RNA–Protein interactions for RNA: ENST00000373645.3

SP140-202, Transcript of SP140 nuclear body protein, humanhuman

TSL 1 (best) BASIC

Gene SP140, Length 814 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-202ENST00000373645 AEBP2Q6ZN18 517 aaPredicted RBP20.23■□□□□ 0.83
SP140-202ENST00000373645 NISCHQ9Y2I1 1504 aa19.25■□□□□ 0.67
SP140-202ENST00000373645 CHIC1Q5VXU3 224 aa19.01■□□□□ 0.63
SP140-202ENST00000373645 ABCC9O60706 1549 aa17.64■□□□□ 0.41
SP140-202ENST00000373645 SENP3Q9H4L4 574 aaPredicted RBP17.45■□□□□ 0.38
SP140-202ENST00000373645 CCDC180Q9P1Z9 1646 aa17.33■□□□□ 0.37
SP140-202ENST00000373645 PHF23Q9BUL5 403 aaPredicted RBP17.08■□□□□ 0.32
SP140-202ENST00000373645 DNAJC5BQ9UF47 199 aa16.78■□□□□ 0.28
SP140-202ENST00000373645 RB1CC1Q8TDY2 1594 aa16.6■□□□□ 0.25
SP140-202ENST00000373645 NACADO15069 1562 aa16.43■□□□□ 0.22
SP140-202ENST00000373645 PABPN1Q86U42 306 aaKnown RBP eCLIP16.39■□□□□ 0.21
SP140-202ENST00000373645 DCAF8L2P0C7V8 631 aa16.33■□□□□ 0.2
SP140-202ENST00000373645 UNC13AQ9UPW8 1703 aa16.31■□□□□ 0.2
SP140-202ENST00000373645 FOXD1Q16676 465 aa16.27■□□□□ 0.2
SP140-202ENST00000373645 BICRAQ9NZM4 1560 aa16.21■□□□□ 0.19
SP140-202ENST00000373645 POTEDQ86YR6 584 aa16.13■□□□□ 0.17
SP140-202ENST00000373645 MYO15BQ96JP2 1530 aa16.1■□□□□ 0.17
SP140-202ENST00000373645 ZCCHC6Q5VYS8 1495 aaKnown RBP15.93■□□□□ 0.14
SP140-202ENST00000373645 CC2D2AQ9P2K1 1620 aa15.9■□□□□ 0.14
SP140-202ENST00000373645 CECR2Q9BXF3 1484 aa15.88■□□□□ 0.13
SP140-202ENST00000373645 SCRIBQ14160 1630 aa15.87■□□□□ 0.13
SP140-202ENST00000373645 SHROOM4Q9ULL8 1493 aa15.84■□□□□ 0.13
SP140-202ENST00000373645 DCAF1Q9Y4B6 1507 aa15.83■□□□□ 0.12
SP140-202ENST00000373645 EIF4G1Q04637 1599 aaKnown RBP15.8■□□□□ 0.12
SP140-202ENST00000373645 MSH5O43196 834 aa15.53■□□□□ 0.08
SP140-202ENST00000373645 DNAJC5Q9H3Z4 198 aa15.47■□□□□ 0.07
SP140-202ENST00000373645 CUX2O14529 1486 aa15.2■□□□□ 0.02
SP140-202ENST00000373645 NCAPD3P42695 1498 aa15.19■□□□□ 0.02
SP140-202ENST00000373645 ERCC6Q03468 1493 aa15.19■□□□□ 0.02
SP140-202ENST00000373645 ATAD2BQ9ULI0 1458 aa15.14■□□□□ 0.01
SP140-202ENST00000373645 PIAS4Q8N2W9 510 aaPredicted RBP15.13■□□□□ 0.01
SP140-202ENST00000373645 NESP48681 1621 aa15.12■□□□□ 0.01
SP140-202ENST00000373645 SMARCA4P51532 1647 aa15.08■□□□□ 0
SP140-202ENST00000373645 HMGXB3Q12766 1538 aa15.07■□□□□ 0
SP140-202ENST00000373645 SMARCA2P51531 1590 aa15.04■□□□□ -0
SP140-202ENST00000373645 THOC2Q8NI27 1593 aaKnown RBP14.98□□□□□ -0.01
SP140-202ENST00000373645 BAZ1BQ9UIG0 1483 aaKnown RBP14.97□□□□□ -0.01
SP140-202ENST00000373645 BAZ1AQ9NRL2 1556 aaPredicted RBP14.93□□□□□ -0.02
SP140-202ENST00000373645 PEG3Q9GZU2 1588 aa14.9□□□□□ -0.02
SP140-202ENST00000373645 KIF21AQ7Z4S6 1674 aa14.88□□□□□ -0.03
SP140-202ENST00000373645 MROH2BQ7Z745 1585 aa14.88□□□□□ -0.03
SP140-202ENST00000373645 LAMC3Q9Y6N6 1575 aa14.86□□□□□ -0.03
SP140-202ENST00000373645 PDS5BQ9NTI5 1447 aa14.76□□□□□ -0.05
SP140-202ENST00000373645 TRIM41Q8WV44 630 aa14.75□□□□□ -0.05
SP140-202ENST00000373645 CADPSQ9ULU8 1353 aa14.72□□□□□ -0.05
SP140-202ENST00000373645 MRC2Q9UBG0 1479 aa14.71□□□□□ -0.05
SP140-202ENST00000373645 PPP6R1Q9UPN7 881 aa14.71□□□□□ -0.05
SP140-202ENST00000373645 PLPPR3Q6T4P5 718 aa14.69□□□□□ -0.06
SP140-202ENST00000373645 WDR62O43379 1518 aa14.69□□□□□ -0.06
SP140-202ENST00000373645 WIZO95785 1651 aa14.68□□□□□ -0.06
SP140-202ENST00000373645 ADRA2BP18089 450 aa14.67□□□□□ -0.06
SP140-202ENST00000373645 CEP164Q9UPV0 1460 aa14.6□□□□□ -0.07
SP140-202ENST00000373645 FANCD2Q9BXW9 1451 aa14.58□□□□□ -0.08
SP140-202ENST00000373645 CFTRP13569 1480 aa14.52□□□□□ -0.08
SP140-202ENST00000373645 URB2Q14146 1524 aaKnown RBP14.51□□□□□ -0.09
SP140-202ENST00000373645 RSF1Q96T23 1441 aaPredicted RBP14.47□□□□□ -0.09
SP140-202ENST00000373645 OSCARQ8IYS5 282 aa14.45□□□□□ -0.1
SP140-202ENST00000373645 TOP2AP11388 1531 aaKnown RBP14.45□□□□□ -0.1
SP140-202ENST00000373645 ZNF608Q9ULD9 1512 aaPredicted RBP14.39□□□□□ -0.11
SP140-202ENST00000373645 RIMBP3CA6NJZ7 1639 aa14.37□□□□□ -0.11
SP140-202ENST00000373645 RIMBP3BA6NNM3 1639 aa14.37□□□□□ -0.11
SP140-202ENST00000373645 RIMBP3Q9UFD9 1639 aa14.37□□□□□ -0.11
SP140-202ENST00000373645 PRDM2Q13029 1718 aa14.33□□□□□ -0.12
SP140-202ENST00000373645 ARHGEF11O15085 1522 aa14.31□□□□□ -0.12
SP140-202ENST00000373645 CCDC88BA6NC98 1476 aa14.3□□□□□ -0.12
SP140-202ENST00000373645 IFT140Q96RY7 1462 aa14.3□□□□□ -0.12
SP140-202ENST00000373645 TOPBP1Q92547 1522 aa14.29□□□□□ -0.12
SP140-202ENST00000373645 EIF4G3O43432 1585 aaKnown RBP14.27□□□□□ -0.12
SP140-202ENST00000373645 CHD1O14646 1710 aa14.21□□□□□ -0.14
SP140-202ENST00000373645 AQRO60306 1485 aaKnown RBP eCLIP14.2□□□□□ -0.14
SP140-202ENST00000373645 DNMBPQ6XZF7 1577 aa14.2□□□□□ -0.14
SP140-202ENST00000373645 ARAP1Q96P48 1450 aa14.18□□□□□ -0.14
SP140-202ENST00000373645 CYB5RLQ6IPT4 315 aa14.18□□□□□ -0.14
SP140-202ENST00000373645 TARBP1Q13395 1621 aaKnown RBP14.18□□□□□ -0.14
SP140-202ENST00000373645 POLA1P09884 1462 aaPredicted RBP14.14□□□□□ -0.15
SP140-202ENST00000373645 ABCC8Q09428 1581 aa14.13□□□□□ -0.15
SP140-202ENST00000373645 RAD54L2Q9Y4B4 1467 aa14.12□□□□□ -0.15
SP140-202ENST00000373645 FBLN2P98095 1184 aa14.11□□□□□ -0.15
SP140-202ENST00000373645 TRHP20396 242 aaPredicted RBP14.08□□□□□ -0.16
SP140-202ENST00000373645 TDRD9Q8NDG6 1382 aaKnown RBP14.08□□□□□ -0.16
SP140-202ENST00000373645 SNAPC4Q5SXM2 1469 aa14.05□□□□□ -0.16
SP140-202ENST00000373645 CLASP1Q7Z460 1538 aa14.03□□□□□ -0.16
SP140-202ENST00000373645 FGD5Q6ZNL6 1462 aa14.02□□□□□ -0.16
SP140-202ENST00000373645 SOGA1O94964 1423 aa14.02□□□□□ -0.16
SP140-202ENST00000373645 CUX1P39880 1505 aa14□□□□□ -0.17
SP140-202ENST00000373645 MAGI1Q96QZ7 1491 aaPredicted RBP13.94□□□□□ -0.18
SP140-202ENST00000373645 SYNJ1O43426 1573 aa13.94□□□□□ -0.18
SP140-202ENST00000373645 CHMP7Q8WUX9 453 aaPredicted RBP13.93□□□□□ -0.18
SP140-202ENST00000373645 WDR97A6NE52 1622 aa13.93□□□□□ -0.18
SP140-202ENST00000373645 GRIN2BQ13224 1484 aa13.93□□□□□ -0.18
SP140-202ENST00000373645 SYNJ2O15056 1496 aa13.92□□□□□ -0.18
SP140-202ENST00000373645 PBRM1Q86U86 1689 aa13.88□□□□□ -0.19
SP140-202ENST00000373645 GAPVD1Q14C86 1478 aa13.87□□□□□ -0.19
SP140-202ENST00000373645 ERCC6L2Q5T890 1561 aa13.86□□□□□ -0.19
SP140-202ENST00000373645 ABCA5Q8WWZ7 1642 aa13.84□□□□□ -0.19
SP140-202ENST00000373645 ABCA10Q8WWZ4 1543 aa13.82□□□□□ -0.2
SP140-202ENST00000373645 CEP170Q5SW79 1584 aa13.78□□□□□ -0.2
SP140-202ENST00000373645 GRIN2AQ12879 1464 aa13.77□□□□□ -0.21
SP140-202ENST00000373645 ADAMTS12P58397 1594 aa13.76□□□□□ -0.21
SP140-202ENST00000373645 NUP160Q12769 1436 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms