RNA–Protein interactions for RNA: ENST00000376057.8

PDPN-202, Transcript of podoplanin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PDPN, Length 2,801 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-202ENST00000376057 NISCHQ9Y2I1 1504 aa25.47■■□□□ 1.67
PDPN-202ENST00000376057 CCDC180Q9P1Z9 1646 aa22.35■■□□□ 1.17
PDPN-202ENST00000376057 ZCCHC6Q5VYS8 1495 aaKnown RBP21.42■■□□□ 1.02
PDPN-202ENST00000376057 DCAF1Q9Y4B6 1507 aa21.24■□□□□ 0.99
PDPN-202ENST00000376057 MYO15BQ96JP2 1530 aa21.03■□□□□ 0.96
PDPN-202ENST00000376057 ABCC9O60706 1549 aa20.8■□□□□ 0.92
PDPN-202ENST00000376057 NACADO15069 1562 aa20.77■□□□□ 0.92
PDPN-202ENST00000376057 DCAF8L2P0C7V8 631 aa20.62■□□□□ 0.89
PDPN-202ENST00000376057 RB1CC1Q8TDY2 1594 aa20.54■□□□□ 0.88
PDPN-202ENST00000376057 SHROOM4Q9ULL8 1493 aa20.39■□□□□ 0.85
PDPN-202ENST00000376057 SCRIBQ14160 1630 aa20.28■□□□□ 0.84
PDPN-202ENST00000376057 UNC13AQ9UPW8 1703 aa20.11■□□□□ 0.81
PDPN-202ENST00000376057 BICRAQ9NZM4 1560 aa19.9■□□□□ 0.78
PDPN-202ENST00000376057 RSF1Q96T23 1441 aaPredicted RBP19.69■□□□□ 0.74
PDPN-202ENST00000376057 BAZ1AQ9NRL2 1556 aaPredicted RBP19.69■□□□□ 0.74
PDPN-202ENST00000376057 CECR2Q9BXF3 1484 aa19.66■□□□□ 0.74
PDPN-202ENST00000376057 SUPT5HO00267 1087 aaKnown RBP19.63■□□□□ 0.73
PDPN-202ENST00000376057 MROH2BQ7Z745 1585 aa19.59■□□□□ 0.73
PDPN-202ENST00000376057 SMARCA4P51532 1647 aa19.58■□□□□ 0.72
PDPN-202ENST00000376057 PABPN1Q86U42 306 aaKnown RBP eCLIP19.52■□□□□ 0.72
PDPN-202ENST00000376057 PEG3Q9GZU2 1588 aa19.47■□□□□ 0.71
PDPN-202ENST00000376057 WIZO95785 1651 aa19.42■□□□□ 0.7
PDPN-202ENST00000376057 TOP2AP11388 1531 aaKnown RBP19.33■□□□□ 0.68
PDPN-202ENST00000376057 SMARCA2P51531 1590 aa19.29■□□□□ 0.68
PDPN-202ENST00000376057 EIF4G1Q04637 1599 aaKnown RBP19.27■□□□□ 0.68
PDPN-202ENST00000376057 ATAD2BQ9ULI0 1458 aa19.23■□□□□ 0.67
PDPN-202ENST00000376057 HMGXB3Q12766 1538 aa19.15■□□□□ 0.66
PDPN-202ENST00000376057 NCAPD3P42695 1498 aa19.14■□□□□ 0.65
PDPN-202ENST00000376057 BAZ1BQ9UIG0 1483 aaKnown RBP19.09■□□□□ 0.65
PDPN-202ENST00000376057 CCDC88BA6NC98 1476 aa19.05■□□□□ 0.64
PDPN-202ENST00000376057 CHIC1Q5VXU3 224 aa18.96■□□□□ 0.63
PDPN-202ENST00000376057 CC2D2AQ9P2K1 1620 aa18.96■□□□□ 0.63
PDPN-202ENST00000376057 PRDM2Q13029 1718 aa18.69■□□□□ 0.58
PDPN-202ENST00000376057 CFTRP13569 1480 aa18.68■□□□□ 0.58
PDPN-202ENST00000376057 TRIM41Q8WV44 630 aa18.59■□□□□ 0.57
PDPN-202ENST00000376057 CADPSQ9ULU8 1353 aa18.57■□□□□ 0.56
PDPN-202ENST00000376057 ABCC8Q09428 1581 aa18.55■□□□□ 0.56
PDPN-202ENST00000376057 WRNQ14191 1432 aaPredicted RBP eCLIP18.52■□□□□ 0.56
PDPN-202ENST00000376057 LAMC3Q9Y6N6 1575 aa18.5■□□□□ 0.55
PDPN-202ENST00000376057 BIVM-ERCC5R4GMW8 1640 aa18.48■□□□□ 0.55
PDPN-202ENST00000376057 TOP2BQ02880 1626 aa18.47■□□□□ 0.55
PDPN-202ENST00000376057 SYNJ1O43426 1573 aa18.44■□□□□ 0.54
PDPN-202ENST00000376057 EEA1Q15075 1411 aa18.38■□□□□ 0.53
PDPN-202ENST00000376057 CUX1P39880 1505 aa18.34■□□□□ 0.53
PDPN-202ENST00000376057 FANCD2Q9BXW9 1451 aa18.33■□□□□ 0.53
PDPN-202ENST00000376057 DNAJC5BQ9UF47 199 aa18.31■□□□□ 0.52
PDPN-202ENST00000376057 PDS5BQ9NTI5 1447 aa18.28■□□□□ 0.52
PDPN-202ENST00000376057 NESP48681 1621 aa18.28■□□□□ 0.52
PDPN-202ENST00000376057 DNMBPQ6XZF7 1577 aa18.25■□□□□ 0.51
PDPN-202ENST00000376057 CEP164Q9UPV0 1460 aa18.23■□□□□ 0.51
PDPN-202ENST00000376057 SOGA1O94964 1423 aa18.2■□□□□ 0.5
PDPN-202ENST00000376057 KIF21AQ7Z4S6 1674 aa18.16■□□□□ 0.5
PDPN-202ENST00000376057 TOPBP1Q92547 1522 aa18.16■□□□□ 0.5
PDPN-202ENST00000376057 KIF21BO75037 1637 aa18.13■□□□□ 0.49
PDPN-202ENST00000376057 RUSC2Q8N2Y8 1516 aa18.12■□□□□ 0.49
PDPN-202ENST00000376057 FGD5Q6ZNL6 1462 aa18.11■□□□□ 0.49
PDPN-202ENST00000376057 URB2Q14146 1524 aaKnown RBP18.11■□□□□ 0.49
PDPN-202ENST00000376057 CSRNP3Q8WYN3 585 aa18.11■□□□□ 0.49
PDPN-202ENST00000376057 LOC105371045A0A1W2PR82 267 aa18.08■□□□□ 0.49
PDPN-202ENST00000376057 KIF27Q86VH2 1401 aa18.08■□□□□ 0.48
PDPN-202ENST00000376057 ABCA10Q8WWZ4 1543 aa18.06■□□□□ 0.48
PDPN-202ENST00000376057 FAM9AQ8IZU1 332 aaPredicted RBP18.05■□□□□ 0.48
PDPN-202ENST00000376057 POLA1P09884 1462 aaPredicted RBP18.05■□□□□ 0.48
PDPN-202ENST00000376057 MRC2Q9UBG0 1479 aa18.05■□□□□ 0.48
PDPN-202ENST00000376057 WDR97A6NE52 1622 aa18.04■□□□□ 0.48
PDPN-202ENST00000376057 ERICH3Q5RHP9 1530 aa18.03■□□□□ 0.48
PDPN-202ENST00000376057 GOLGA3Q08378 1498 aa18.02■□□□□ 0.48
PDPN-202ENST00000376057 WDR62O43379 1518 aa18.01■□□□□ 0.47
PDPN-202ENST00000376057 PRXQ9BXM0 1461 aa18■□□□□ 0.47
PDPN-202ENST00000376057 TNIKQ9UKE5 1360 aa17.99■□□□□ 0.47
PDPN-202ENST00000376057 CUX2O14529 1486 aa17.96■□□□□ 0.47
PDPN-202ENST00000376057 TARBP1Q13395 1621 aaKnown RBP17.95■□□□□ 0.46
PDPN-202ENST00000376057 THOC2Q8NI27 1593 aaKnown RBP17.93■□□□□ 0.46
PDPN-202ENST00000376057 ABCA5Q8WWZ7 1642 aa17.92■□□□□ 0.46
PDPN-202ENST00000376057 IGF1RP08069 1367 aa17.91■□□□□ 0.46
PDPN-202ENST00000376057 RAD54L2Q9Y4B4 1467 aa17.91■□□□□ 0.46
PDPN-202ENST00000376057 CUL7Q14999 1698 aa17.88■□□□□ 0.45
PDPN-202ENST00000376057 ERCC6Q03468 1493 aa17.87■□□□□ 0.45
PDPN-202ENST00000376057 RAPGEF2Q9Y4G8 1499 aa17.86■□□□□ 0.45
PDPN-202ENST00000376057 IFT140Q96RY7 1462 aa17.86■□□□□ 0.45
PDPN-202ENST00000376057 CEP162Q5TB80 1403 aa17.8■□□□□ 0.44
PDPN-202ENST00000376057 GAPVD1Q14C86 1478 aa17.79■□□□□ 0.44
PDPN-202ENST00000376057 CARMIL1Q5VZK9 1371 aa17.78■□□□□ 0.44
PDPN-202ENST00000376057 PBRM1Q86U86 1689 aa17.75■□□□□ 0.43
PDPN-202ENST00000376057 UBTFP17480 764 aaKnown RBP17.75■□□□□ 0.43
PDPN-202ENST00000376057 TDRD9Q8NDG6 1382 aaKnown RBP17.7■□□□□ 0.42
PDPN-202ENST00000376057 GRIN2BQ13224 1484 aa17.69■□□□□ 0.42
PDPN-202ENST00000376057 CLIP1P30622 1438 aa17.67■□□□□ 0.42
PDPN-202ENST00000376057 ADAMTS12P58397 1594 aa17.65■□□□□ 0.42
PDPN-202ENST00000376057 FHAD1B1AJZ9 1412 aa17.65■□□□□ 0.42
PDPN-202ENST00000376057 EIF4G3O43432 1585 aaKnown RBP17.65■□□□□ 0.42
PDPN-202ENST00000376057 CTTNBP2Q8WZ74 1663 aa17.64■□□□□ 0.42
PDPN-202ENST00000376057 EHMT2Q96KQ7 1210 aa17.64■□□□□ 0.41
PDPN-202ENST00000376057 AQRO60306 1485 aaKnown RBP eCLIP17.62■□□□□ 0.41
PDPN-202ENST00000376057 ZNF608Q9ULD9 1512 aaPredicted RBP17.62■□□□□ 0.41
PDPN-202ENST00000376057 MAGI1Q96QZ7 1491 aaPredicted RBP17.59■□□□□ 0.41
PDPN-202ENST00000376057 VPS8Q8N3P4 1428 aa17.57■□□□□ 0.4
PDPN-202ENST00000376057 EFCAB5A4FU69 1503 aa17.56■□□□□ 0.4
PDPN-202ENST00000376057 ARAP1Q96P48 1450 aa17.54■□□□□ 0.4
PDPN-202ENST00000376057 ARHGAP35Q9NRY4 1499 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms