RNA–Protein interactions for RNA: ENST00000374949.2

HLA-DQA1-202, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQA1, Length 1,060 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-202ENST00000374949 NISCHQ9Y2I1 1504 aa26.93■■□□□ 1.9
HLA-DQA1-202ENST00000374949 ABCC9O60706 1549 aa24.45■■□□□ 1.51
HLA-DQA1-202ENST00000374949 CCDC180Q9P1Z9 1646 aa24.3■■□□□ 1.48
HLA-DQA1-202ENST00000374949 RB1CC1Q8TDY2 1594 aa23.18■■□□□ 1.3
HLA-DQA1-202ENST00000374949 DNAJC5BQ9UF47 199 aa23.03■■□□□ 1.28
HLA-DQA1-202ENST00000374949 NACADO15069 1562 aa22.96■■□□□ 1.27
HLA-DQA1-202ENST00000374949 UNC13AQ9UPW8 1703 aa22.74■■□□□ 1.23
HLA-DQA1-202ENST00000374949 DCAF8L2P0C7V8 631 aa22.74■■□□□ 1.23
HLA-DQA1-202ENST00000374949 PABPN1Q86U42 306 aaKnown RBP eCLIP22.68■■□□□ 1.22
HLA-DQA1-202ENST00000374949 MYO15BQ96JP2 1530 aa22.55■■□□□ 1.2
HLA-DQA1-202ENST00000374949 BICRAQ9NZM4 1560 aa22.54■■□□□ 1.2
HLA-DQA1-202ENST00000374949 ZCCHC6Q5VYS8 1495 aaKnown RBP22.31■■□□□ 1.16
HLA-DQA1-202ENST00000374949 DCAF1Q9Y4B6 1507 aa22.21■■□□□ 1.15
HLA-DQA1-202ENST00000374949 SHROOM4Q9ULL8 1493 aa22.17■■□□□ 1.14
HLA-DQA1-202ENST00000374949 SCRIBQ14160 1630 aa22.17■■□□□ 1.14
HLA-DQA1-202ENST00000374949 CC2D2AQ9P2K1 1620 aa22.09■■□□□ 1.13
HLA-DQA1-202ENST00000374949 CECR2Q9BXF3 1484 aa22.03■■□□□ 1.12
HLA-DQA1-202ENST00000374949 EIF4G1Q04637 1599 aaKnown RBP21.99■■□□□ 1.11
HLA-DQA1-202ENST00000374949 DNAJC5Q9H3Z4 198 aa21.23■□□□□ 0.99
HLA-DQA1-202ENST00000374949 NCAPD3P42695 1498 aa21.16■□□□□ 0.98
HLA-DQA1-202ENST00000374949 ERCC6Q03468 1493 aa21.12■□□□□ 0.97
HLA-DQA1-202ENST00000374949 CUX2O14529 1486 aa21.11■□□□□ 0.97
HLA-DQA1-202ENST00000374949 ATAD2BQ9ULI0 1458 aa21.1■□□□□ 0.97
HLA-DQA1-202ENST00000374949 SMARCA4P51532 1647 aa21.09■□□□□ 0.97
HLA-DQA1-202ENST00000374949 HMGXB3Q12766 1538 aa21.05■□□□□ 0.96
HLA-DQA1-202ENST00000374949 SMARCA2P51531 1590 aa21.05■□□□□ 0.96
HLA-DQA1-202ENST00000374949 NESP48681 1621 aa20.96■□□□□ 0.95
HLA-DQA1-202ENST00000374949 BAZ1AQ9NRL2 1556 aaPredicted RBP20.93■□□□□ 0.94
HLA-DQA1-202ENST00000374949 BAZ1BQ9UIG0 1483 aaKnown RBP20.91■□□□□ 0.94
HLA-DQA1-202ENST00000374949 PEG3Q9GZU2 1588 aa20.85■□□□□ 0.93
HLA-DQA1-202ENST00000374949 THOC2Q8NI27 1593 aaKnown RBP20.83■□□□□ 0.92
HLA-DQA1-202ENST00000374949 MROH2BQ7Z745 1585 aa20.77■□□□□ 0.92
HLA-DQA1-202ENST00000374949 LAMC3Q9Y6N6 1575 aa20.76■□□□□ 0.91
HLA-DQA1-202ENST00000374949 KIF21AQ7Z4S6 1674 aa20.73■□□□□ 0.91
HLA-DQA1-202ENST00000374949 PDS5BQ9NTI5 1447 aa20.6■□□□□ 0.89
HLA-DQA1-202ENST00000374949 WIZO95785 1651 aa20.54■□□□□ 0.88
HLA-DQA1-202ENST00000374949 CADPSQ9ULU8 1353 aa20.5■□□□□ 0.87
HLA-DQA1-202ENST00000374949 MRC2Q9UBG0 1479 aa20.5■□□□□ 0.87
HLA-DQA1-202ENST00000374949 WDR62O43379 1518 aa20.47■□□□□ 0.87
HLA-DQA1-202ENST00000374949 CEP164Q9UPV0 1460 aa20.37■□□□□ 0.85
HLA-DQA1-202ENST00000374949 FANCD2Q9BXW9 1451 aa20.32■□□□□ 0.84
HLA-DQA1-202ENST00000374949 TRIM41Q8WV44 630 aa20.29■□□□□ 0.84
HLA-DQA1-202ENST00000374949 CFTRP13569 1480 aa20.26■□□□□ 0.83
HLA-DQA1-202ENST00000374949 TOP2AP11388 1531 aaKnown RBP20.26■□□□□ 0.83
HLA-DQA1-202ENST00000374949 RSF1Q96T23 1441 aaPredicted RBP20.24■□□□□ 0.83
HLA-DQA1-202ENST00000374949 URB2Q14146 1524 aaKnown RBP20.19■□□□□ 0.82
HLA-DQA1-202ENST00000374949 PRDM2Q13029 1718 aa20.15■□□□□ 0.82
HLA-DQA1-202ENST00000374949 OSCARQ8IYS5 282 aa20.03■□□□□ 0.8
HLA-DQA1-202ENST00000374949 CCDC88BA6NC98 1476 aa19.99■□□□□ 0.79
HLA-DQA1-202ENST00000374949 ZNF608Q9ULD9 1512 aaPredicted RBP19.97■□□□□ 0.79
HLA-DQA1-202ENST00000374949 IFT140Q96RY7 1462 aa19.95■□□□□ 0.78
HLA-DQA1-202ENST00000374949 RIMBP3CA6NJZ7 1639 aa19.94■□□□□ 0.78
HLA-DQA1-202ENST00000374949 RIMBP3BA6NNM3 1639 aa19.94■□□□□ 0.78
HLA-DQA1-202ENST00000374949 RIMBP3Q9UFD9 1639 aa19.94■□□□□ 0.78
HLA-DQA1-202ENST00000374949 TOPBP1Q92547 1522 aa19.93■□□□□ 0.78
HLA-DQA1-202ENST00000374949 EIF4G3O43432 1585 aaKnown RBP19.91■□□□□ 0.78
HLA-DQA1-202ENST00000374949 DNMBPQ6XZF7 1577 aa19.86■□□□□ 0.77
HLA-DQA1-202ENST00000374949 ARHGEF11O15085 1522 aa19.84■□□□□ 0.77
HLA-DQA1-202ENST00000374949 CHD1O14646 1710 aa19.8■□□□□ 0.76
HLA-DQA1-202ENST00000374949 ABCC8Q09428 1581 aa19.8■□□□□ 0.76
HLA-DQA1-202ENST00000374949 TARBP1Q13395 1621 aaKnown RBP19.79■□□□□ 0.76
HLA-DQA1-202ENST00000374949 AQRO60306 1485 aaKnown RBP eCLIP19.73■□□□□ 0.75
HLA-DQA1-202ENST00000374949 POLA1P09884 1462 aaPredicted RBP19.72■□□□□ 0.75
HLA-DQA1-202ENST00000374949 RAD54L2Q9Y4B4 1467 aa19.65■□□□□ 0.74
HLA-DQA1-202ENST00000374949 ARAP1Q96P48 1450 aa19.63■□□□□ 0.73
HLA-DQA1-202ENST00000374949 FBLN2P98095 1184 aa19.61■□□□□ 0.73
HLA-DQA1-202ENST00000374949 CYB5RLQ6IPT4 315 aa19.61■□□□□ 0.73
HLA-DQA1-202ENST00000374949 FGD5Q6ZNL6 1462 aa19.58■□□□□ 0.72
HLA-DQA1-202ENST00000374949 TDRD9Q8NDG6 1382 aaKnown RBP19.57■□□□□ 0.72
HLA-DQA1-202ENST00000374949 SNAPC4Q5SXM2 1469 aa19.57■□□□□ 0.72
HLA-DQA1-202ENST00000374949 SOGA1O94964 1423 aa19.57■□□□□ 0.72
HLA-DQA1-202ENST00000374949 WDR97A6NE52 1622 aa19.54■□□□□ 0.72
HLA-DQA1-202ENST00000374949 CUX1P39880 1505 aa19.53■□□□□ 0.72
HLA-DQA1-202ENST00000374949 CLASP1Q7Z460 1538 aa19.52■□□□□ 0.72
HLA-DQA1-202ENST00000374949 SYNJ1O43426 1573 aa19.48■□□□□ 0.71
HLA-DQA1-202ENST00000374949 MAGI1Q96QZ7 1491 aaPredicted RBP19.48■□□□□ 0.71
HLA-DQA1-202ENST00000374949 TRHP20396 242 aaPredicted RBP19.46■□□□□ 0.71
HLA-DQA1-202ENST00000374949 PBRM1Q86U86 1689 aa19.46■□□□□ 0.71
HLA-DQA1-202ENST00000374949 GRIN2BQ13224 1484 aa19.45■□□□□ 0.7
HLA-DQA1-202ENST00000374949 SYNJ2O15056 1496 aa19.41■□□□□ 0.7
HLA-DQA1-202ENST00000374949 CHMP7Q8WUX9 453 aaPredicted RBP19.41■□□□□ 0.7
HLA-DQA1-202ENST00000374949 ABCA5Q8WWZ7 1642 aa19.37■□□□□ 0.69
HLA-DQA1-202ENST00000374949 GAPVD1Q14C86 1478 aa19.35■□□□□ 0.69
HLA-DQA1-202ENST00000374949 ABCA10Q8WWZ4 1543 aa19.32■□□□□ 0.68
HLA-DQA1-202ENST00000374949 SUPT5HO00267 1087 aaKnown RBP19.28■□□□□ 0.68
HLA-DQA1-202ENST00000374949 ADAMTS12P58397 1594 aa19.24■□□□□ 0.67
HLA-DQA1-202ENST00000374949 ERCC6L2Q5T890 1561 aa19.23■□□□□ 0.67
HLA-DQA1-202ENST00000374949 GRIN2AQ12879 1464 aa19.22■□□□□ 0.67
HLA-DQA1-202ENST00000374949 CEP170Q5SW79 1584 aa19.2■□□□□ 0.66
HLA-DQA1-202ENST00000374949 BIVM-ERCC5R4GMW8 1640 aa19.2■□□□□ 0.66
HLA-DQA1-202ENST00000374949 WRNQ14191 1432 aaPredicted RBP eCLIP19.17■□□□□ 0.66
HLA-DQA1-202ENST00000374949 TOP2BQ02880 1626 aa19.17■□□□□ 0.66
HLA-DQA1-202ENST00000374949 NUP160Q12769 1436 aa19.15■□□□□ 0.66
HLA-DQA1-202ENST00000374949 SHROOM2Q13796 1616 aa19.13■□□□□ 0.65
HLA-DQA1-202ENST00000374949 FHAD1B1AJZ9 1412 aa19.09■□□□□ 0.65
HLA-DQA1-202ENST00000374949 ERICH3Q5RHP9 1530 aa19.07■□□□□ 0.64
HLA-DQA1-202ENST00000374949 AEBP2Q6ZN18 517 aaPredicted RBP19.01■□□□□ 0.63
HLA-DQA1-202ENST00000374949 KIF13AQ9H1H9 1805 aa19■□□□□ 0.63
HLA-DQA1-202ENST00000374949 RUSC2Q8N2Y8 1516 aa18.99■□□□□ 0.63
HLA-DQA1-202ENST00000374949 PRG4Q92954 1404 aaPredicted RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms