RNA–Protein interactions for RNA: ENST00000373554.5

HDAC8-201, Transcript of histone deacetylase 8, humanhuman

TSL 2 BASIC

Gene HDAC8, Length 833 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC8-201ENST00000373554 NISCHQ9Y2I1 1504 aa29.18■■■□□ 2.26
HDAC8-201ENST00000373554 CCDC180Q9P1Z9 1646 aa25.99■■□□□ 1.75
HDAC8-201ENST00000373554 ABCC9O60706 1549 aa25.4■■□□□ 1.66
HDAC8-201ENST00000373554 RB1CC1Q8TDY2 1594 aa24.46■■□□□ 1.51
HDAC8-201ENST00000373554 NACADO15069 1562 aa24.42■■□□□ 1.5
HDAC8-201ENST00000373554 DCAF8L2P0C7V8 631 aa24.36■■□□□ 1.49
HDAC8-201ENST00000373554 ZCCHC6Q5VYS8 1495 aaKnown RBP24.32■■□□□ 1.48
HDAC8-201ENST00000373554 MYO15BQ96JP2 1530 aa24.26■■□□□ 1.47
HDAC8-201ENST00000373554 DCAF1Q9Y4B6 1507 aa24.15■■□□□ 1.46
HDAC8-201ENST00000373554 UNC13AQ9UPW8 1703 aa23.85■■□□□ 1.41
HDAC8-201ENST00000373554 SCRIBQ14160 1630 aa23.7■■□□□ 1.38
HDAC8-201ENST00000373554 PABPN1Q86U42 306 aaKnown RBP eCLIP23.69■■□□□ 1.38
HDAC8-201ENST00000373554 BICRAQ9NZM4 1560 aa23.66■■□□□ 1.38
HDAC8-201ENST00000373554 DNAJC5BQ9UF47 199 aa23.55■■□□□ 1.36
HDAC8-201ENST00000373554 SHROOM4Q9ULL8 1493 aa23.49■■□□□ 1.35
HDAC8-201ENST00000373554 EIF4G1Q04637 1599 aaKnown RBP23.07■■□□□ 1.28
HDAC8-201ENST00000373554 CC2D2AQ9P2K1 1620 aa22.97■■□□□ 1.27
HDAC8-201ENST00000373554 DNAJC5Q9H3Z4 198 aa22.85■■□□□ 1.25
HDAC8-201ENST00000373554 CECR2Q9BXF3 1484 aa22.83■■□□□ 1.25
HDAC8-201ENST00000373554 SMARCA4P51532 1647 aa22.65■■□□□ 1.22
HDAC8-201ENST00000373554 BAZ1AQ9NRL2 1556 aaPredicted RBP22.65■■□□□ 1.22
HDAC8-201ENST00000373554 SMARCA2P51531 1590 aa22.52■■□□□ 1.2
HDAC8-201ENST00000373554 ATAD2BQ9ULI0 1458 aa22.52■■□□□ 1.2
HDAC8-201ENST00000373554 NCAPD3P42695 1498 aa22.51■■□□□ 1.19
HDAC8-201ENST00000373554 MROH2BQ7Z745 1585 aa22.47■■□□□ 1.19
HDAC8-201ENST00000373554 PEG3Q9GZU2 1588 aa22.43■■□□□ 1.18
HDAC8-201ENST00000373554 HMGXB3Q12766 1538 aa22.42■■□□□ 1.18
HDAC8-201ENST00000373554 BAZ1BQ9UIG0 1483 aaKnown RBP22.36■■□□□ 1.17
HDAC8-201ENST00000373554 WIZO95785 1651 aa22.23■■□□□ 1.15
HDAC8-201ENST00000373554 RSF1Q96T23 1441 aaPredicted RBP22.21■■□□□ 1.15
HDAC8-201ENST00000373554 TOP2AP11388 1531 aaKnown RBP22.04■■□□□ 1.12
HDAC8-201ENST00000373554 NESP48681 1621 aa21.95■■□□□ 1.1
HDAC8-201ENST00000373554 LAMC3Q9Y6N6 1575 aa21.95■■□□□ 1.1
HDAC8-201ENST00000373554 ERCC6Q03468 1493 aa21.92■■□□□ 1.1
HDAC8-201ENST00000373554 CADPSQ9ULU8 1353 aa21.85■■□□□ 1.09
HDAC8-201ENST00000373554 PDS5BQ9NTI5 1447 aa21.8■■□□□ 1.08
HDAC8-201ENST00000373554 CCDC88BA6NC98 1476 aa21.74■■□□□ 1.07
HDAC8-201ENST00000373554 CFTRP13569 1480 aa21.72■■□□□ 1.07
HDAC8-201ENST00000373554 KIF21AQ7Z4S6 1674 aa21.72■■□□□ 1.07
HDAC8-201ENST00000373554 CUX2O14529 1486 aa21.68■■□□□ 1.06
HDAC8-201ENST00000373554 THOC2Q8NI27 1593 aaKnown RBP21.66■■□□□ 1.06
HDAC8-201ENST00000373554 SUPT5HO00267 1087 aaKnown RBP21.65■■□□□ 1.06
HDAC8-201ENST00000373554 FANCD2Q9BXW9 1451 aa21.62■■□□□ 1.05
HDAC8-201ENST00000373554 CEP164Q9UPV0 1460 aa21.61■■□□□ 1.05
HDAC8-201ENST00000373554 PRDM2Q13029 1718 aa21.58■■□□□ 1.05
HDAC8-201ENST00000373554 MRC2Q9UBG0 1479 aa21.57■■□□□ 1.04
HDAC8-201ENST00000373554 WDR62O43379 1518 aa21.5■■□□□ 1.03
HDAC8-201ENST00000373554 URB2Q14146 1524 aaKnown RBP21.38■■□□□ 1.01
HDAC8-201ENST00000373554 ABCC8Q09428 1581 aa21.28■■□□□ 1
HDAC8-201ENST00000373554 TOPBP1Q92547 1522 aa21.27■■□□□ 1
HDAC8-201ENST00000373554 DNMBPQ6XZF7 1577 aa21.26■□□□□ 0.99
HDAC8-201ENST00000373554 TRIM41Q8WV44 630 aa21.18■□□□□ 0.98
HDAC8-201ENST00000373554 IFT140Q96RY7 1462 aa21.14■□□□□ 0.98
HDAC8-201ENST00000373554 CUX1P39880 1505 aa21.09■□□□□ 0.97
HDAC8-201ENST00000373554 POLA1P09884 1462 aaPredicted RBP21.08■□□□□ 0.97
HDAC8-201ENST00000373554 FGD5Q6ZNL6 1462 aa21.04■□□□□ 0.96
HDAC8-201ENST00000373554 TARBP1Q13395 1621 aaKnown RBP21.03■□□□□ 0.96
HDAC8-201ENST00000373554 ZNF608Q9ULD9 1512 aaPredicted RBP21.02■□□□□ 0.96
HDAC8-201ENST00000373554 SOGA1O94964 1423 aa20.99■□□□□ 0.95
HDAC8-201ENST00000373554 EIF4G3O43432 1585 aaKnown RBP20.98■□□□□ 0.95
HDAC8-201ENST00000373554 WRNQ14191 1432 aaPredicted RBP eCLIP20.98■□□□□ 0.95
HDAC8-201ENST00000373554 RAD54L2Q9Y4B4 1467 aa20.97■□□□□ 0.95
HDAC8-201ENST00000373554 TOP2BQ02880 1626 aa20.93■□□□□ 0.94
HDAC8-201ENST00000373554 BIVM-ERCC5R4GMW8 1640 aa20.93■□□□□ 0.94
HDAC8-201ENST00000373554 SYNJ1O43426 1573 aa20.91■□□□□ 0.94
HDAC8-201ENST00000373554 WDR97A6NE52 1622 aa20.9■□□□□ 0.94
HDAC8-201ENST00000373554 AQRO60306 1485 aaKnown RBP eCLIP20.89■□□□□ 0.94
HDAC8-201ENST00000373554 TDRD9Q8NDG6 1382 aaKnown RBP20.86■□□□□ 0.93
HDAC8-201ENST00000373554 ABCA10Q8WWZ4 1543 aa20.83■□□□□ 0.93
HDAC8-201ENST00000373554 GRIN2BQ13224 1484 aa20.76■□□□□ 0.91
HDAC8-201ENST00000373554 ABCA5Q8WWZ7 1642 aa20.76■□□□□ 0.91
HDAC8-201ENST00000373554 GAPVD1Q14C86 1478 aa20.75■□□□□ 0.91
HDAC8-201ENST00000373554 OSCARQ8IYS5 282 aa20.74■□□□□ 0.91
HDAC8-201ENST00000373554 SNAPC4Q5SXM2 1469 aa20.74■□□□□ 0.91
HDAC8-201ENST00000373554 PBRM1Q86U86 1689 aa20.73■□□□□ 0.91
HDAC8-201ENST00000373554 MAGI1Q96QZ7 1491 aaPredicted RBP20.72■□□□□ 0.91
HDAC8-201ENST00000373554 CHD1O14646 1710 aa20.7■□□□□ 0.9
HDAC8-201ENST00000373554 FBLN2P98095 1184 aa20.66■□□□□ 0.9
HDAC8-201ENST00000373554 SYNJ2O15056 1496 aa20.63■□□□□ 0.89
HDAC8-201ENST00000373554 CHMP7Q8WUX9 453 aaPredicted RBP20.6■□□□□ 0.89
HDAC8-201ENST00000373554 ERICH3Q5RHP9 1530 aa20.59■□□□□ 0.89
HDAC8-201ENST00000373554 ADAMTS12P58397 1594 aa20.58■□□□□ 0.88
HDAC8-201ENST00000373554 KIF27Q86VH2 1401 aa20.54■□□□□ 0.88
HDAC8-201ENST00000373554 FHAD1B1AJZ9 1412 aa20.53■□□□□ 0.88
HDAC8-201ENST00000373554 GRIN2AQ12879 1464 aa20.5■□□□□ 0.87
HDAC8-201ENST00000373554 CLASP1Q7Z460 1538 aa20.48■□□□□ 0.87
HDAC8-201ENST00000373554 ARHGEF11O15085 1522 aa20.44■□□□□ 0.86
HDAC8-201ENST00000373554 RIMBP3CA6NJZ7 1639 aa20.43■□□□□ 0.86
HDAC8-201ENST00000373554 RIMBP3BA6NNM3 1639 aa20.43■□□□□ 0.86
HDAC8-201ENST00000373554 RIMBP3Q9UFD9 1639 aa20.43■□□□□ 0.86
HDAC8-201ENST00000373554 CUL7Q14999 1698 aa20.43■□□□□ 0.86
HDAC8-201ENST00000373554 AEBP2Q6ZN18 517 aaPredicted RBP20.42■□□□□ 0.86
HDAC8-201ENST00000373554 IGF1RP08069 1367 aa20.41■□□□□ 0.86
HDAC8-201ENST00000373554 CEP170Q5SW79 1584 aa20.39■□□□□ 0.85
HDAC8-201ENST00000373554 NUP160Q12769 1436 aa20.39■□□□□ 0.85
HDAC8-201ENST00000373554 CARMIL1Q5VZK9 1371 aa20.31■□□□□ 0.84
HDAC8-201ENST00000373554 RUSC2Q8N2Y8 1516 aa20.3■□□□□ 0.84
HDAC8-201ENST00000373554 ARAP1Q96P48 1450 aa20.26■□□□□ 0.83
HDAC8-201ENST00000373554 SHROOM2Q13796 1616 aa20.25■□□□□ 0.83
HDAC8-201ENST00000373554 CYB5RLQ6IPT4 315 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms