RNA–Protein interactions for RNA: ENST00000376610.6

HDAC6-202, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 736 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-202ENST00000376610 NISCHQ9Y2I1 1504 aa46.1■■■■■ 4.97
HDAC6-202ENST00000376610 CCDC180Q9P1Z9 1646 aa41.4■■■■■ 4.22
HDAC6-202ENST00000376610 ABCC9O60706 1549 aa41.32■■■■■ 4.2
HDAC6-202ENST00000376610 RB1CC1Q8TDY2 1594 aa39.41■■■■□ 3.9
HDAC6-202ENST00000376610 NACADO15069 1562 aa39.12■■■■□ 3.85
HDAC6-202ENST00000376610 DCAF8L2P0C7V8 631 aa38.97■■■■□ 3.83
HDAC6-202ENST00000376610 DNAJC5BQ9UF47 199 aa38.61■■■■□ 3.77
HDAC6-202ENST00000376610 MYO15BQ96JP2 1530 aa38.58■■■■□ 3.77
HDAC6-202ENST00000376610 PABPN1Q86U42 306 aaKnown RBP eCLIP38.45■■■■□ 3.75
HDAC6-202ENST00000376610 UNC13AQ9UPW8 1703 aa38.45■■■■□ 3.75
HDAC6-202ENST00000376610 ZCCHC6Q5VYS8 1495 aaKnown RBP38.22■■■■□ 3.71
HDAC6-202ENST00000376610 BICRAQ9NZM4 1560 aa38.14■■■■□ 3.7
HDAC6-202ENST00000376610 DCAF1Q9Y4B6 1507 aa38.11■■■■□ 3.69
HDAC6-202ENST00000376610 SHROOM4Q9ULL8 1493 aa37.76■■■■□ 3.63
HDAC6-202ENST00000376610 SCRIBQ14160 1630 aa37.71■■■■□ 3.63
HDAC6-202ENST00000376610 CC2D2AQ9P2K1 1620 aa37.33■■■■□ 3.57
HDAC6-202ENST00000376610 EIF4G1Q04637 1599 aaKnown RBP37.26■■■■□ 3.56
HDAC6-202ENST00000376610 CECR2Q9BXF3 1484 aa37.24■■■■□ 3.55
HDAC6-202ENST00000376610 NCAPD3P42695 1498 aa36.08■■■■□ 3.37
HDAC6-202ENST00000376610 ATAD2BQ9ULI0 1458 aa35.97■■■■□ 3.35
HDAC6-202ENST00000376610 SMARCA4P51532 1647 aa35.97■■■■□ 3.35
HDAC6-202ENST00000376610 SMARCA2P51531 1590 aa35.94■■■■□ 3.34
HDAC6-202ENST00000376610 HMGXB3Q12766 1538 aa35.85■■■■□ 3.33
HDAC6-202ENST00000376610 BAZ1AQ9NRL2 1556 aaPredicted RBP35.83■■■■□ 3.33
HDAC6-202ENST00000376610 ERCC6Q03468 1493 aa35.75■■■■□ 3.31
HDAC6-202ENST00000376610 BAZ1BQ9UIG0 1483 aaKnown RBP35.68■■■■□ 3.3
HDAC6-202ENST00000376610 CUX2O14529 1486 aa35.63■■■■□ 3.29
HDAC6-202ENST00000376610 PEG3Q9GZU2 1588 aa35.61■■■■□ 3.29
HDAC6-202ENST00000376610 DNAJC5Q9H3Z4 198 aa35.51■■■■□ 3.28
HDAC6-202ENST00000376610 MROH2BQ7Z745 1585 aa35.49■■■■□ 3.27
HDAC6-202ENST00000376610 NESP48681 1621 aa35.47■■■■□ 3.27
HDAC6-202ENST00000376610 LAMC3Q9Y6N6 1575 aa35.3■■■■□ 3.24
HDAC6-202ENST00000376610 PDS5BQ9NTI5 1447 aa35.13■■■■□ 3.21
HDAC6-202ENST00000376610 THOC2Q8NI27 1593 aaKnown RBP35.13■■■■□ 3.21
HDAC6-202ENST00000376610 WIZO95785 1651 aa35.09■■■■□ 3.21
HDAC6-202ENST00000376610 KIF21AQ7Z4S6 1674 aa35.07■■■■□ 3.2
HDAC6-202ENST00000376610 CADPSQ9ULU8 1353 aa35■■■■□ 3.19
HDAC6-202ENST00000376610 MRC2Q9UBG0 1479 aa34.79■■■■□ 3.16
HDAC6-202ENST00000376610 RSF1Q96T23 1441 aaPredicted RBP34.79■■■■□ 3.16
HDAC6-202ENST00000376610 TOP2AP11388 1531 aaKnown RBP34.69■■■■□ 3.14
HDAC6-202ENST00000376610 WDR62O43379 1518 aa34.68■■■■□ 3.14
HDAC6-202ENST00000376610 CEP164Q9UPV0 1460 aa34.68■■■■□ 3.14
HDAC6-202ENST00000376610 FANCD2Q9BXW9 1451 aa34.61■■■■□ 3.13
HDAC6-202ENST00000376610 CFTRP13569 1480 aa34.6■■■■□ 3.13
HDAC6-202ENST00000376610 PRDM2Q13029 1718 aa34.33■■■■□ 3.09
HDAC6-202ENST00000376610 URB2Q14146 1524 aaKnown RBP34.29■■■■□ 3.08
HDAC6-202ENST00000376610 CCDC88BA6NC98 1476 aa34.26■■■■□ 3.07
HDAC6-202ENST00000376610 TRIM41Q8WV44 630 aa34.03■■■■□ 3.04
HDAC6-202ENST00000376610 OSCARQ8IYS5 282 aa34.02■■■■□ 3.04
HDAC6-202ENST00000376610 IFT140Q96RY7 1462 aa33.98■■■■□ 3.03
HDAC6-202ENST00000376610 TOPBP1Q92547 1522 aa33.95■■■■□ 3.03
HDAC6-202ENST00000376610 ABCC8Q09428 1581 aa33.95■■■■□ 3.03
HDAC6-202ENST00000376610 DNMBPQ6XZF7 1577 aa33.86■■■■□ 3.01
HDAC6-202ENST00000376610 ZNF608Q9ULD9 1512 aaPredicted RBP33.84■■■■□ 3.01
HDAC6-202ENST00000376610 EIF4G3O43432 1585 aaKnown RBP33.72■■■□□ 2.99
HDAC6-202ENST00000376610 TARBP1Q13395 1621 aaKnown RBP33.63■■■□□ 2.97
HDAC6-202ENST00000376610 POLA1P09884 1462 aaPredicted RBP33.61■■■□□ 2.97
HDAC6-202ENST00000376610 AQRO60306 1485 aaKnown RBP eCLIP33.57■■■□□ 2.971e-14■■■■■ 33.6
HDAC6-202ENST00000376610 RIMBP3CA6NJZ7 1639 aa33.53■■■□□ 2.96
HDAC6-202ENST00000376610 RIMBP3BA6NNM3 1639 aa33.53■■■□□ 2.96
HDAC6-202ENST00000376610 RIMBP3Q9UFD9 1639 aa33.53■■■□□ 2.96
HDAC6-202ENST00000376610 SOGA1O94964 1423 aa33.47■■■□□ 2.95
HDAC6-202ENST00000376610 CHD1O14646 1710 aa33.47■■■□□ 2.95
HDAC6-202ENST00000376610 RAD54L2Q9Y4B4 1467 aa33.46■■■□□ 2.95
HDAC6-202ENST00000376610 ARHGEF11O15085 1522 aa33.44■■■□□ 2.94
HDAC6-202ENST00000376610 FBLN2P98095 1184 aa33.42■■■□□ 2.94
HDAC6-202ENST00000376610 FGD5Q6ZNL6 1462 aa33.41■■■□□ 2.94
HDAC6-202ENST00000376610 TDRD9Q8NDG6 1382 aaKnown RBP33.38■■■□□ 2.93
HDAC6-202ENST00000376610 WDR97A6NE52 1622 aa33.37■■■□□ 2.93
HDAC6-202ENST00000376610 CUX1P39880 1505 aa33.35■■■□□ 2.93
HDAC6-202ENST00000376610 SUPT5HO00267 1087 aaKnown RBP33.34■■■□□ 2.93
HDAC6-202ENST00000376610 SNAPC4Q5SXM2 1469 aa33.25■■■□□ 2.91
HDAC6-202ENST00000376610 CYB5RLQ6IPT4 315 aa33.21■■■□□ 2.91
HDAC6-202ENST00000376610 MAGI1Q96QZ7 1491 aaPredicted RBP33.2■■■□□ 2.91
HDAC6-202ENST00000376610 GRIN2BQ13224 1484 aa33.19■■■□□ 2.9
HDAC6-202ENST00000376610 CHMP7Q8WUX9 453 aaPredicted RBP33.18■■■□□ 2.9
HDAC6-202ENST00000376610 SYNJ1O43426 1573 aa33.11■■■□□ 2.89
HDAC6-202ENST00000376610 ARAP1Q96P48 1450 aa33.09■■■□□ 2.89
HDAC6-202ENST00000376610 SYNJ2O15056 1496 aa33.08■■■□□ 2.89
HDAC6-202ENST00000376610 GAPVD1Q14C86 1478 aa33.07■■■□□ 2.88
HDAC6-202ENST00000376610 PBRM1Q86U86 1689 aa33.07■■■□□ 2.88
HDAC6-202ENST00000376610 CLASP1Q7Z460 1538 aa33.04■■■□□ 2.88
HDAC6-202ENST00000376610 ABCA10Q8WWZ4 1543 aa33.03■■■□□ 2.88
HDAC6-202ENST00000376610 ABCA5Q8WWZ7 1642 aa32.98■■■□□ 2.87
HDAC6-202ENST00000376610 WRNQ14191 1432 aaPredicted RBP eCLIP32.95■■■□□ 2.87
HDAC6-202ENST00000376610 TRHP20396 242 aaPredicted RBP32.88■■■□□ 2.85
HDAC6-202ENST00000376610 TOP2BQ02880 1626 aa32.88■■■□□ 2.85
HDAC6-202ENST00000376610 BIVM-ERCC5R4GMW8 1640 aa32.88■■■□□ 2.85
HDAC6-202ENST00000376610 GRIN2AQ12879 1464 aa32.75■■■□□ 2.83
HDAC6-202ENST00000376610 ADAMTS12P58397 1594 aa32.74■■■□□ 2.83
HDAC6-202ENST00000376610 FHAD1B1AJZ9 1412 aa32.66■■■□□ 2.82
HDAC6-202ENST00000376610 ERICH3Q5RHP9 1530 aa32.65■■■□□ 2.82
HDAC6-202ENST00000376610 NUP160Q12769 1436 aa32.61■■■□□ 2.81
HDAC6-202ENST00000376610 CEP170Q5SW79 1584 aa32.61■■■□□ 2.81
HDAC6-202ENST00000376610 ERCC6L2Q5T890 1561 aa32.49■■■□□ 2.79
HDAC6-202ENST00000376610 SHROOM2Q13796 1616 aa32.48■■■□□ 2.79
HDAC6-202ENST00000376610 PRG4Q92954 1404 aaPredicted RBP32.33■■■□□ 2.77
HDAC6-202ENST00000376610 JPH4Q96JJ6 628 aa32.3■■■□□ 2.76
HDAC6-202ENST00000376610 KIF27Q86VH2 1401 aa32.27■■■□□ 2.76
HDAC6-202ENST00000376610 RUSC2Q8N2Y8 1516 aa32.27■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms