RNA–Protein interactions for RNA: ENST00000376491.7

CLCN6-204, Transcript of chloride voltage-gated channel 6, humanhuman

TSL 1 (best)

Gene CLCN6, Length 927 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-204ENST00000376491 NISCHQ9Y2I1 1504 aa37.61■■■■□ 3.61
CLCN6-204ENST00000376491 ABCC9O60706 1549 aa33.79■■■■□ 3
CLCN6-204ENST00000376491 CCDC180Q9P1Z9 1646 aa33.75■■■□□ 2.99
CLCN6-204ENST00000376491 RB1CC1Q8TDY2 1594 aa32.11■■■□□ 2.73
CLCN6-204ENST00000376491 NACADO15069 1562 aa31.9■■■□□ 2.7
CLCN6-204ENST00000376491 DNAJC5BQ9UF47 199 aa31.76■■■□□ 2.67
CLCN6-204ENST00000376491 DCAF8L2P0C7V8 631 aa31.74■■■□□ 2.67
CLCN6-204ENST00000376491 UNC13AQ9UPW8 1703 aa31.47■■■□□ 2.63
CLCN6-204ENST00000376491 PABPN1Q86U42 306 aaKnown RBP eCLIP31.46■■■□□ 2.63
CLCN6-204ENST00000376491 MYO15BQ96JP2 1530 aa31.45■■■□□ 2.63
CLCN6-204ENST00000376491 BICRAQ9NZM4 1560 aa31.24■■■□□ 2.59
CLCN6-204ENST00000376491 ZCCHC6Q5VYS8 1495 aaKnown RBP31.18■■■□□ 2.58
CLCN6-204ENST00000376491 DCAF1Q9Y4B6 1507 aa31.05■■■□□ 2.56
CLCN6-204ENST00000376491 SCRIBQ14160 1630 aa30.76■■■□□ 2.52
CLCN6-204ENST00000376491 SHROOM4Q9ULL8 1493 aa30.73■■■□□ 2.51
CLCN6-204ENST00000376491 CC2D2AQ9P2K1 1620 aa30.52■■■□□ 2.48
CLCN6-204ENST00000376491 EIF4G1Q04637 1599 aaKnown RBP30.44■■■□□ 2.46
CLCN6-204ENST00000376491 CECR2Q9BXF3 1484 aa30.41■■■□□ 2.46
CLCN6-204ENST00000376491 NCAPD3P42695 1498 aa29.47■■■□□ 2.31
CLCN6-204ENST00000376491 ATAD2BQ9ULI0 1458 aa29.39■■■□□ 2.3
CLCN6-204ENST00000376491 SMARCA4P51532 1647 aa29.35■■■□□ 2.29
CLCN6-204ENST00000376491 SMARCA2P51531 1590 aa29.26■■■□□ 2.28
CLCN6-204ENST00000376491 HMGXB3Q12766 1538 aa29.23■■■□□ 2.27
CLCN6-204ENST00000376491 BAZ1AQ9NRL2 1556 aaPredicted RBP29.18■■■□□ 2.26
CLCN6-204ENST00000376491 DNAJC5Q9H3Z4 198 aa29.12■■■□□ 2.25
CLCN6-204ENST00000376491 ERCC6Q03468 1493 aa29.11■■■□□ 2.25
CLCN6-204ENST00000376491 CUX2O14529 1486 aa29.08■■■□□ 2.25
CLCN6-204ENST00000376491 BAZ1BQ9UIG0 1483 aaKnown RBP29.07■■■□□ 2.24
CLCN6-204ENST00000376491 PEG3Q9GZU2 1588 aa29.06■■■□□ 2.24
CLCN6-204ENST00000376491 NESP48681 1621 aa29.04■■■□□ 2.24
CLCN6-204ENST00000376491 MROH2BQ7Z745 1585 aa29.01■■■□□ 2.23
CLCN6-204ENST00000376491 LAMC3Q9Y6N6 1575 aa28.79■■■□□ 2.2
CLCN6-204ENST00000376491 THOC2Q8NI27 1593 aaKnown RBP28.73■■■□□ 2.19
CLCN6-204ENST00000376491 WIZO95785 1651 aa28.67■■■□□ 2.18
CLCN6-204ENST00000376491 KIF21AQ7Z4S6 1674 aa28.66■■■□□ 2.18
CLCN6-204ENST00000376491 PDS5BQ9NTI5 1447 aa28.6■■■□□ 2.17
CLCN6-204ENST00000376491 CADPSQ9ULU8 1353 aa28.56■■■□□ 2.16
CLCN6-204ENST00000376491 RSF1Q96T23 1441 aaPredicted RBP28.39■■■□□ 2.14
CLCN6-204ENST00000376491 MRC2Q9UBG0 1479 aa28.37■■■□□ 2.13
CLCN6-204ENST00000376491 WDR62O43379 1518 aa28.32■■■□□ 2.12
CLCN6-204ENST00000376491 TOP2AP11388 1531 aaKnown RBP28.27■■■□□ 2.12
CLCN6-204ENST00000376491 CEP164Q9UPV0 1460 aa28.25■■■□□ 2.11
CLCN6-204ENST00000376491 CFTRP13569 1480 aa28.24■■■□□ 2.11
CLCN6-204ENST00000376491 FANCD2Q9BXW9 1451 aa28.24■■■□□ 2.11
CLCN6-204ENST00000376491 URB2Q14146 1524 aaKnown RBP28.03■■■□□ 2.08
CLCN6-204ENST00000376491 PRDM2Q13029 1718 aa27.98■■■□□ 2.07
CLCN6-204ENST00000376491 CCDC88BA6NC98 1476 aa27.96■■■□□ 2.07
CLCN6-204ENST00000376491 TRIM41Q8WV44 630 aa27.82■■■□□ 2.04
CLCN6-204ENST00000376491 OSCARQ8IYS5 282 aa27.76■■■□□ 2.03
CLCN6-204ENST00000376491 TOPBP1Q92547 1522 aa27.72■■■□□ 2.03
CLCN6-204ENST00000376491 ZNF608Q9ULD9 1512 aaPredicted RBP27.7■■■□□ 2.02
CLCN6-204ENST00000376491 IFT140Q96RY7 1462 aa27.7■■■□□ 2.02
CLCN6-204ENST00000376491 ABCC8Q09428 1581 aa27.61■■■□□ 2.01
CLCN6-204ENST00000376491 DNMBPQ6XZF7 1577 aa27.6■■■□□ 2.01
CLCN6-204ENST00000376491 EIF4G3O43432 1585 aaKnown RBP27.52■■■□□ 2
CLCN6-204ENST00000376491 TARBP1Q13395 1621 aaKnown RBP27.48■■□□□ 1.99
CLCN6-204ENST00000376491 AQRO60306 1485 aaKnown RBP eCLIP27.44■■□□□ 1.986e-7■■■■■ 32.8
CLCN6-204ENST00000376491 RIMBP3CA6NJZ7 1639 aa27.43■■□□□ 1.98
CLCN6-204ENST00000376491 RIMBP3BA6NNM3 1639 aa27.43■■□□□ 1.98
CLCN6-204ENST00000376491 RIMBP3Q9UFD9 1639 aa27.43■■□□□ 1.98
CLCN6-204ENST00000376491 POLA1P09884 1462 aaPredicted RBP27.43■■□□□ 1.98
CLCN6-204ENST00000376491 RAD54L2Q9Y4B4 1467 aa27.35■■□□□ 1.97
CLCN6-204ENST00000376491 CHD1O14646 1710 aa27.34■■□□□ 1.97
CLCN6-204ENST00000376491 ARHGEF11O15085 1522 aa27.33■■□□□ 1.97
CLCN6-204ENST00000376491 SOGA1O94964 1423 aa27.3■■□□□ 1.96
CLCN6-204ENST00000376491 TDRD9Q8NDG6 1382 aaKnown RBP27.26■■□□□ 1.95
CLCN6-204ENST00000376491 FGD5Q6ZNL6 1462 aa27.25■■□□□ 1.95
CLCN6-204ENST00000376491 CUX1P39880 1505 aa27.25■■□□□ 1.95
CLCN6-204ENST00000376491 FBLN2P98095 1184 aa27.21■■□□□ 1.95
CLCN6-204ENST00000376491 WDR97A6NE52 1622 aa27.15■■□□□ 1.94
CLCN6-204ENST00000376491 SNAPC4Q5SXM2 1469 aa27.13■■□□□ 1.93
CLCN6-204ENST00000376491 CYB5RLQ6IPT4 315 aa27.13■■□□□ 1.93
CLCN6-204ENST00000376491 SUPT5HO00267 1087 aaKnown RBP27.11■■□□□ 1.93
CLCN6-204ENST00000376491 ARAP1Q96P48 1450 aa27.07■■□□□ 1.92
CLCN6-204ENST00000376491 GRIN2BQ13224 1484 aa27.05■■□□□ 1.92
CLCN6-204ENST00000376491 MAGI1Q96QZ7 1491 aaPredicted RBP27.05■■□□□ 1.92
CLCN6-204ENST00000376491 CLASP1Q7Z460 1538 aa27.01■■□□□ 1.91
CLCN6-204ENST00000376491 CHMP7Q8WUX9 453 aaPredicted RBP27.01■■□□□ 1.91
CLCN6-204ENST00000376491 PBRM1Q86U86 1689 aa26.97■■□□□ 1.91
CLCN6-204ENST00000376491 SYNJ2O15056 1496 aa26.96■■□□□ 1.91
CLCN6-204ENST00000376491 GAPVD1Q14C86 1478 aa26.96■■□□□ 1.91
CLCN6-204ENST00000376491 SYNJ1O43426 1573 aa26.96■■□□□ 1.91
CLCN6-204ENST00000376491 ABCA10Q8WWZ4 1543 aa26.95■■□□□ 1.9
CLCN6-204ENST00000376491 ABCA5Q8WWZ7 1642 aa26.91■■□□□ 1.9
CLCN6-204ENST00000376491 BIVM-ERCC5R4GMW8 1640 aa26.8■■□□□ 1.88
CLCN6-204ENST00000376491 TRHP20396 242 aaPredicted RBP26.8■■□□□ 1.88
CLCN6-204ENST00000376491 WRNQ14191 1432 aaPredicted RBP eCLIP26.8■■□□□ 1.885e-6■■■■■ 46
CLCN6-204ENST00000376491 TOP2BQ02880 1626 aa26.78■■□□□ 1.88
CLCN6-204ENST00000376491 GRIN2AQ12879 1464 aa26.71■■□□□ 1.87
CLCN6-204ENST00000376491 ADAMTS12P58397 1594 aa26.71■■□□□ 1.87
CLCN6-204ENST00000376491 CEP170Q5SW79 1584 aa26.64■■□□□ 1.86
CLCN6-204ENST00000376491 NUP160Q12769 1436 aa26.64■■□□□ 1.85
CLCN6-204ENST00000376491 ERCC6L2Q5T890 1561 aa26.63■■□□□ 1.85
CLCN6-204ENST00000376491 FHAD1B1AJZ9 1412 aa26.61■■□□□ 1.85
CLCN6-204ENST00000376491 ERICH3Q5RHP9 1530 aa26.59■■□□□ 1.85
CLCN6-204ENST00000376491 SHROOM2Q13796 1616 aa26.53■■□□□ 1.84
CLCN6-204ENST00000376491 JPH4Q96JJ6 628 aa26.36■■□□□ 1.81
CLCN6-204ENST00000376491 PRG4Q92954 1404 aaPredicted RBP26.36■■□□□ 1.81
CLCN6-204ENST00000376491 RUSC2Q8N2Y8 1516 aa26.32■■□□□ 1.8
CLCN6-204ENST00000376491 IGF1RP08069 1367 aa26.28■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms