted RBP27.67■■■□□ 2.02
HDAC6-204ENST00000376643 MRC2Q9UBG0 1479 aa27.66■■■□□ 2.02
HDAC6-204ENST00000376643 TOP2AP11388 1531 aaKnown RBP27.61■■■□□ 2.01
HDAC6-204ENST00000376643 CEP164Q9UPV0 1460 aa27.58■■■□□ 2.01
HDAC6-204ENST00000376643 WDR62O43379 1518 aa27.57■■■□□ 2
HDAC6-204ENST00000376643 CFTRP13569 1480 aa27.54■■■□□ 2
HDAC6-204ENST00000376643 FANCD2Q9BXW9 1451 aa27.52■■■□□ 2
HDAC6-204ENST00000376643 PRDM2Q13029 1718 aa27.24■■□□□ 1.95
HDAC6-204ENST00000376643 CCDC88BA6NC98 1476 aa27.23■■□□□ 1.95
HDAC6-204ENST00000376643 URB2Q14146 1524 aaKnown RBP27.21■■□□□ 1.95
HDAC6-204ENST00000376643 ABCC8Q09428 1581 aa27.09■■□□□ 1.93
HDAC6-204ENST00000376643 IFT140Q96RY7 1462 aa27.05■■□□□ 1.92
HDAC6-204ENST00000376643 OSCARQ8IYS5 282 aa27.03■■□□□ 1.92
HDAC6-204ENST00000376643 TOPBP1Q92547 1522 aa26.99■■□□□ 1.91
HDAC6-204ENST00000376643 DNMBPQ6XZF7 1577 aa26.92■■□□□ 1.9
HDAC6-204ENST00000376643 TRIM41Q8WV44 630 aa26.89■■□□□ 1.9
HDAC6-204ENST00000376643 ZNF608Q9ULD9 1512 aaPredicted RBP26.84■■□□□ 1.89
HDAC6-204ENST00000376643 EIF4G3O43432 1585 aaKnown RBP26.75■■□□□ 1.87
HDAC6-204ENST00000376643 POLA1P09884 1462 aaPredicted RBP26.71■■□□□ 1.87
HDAC6-204ENST00000376643 TARBP1Q13395 1621 aaKnown RBP26.69■■□□□ 1.86
HDAC6-204ENST00000376643 AQRO60306 1485 aaKnown RBP eCLIP26.63■■□□□ 1.851e-14■■■■■ 33.6
HDAC6-204ENST00000376643 WDR97A6NE52 1622 aa26.62■■□□□ 1.85
HDAC6-204ENST00000376643 SOGA1O94964 1423 aa26.62■■□□□ 1.85
HDAC6-204ENST00000376643 RIMBP3CA6NJZ7 1639 aa26.56■■□□□ 1.84
HDAC6-204ENST00000376643 RIMBP3BA6NNM3 1639 aa26.56■■□□□ 1.84
HDAC6-204ENST00000376643 RIMBP3Q9UFD9 1639 aa26.56■■□□□ 1.84
HDAC6-204ENST00000376643 FGD5Q6ZNL6 1462 aa26.55■■□□□ 1.84
HDAC6-204ENST00000376643 RAD54L2Q9Y4B4 1467 aa26.55■■□□□ 1.84
HDAC6-204ENST00000376643 ARHGEF11O15085 1522 aa26.54■■□□□ 1.84
HDAC6-204ENST00000376643 FBLN2P98095 1184 aa26.5■■□□□ 1.83
HDAC6-204ENST00000376643 CUX1P39880 1505 aa26.49■■□□□ 1.83
HDAC6-204ENST00000376643 TDRD9Q8NDG6 1382 aaKnown RBP26.49■■□□□ 1.83
HDAC6-204ENST00000376643 CHD1O14646 1710 aa26.49■■□□□ 1.83
HDAC6-204ENST00000376643 SUPT5HO00267 1087 aaKnown RBP26.48■■□□□ 1.83
HDAC6-204ENST00000376643 MAGI1Q96QZ7 1491 aaPredicted RBP26.43■■□□□ 1.82
HDAC6-204ENST00000376643 GRIN2BQ13224 1484 aa26.42■■□□□ 1.82
HDAC6-204ENST00000376643 SNAPC4Q5SXM2 1469 aa26.41■■□□□ 1.82
HDAC6-204ENST00000376643 CHMP7Q8WUX9 453 aaPredicted RBP26.38■■□□□ 1.81
HDAC6-204ENST00000376643 SYNJ1O43426 1573 aa26.33■■□□□ 1.81
HDAC6-204ENST00000376643 SYNJ2O15056 1496 aa26.32■■□□□ 1.8
HDAC6-204ENST00000376643 CYB5RLQ6IPT4 315 aa26.32■■□□□ 1.8
HDAC6-204ENST00000376643 GAPVD1Q14C86 1478 aa26.3■■□□□ 1.8
HDAC6-204ENST00000376643 ABCA10Q8WWZ4 1543 aa26.3■■□□□ 1.8
HDAC6-204ENST00000376643 WRNQ14191 1432 aaPredicted RBP eCLIP26.26■■□□□ 1.79
HDAC6-204ENST00000376643 CLASP1Q7Z460 1538 aa26.25■■□□□ 1.79
HDAC6-204ENST00000376643 ARAP1Q96P48 1450 aa26.24■■□□□ 1.79
HDAC6-204ENST00000376643 PBRM1Q86U86 1689 aa26.22■■□□□ 1.79
HDAC6-204ENST00000376643 ABCA5Q8WWZ7 1642 aa26.21■■□□□ 1.79
HDAC6-204ENST00000376643 TOP2BQ02880 1626 aa26.16■■□□□ 1.78
HDAC6-204ENST00000376643 BIVM-ERCC5R4GMW8 1640 aa26.14■■□□□ 1.78
HDAC6-204ENST00000376643 GRIN2AQ12879 1464 aa26.04■■□□□ 1.76
HDAC6-204ENST00000376643 TRHP20396 242 aaPredicted RBP26.04■■□□□ 1.76
HDAC6-204ENST00000376643 ADAMTS12P58397 1594 aa26.02■■□□□ 1.76
HDAC6-204ENST00000376643 FHAD1B1AJZ9 1412 aa26.01■■□□□ 1.75
HDAC6-204ENST00000376643 ERICH3Q5RHP9 1530 aa26.01■■□□□ 1.75
HDAC6-204ENST00000376643 NUP160Q12769 1436 aa25.96■■□□□ 1.75
HDAC6-204ENST00000376643 CEP170Q5SW79 1584 aa25.87■■□□□ 1.73
HDAC6-204ENST00000376643 SHROOM2Q13796 1616 aa25.8■■□□□ 1.72
HDAC6-204ENST00000376643 KIF27Q86VH2 1401 aa25.73■■□□□ 1.71
HDAC6-204ENST00000376643 ERCC6L2Q5T890 1561 aa25.72■■□□□ 1.71
HDAC6-204ENST00000376643 JPH4Q96JJ6 628 aa25.69■■□□□ 1.7
HDAC6-204ENST00000376643 PRG4Q92954 1404 aaPredicted RBP25.69■■□□□ 1.7
HDAC6-204ENST00000376643 CUL7Q14999 1698 aa25.64■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms