RNA–Protein interactions for RNA: ENST00000376492.3

CLCN6-205, Transcript of chloride voltage-gated channel 6, humanhuman

TSL 1 (best)

Gene CLCN6, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-205ENST00000376492 NISCHQ9Y2I1 1504 aa33.33■■■□□ 2.93
CLCN6-205ENST00000376492 ABCC9O60706 1549 aa30.36■■■□□ 2.45
CLCN6-205ENST00000376492 CCDC180Q9P1Z9 1646 aa29.97■■■□□ 2.39
CLCN6-205ENST00000376492 DNAJC5BQ9UF47 199 aa28.74■■■□□ 2.19
CLCN6-205ENST00000376492 RB1CC1Q8TDY2 1594 aa28.69■■■□□ 2.18
CLCN6-205ENST00000376492 NACADO15069 1562 aa28.42■■■□□ 2.14
CLCN6-205ENST00000376492 DCAF8L2P0C7V8 631 aa28.27■■■□□ 2.12
CLCN6-205ENST00000376492 PABPN1Q86U42 306 aaKnown RBP eCLIP28.23■■■□□ 2.11
CLCN6-205ENST00000376492 UNC13AQ9UPW8 1703 aa28.02■■■□□ 2.08
CLCN6-205ENST00000376492 BICRAQ9NZM4 1560 aa27.92■■■□□ 2.06
CLCN6-205ENST00000376492 MYO15BQ96JP2 1530 aa27.92■■■□□ 2.06
CLCN6-205ENST00000376492 ZCCHC6Q5VYS8 1495 aaKnown RBP27.58■■■□□ 2.01
CLCN6-205ENST00000376492 DCAF1Q9Y4B6 1507 aa27.47■■□□□ 1.99
CLCN6-205ENST00000376492 SHROOM4Q9ULL8 1493 aa27.44■■□□□ 1.98
CLCN6-205ENST00000376492 SCRIBQ14160 1630 aa27.38■■□□□ 1.97
CLCN6-205ENST00000376492 CC2D2AQ9P2K1 1620 aa27.37■■□□□ 1.97
CLCN6-205ENST00000376492 CECR2Q9BXF3 1484 aa27.36■■□□□ 1.97
CLCN6-205ENST00000376492 EIF4G1Q04637 1599 aaKnown RBP27.25■■□□□ 1.95
CLCN6-205ENST00000376492 DNAJC5Q9H3Z4 198 aa26.54■■□□□ 1.84
CLCN6-205ENST00000376492 NCAPD3P42695 1498 aa26.26■■□□□ 1.79
CLCN6-205ENST00000376492 CUX2O14529 1486 aa26.23■■□□□ 1.79
CLCN6-205ENST00000376492 ERCC6Q03468 1493 aa26.2■■□□□ 1.78
CLCN6-205ENST00000376492 ATAD2BQ9ULI0 1458 aa26.17■■□□□ 1.78
CLCN6-205ENST00000376492 SMARCA4P51532 1647 aa26.06■■□□□ 1.76
CLCN6-205ENST00000376492 HMGXB3Q12766 1538 aa26.04■■□□□ 1.76
CLCN6-205ENST00000376492 SMARCA2P51531 1590 aa26.04■■□□□ 1.76
CLCN6-205ENST00000376492 NESP48681 1621 aa26.01■■□□□ 1.75
CLCN6-205ENST00000376492 BAZ1BQ9UIG0 1483 aaKnown RBP25.9■■□□□ 1.74
CLCN6-205ENST00000376492 BAZ1AQ9NRL2 1556 aaPredicted RBP25.86■■□□□ 1.73
CLCN6-205ENST00000376492 PEG3Q9GZU2 1588 aa25.78■■□□□ 1.72
CLCN6-205ENST00000376492 THOC2Q8NI27 1593 aaKnown RBP25.77■■□□□ 1.72
CLCN6-205ENST00000376492 MROH2BQ7Z745 1585 aa25.71■■□□□ 1.71
CLCN6-205ENST00000376492 LAMC3Q9Y6N6 1575 aa25.69■■□□□ 1.7
CLCN6-205ENST00000376492 KIF21AQ7Z4S6 1674 aa25.6■■□□□ 1.69
CLCN6-205ENST00000376492 PDS5BQ9NTI5 1447 aa25.57■■□□□ 1.68
CLCN6-205ENST00000376492 CADPSQ9ULU8 1353 aa25.46■■□□□ 1.67
CLCN6-205ENST00000376492 MRC2Q9UBG0 1479 aa25.4■■□□□ 1.66
CLCN6-205ENST00000376492 WIZO95785 1651 aa25.36■■□□□ 1.65
CLCN6-205ENST00000376492 WDR62O43379 1518 aa25.34■■□□□ 1.65
CLCN6-205ENST00000376492 TRIM41Q8WV44 630 aa25.31■■□□□ 1.64
CLCN6-205ENST00000376492 CEP164Q9UPV0 1460 aa25.24■■□□□ 1.63
CLCN6-205ENST00000376492 FANCD2Q9BXW9 1451 aa25.2■■□□□ 1.62
CLCN6-205ENST00000376492 CFTRP13569 1480 aa25.12■■□□□ 1.61
CLCN6-205ENST00000376492 RSF1Q96T23 1441 aaPredicted RBP25.06■■□□□ 1.6
CLCN6-205ENST00000376492 TOP2AP11388 1531 aaKnown RBP25.02■■□□□ 1.6
CLCN6-205ENST00000376492 URB2Q14146 1524 aaKnown RBP25.02■■□□□ 1.6
CLCN6-205ENST00000376492 OSCARQ8IYS5 282 aa24.96■■□□□ 1.59
CLCN6-205ENST00000376492 ZNF608Q9ULD9 1512 aaPredicted RBP24.78■■□□□ 1.56
CLCN6-205ENST00000376492 CCDC88BA6NC98 1476 aa24.76■■□□□ 1.55
CLCN6-205ENST00000376492 PRDM2Q13029 1718 aa24.75■■□□□ 1.55
CLCN6-205ENST00000376492 IFT140Q96RY7 1462 aa24.73■■□□□ 1.55
CLCN6-205ENST00000376492 RIMBP3CA6NJZ7 1639 aa24.71■■□□□ 1.55
CLCN6-205ENST00000376492 RIMBP3BA6NNM3 1639 aa24.71■■□□□ 1.55
CLCN6-205ENST00000376492 RIMBP3Q9UFD9 1639 aa24.71■■□□□ 1.55
CLCN6-205ENST00000376492 TOPBP1Q92547 1522 aa24.68■■□□□ 1.54
CLCN6-205ENST00000376492 ARHGEF11O15085 1522 aa24.61■■□□□ 1.53
CLCN6-205ENST00000376492 EIF4G3O43432 1585 aaKnown RBP24.59■■□□□ 1.53
CLCN6-205ENST00000376492 DNMBPQ6XZF7 1577 aa24.55■■□□□ 1.52
CLCN6-205ENST00000376492 ABCC8Q09428 1581 aa24.54■■□□□ 1.52
CLCN6-205ENST00000376492 AQRO60306 1485 aaKnown RBP eCLIP24.5■■□□□ 1.515e-7■■■■■ 32.8
CLCN6-205ENST00000376492 TARBP1Q13395 1621 aaKnown RBP24.47■■□□□ 1.51
CLCN6-205ENST00000376492 CYB5RLQ6IPT4 315 aa24.44■■□□□ 1.5
CLCN6-205ENST00000376492 CHD1O14646 1710 aa24.43■■□□□ 1.5
CLCN6-205ENST00000376492 POLA1P09884 1462 aaPredicted RBP24.42■■□□□ 1.5
CLCN6-205ENST00000376492 FBLN2P98095 1184 aa24.38■■□□□ 1.49
CLCN6-205ENST00000376492 ARAP1Q96P48 1450 aa24.38■■□□□ 1.49
CLCN6-205ENST00000376492 RAD54L2Q9Y4B4 1467 aa24.36■■□□□ 1.49
CLCN6-205ENST00000376492 TDRD9Q8NDG6 1382 aaKnown RBP24.3■■□□□ 1.48
CLCN6-205ENST00000376492 SOGA1O94964 1423 aa24.28■■□□□ 1.48
CLCN6-205ENST00000376492 TRHP20396 242 aaPredicted RBP24.25■■□□□ 1.47
CLCN6-205ENST00000376492 SNAPC4Q5SXM2 1469 aa24.25■■□□□ 1.47
CLCN6-205ENST00000376492 FGD5Q6ZNL6 1462 aa24.23■■□□□ 1.47
CLCN6-205ENST00000376492 CUX1P39880 1505 aa24.18■■□□□ 1.46
CLCN6-205ENST00000376492 CLASP1Q7Z460 1538 aa24.18■■□□□ 1.46
CLCN6-205ENST00000376492 WDR97A6NE52 1622 aa24.14■■□□□ 1.46
CLCN6-205ENST00000376492 MAGI1Q96QZ7 1491 aaPredicted RBP24.13■■□□□ 1.45
CLCN6-205ENST00000376492 CHMP7Q8WUX9 453 aaPredicted RBP24.12■■□□□ 1.45
CLCN6-205ENST00000376492 GRIN2BQ13224 1484 aa24.1■■□□□ 1.45
CLCN6-205ENST00000376492 SYNJ1O43426 1573 aa24.1■■□□□ 1.45
CLCN6-205ENST00000376492 SYNJ2O15056 1496 aa24.06■■□□□ 1.44
CLCN6-205ENST00000376492 GAPVD1Q14C86 1478 aa23.99■■□□□ 1.43
CLCN6-205ENST00000376492 PBRM1Q86U86 1689 aa23.96■■□□□ 1.43
CLCN6-205ENST00000376492 ABCA10Q8WWZ4 1543 aa23.92■■□□□ 1.42
CLCN6-205ENST00000376492 ABCA5Q8WWZ7 1642 aa23.92■■□□□ 1.42
CLCN6-205ENST00000376492 ERCC6L2Q5T890 1561 aa23.82■■□□□ 1.4
CLCN6-205ENST00000376492 GRIN2AQ12879 1464 aa23.81■■□□□ 1.4
CLCN6-205ENST00000376492 ADAMTS12P58397 1594 aa23.77■■□□□ 1.4
CLCN6-205ENST00000376492 WRNQ14191 1432 aaPredicted RBP eCLIP23.76■■□□□ 1.395e-6■■■■■ 46
CLCN6-205ENST00000376492 CEP170Q5SW79 1584 aa23.75■■□□□ 1.39
CLCN6-205ENST00000376492 SUPT5HO00267 1087 aaKnown RBP23.75■■□□□ 1.39
CLCN6-205ENST00000376492 NUP160Q12769 1436 aa23.74■■□□□ 1.39
CLCN6-205ENST00000376492 AEBP2Q6ZN18 517 aaPredicted RBP23.72■■□□□ 1.39
CLCN6-205ENST00000376492 FHAD1B1AJZ9 1412 aa23.67■■□□□ 1.38
CLCN6-205ENST00000376492 TOP2BQ02880 1626 aa23.66■■□□□ 1.38
CLCN6-205ENST00000376492 BIVM-ERCC5R4GMW8 1640 aa23.66■■□□□ 1.38
CLCN6-205ENST00000376492 SHROOM2Q13796 1616 aa23.64■■□□□ 1.38
CLCN6-205ENST00000376492 ERICH3Q5RHP9 1530 aa23.59■■□□□ 1.37
CLCN6-205ENST00000376492 PRG4Q92954 1404 aaPredicted RBP23.54■■□□□ 1.36
CLCN6-205ENST00000376492 JPH4Q96JJ6 628 aa23.47■■□□□ 1.35
CLCN6-205ENST00000376492 KIF13AQ9H1H9 1805 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms