RNA–Protein interactions for RNA: ENST00000371820.3

COL5A1-202, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 2

Gene COL5A1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-202ENST00000371820 NISCHQ9Y2I1 1504 aa25.23■■□□□ 1.63
COL5A1-202ENST00000371820 CCDC180Q9P1Z9 1646 aa22.69■■□□□ 1.22
COL5A1-202ENST00000371820 ABCC9O60706 1549 aa22.64■■□□□ 1.21
COL5A1-202ENST00000371820 RB1CC1Q8TDY2 1594 aa21.57■■□□□ 1.04
COL5A1-202ENST00000371820 NACADO15069 1562 aa21.43■■□□□ 1.02
COL5A1-202ENST00000371820 DNAJC5BQ9UF47 199 aa21.22■□□□□ 0.99
COL5A1-202ENST00000371820 DCAF8L2P0C7V8 631 aa21.17■□□□□ 0.98
COL5A1-202ENST00000371820 MYO15BQ96JP2 1530 aa21.16■□□□□ 0.98
COL5A1-202ENST00000371820 UNC13AQ9UPW8 1703 aa21.1■□□□□ 0.97
COL5A1-202ENST00000371820 PABPN1Q86U42 306 aaKnown RBP eCLIP21.03■□□□□ 0.96
COL5A1-202ENST00000371820 BICRAQ9NZM4 1560 aa20.97■□□□□ 0.95
COL5A1-202ENST00000371820 ZCCHC6Q5VYS8 1495 aaKnown RBP20.94■□□□□ 0.94
COL5A1-202ENST00000371820 DCAF1Q9Y4B6 1507 aa20.87■□□□□ 0.93
COL5A1-202ENST00000371820 SHROOM4Q9ULL8 1493 aa20.71■□□□□ 0.91
COL5A1-202ENST00000371820 SCRIBQ14160 1630 aa20.64■□□□□ 0.89
COL5A1-202ENST00000371820 CC2D2AQ9P2K1 1620 aa20.48■□□□□ 0.87
COL5A1-202ENST00000371820 EIF4G1Q04637 1599 aaKnown RBP20.44■□□□□ 0.86
COL5A1-202ENST00000371820 CECR2Q9BXF3 1484 aa20.41■□□□□ 0.86
COL5A1-202ENST00000371820 NCAPD3P42695 1498 aa19.77■□□□□ 0.76
COL5A1-202ENST00000371820 ATAD2BQ9ULI0 1458 aa19.71■□□□□ 0.75
COL5A1-202ENST00000371820 SMARCA4P51532 1647 aa19.7■□□□□ 0.74
COL5A1-202ENST00000371820 SMARCA2P51531 1590 aa19.66■□□□□ 0.74
COL5A1-202ENST00000371820 HMGXB3Q12766 1538 aa19.66■□□□□ 0.74
COL5A1-202ENST00000371820 BAZ1AQ9NRL2 1556 aaPredicted RBP19.59■□□□□ 0.73
COL5A1-202ENST00000371820 CUX2O14529 1486 aa19.55■□□□□ 0.72
COL5A1-202ENST00000371820 ERCC6Q03468 1493 aa19.55■□□□□ 0.72
COL5A1-202ENST00000371820 PEG3Q9GZU2 1588 aa19.53■□□□□ 0.72
COL5A1-202ENST00000371820 DNAJC5Q9H3Z4 198 aa19.51■□□□□ 0.71
COL5A1-202ENST00000371820 BAZ1BQ9UIG0 1483 aaKnown RBP19.51■□□□□ 0.71
COL5A1-202ENST00000371820 NESP48681 1621 aa19.45■□□□□ 0.7
COL5A1-202ENST00000371820 MROH2BQ7Z745 1585 aa19.44■□□□□ 0.7
COL5A1-202ENST00000371820 LAMC3Q9Y6N6 1575 aa19.35■□□□□ 0.69
COL5A1-202ENST00000371820 THOC2Q8NI27 1593 aaKnown RBP19.32■□□□□ 0.68
COL5A1-202ENST00000371820 KIF21AQ7Z4S6 1674 aa19.23■□□□□ 0.67
COL5A1-202ENST00000371820 PDS5BQ9NTI5 1447 aa19.2■□□□□ 0.66
COL5A1-202ENST00000371820 WIZO95785 1651 aa19.2■□□□□ 0.66
COL5A1-202ENST00000371820 CADPSQ9ULU8 1353 aa19.15■□□□□ 0.66
COL5A1-202ENST00000371820 MRC2Q9UBG0 1479 aa19.06■□□□□ 0.64
COL5A1-202ENST00000371820 WDR62O43379 1518 aa19.04■□□□□ 0.64
COL5A1-202ENST00000371820 RSF1Q96T23 1441 aaPredicted RBP19.01■□□□□ 0.63
COL5A1-202ENST00000371820 TOP2AP11388 1531 aaKnown RBP18.98■□□□□ 0.63
COL5A1-202ENST00000371820 CEP164Q9UPV0 1460 aa18.97■□□□□ 0.63
COL5A1-202ENST00000371820 CFTRP13569 1480 aa18.95■□□□□ 0.62
COL5A1-202ENST00000371820 FANCD2Q9BXW9 1451 aa18.95■□□□□ 0.62
COL5A1-202ENST00000371820 URB2Q14146 1524 aaKnown RBP18.8■□□□□ 0.6
COL5A1-202ENST00000371820 PRDM2Q13029 1718 aa18.8■□□□□ 0.6
COL5A1-202ENST00000371820 CCDC88BA6NC98 1476 aa18.73■□□□□ 0.59
COL5A1-202ENST00000371820 TRIM41Q8WV44 630 aa18.61■□□□□ 0.57
COL5A1-202ENST00000371820 TOPBP1Q92547 1522 aa18.59■□□□□ 0.57
COL5A1-202ENST00000371820 IFT140Q96RY7 1462 aa18.59■□□□□ 0.57
COL5A1-202ENST00000371820 OSCARQ8IYS5 282 aa18.58■□□□□ 0.56
COL5A1-202ENST00000371820 ZNF608Q9ULD9 1512 aaPredicted RBP18.56■□□□□ 0.56
COL5A1-202ENST00000371820 ABCC8Q09428 1581 aa18.55■□□□□ 0.56
COL5A1-202ENST00000371820 DNMBPQ6XZF7 1577 aa18.54■□□□□ 0.56
COL5A1-202ENST00000371820 EIF4G3O43432 1585 aaKnown RBP18.49■□□□□ 0.55
COL5A1-202ENST00000371820 TARBP1Q13395 1621 aaKnown RBP18.45■□□□□ 0.54
COL5A1-202ENST00000371820 RIMBP3CA6NJZ7 1639 aa18.41■□□□□ 0.54
COL5A1-202ENST00000371820 RIMBP3BA6NNM3 1639 aa18.41■□□□□ 0.54
COL5A1-202ENST00000371820 RIMBP3Q9UFD9 1639 aa18.41■□□□□ 0.54
COL5A1-202ENST00000371820 POLA1P09884 1462 aaPredicted RBP18.4■□□□□ 0.54
COL5A1-202ENST00000371820 AQRO60306 1485 aaKnown RBP eCLIP18.37■□□□□ 0.53
COL5A1-202ENST00000371820 ARHGEF11O15085 1522 aa18.36■□□□□ 0.53
COL5A1-202ENST00000371820 CHD1O14646 1710 aa18.35■□□□□ 0.53
COL5A1-202ENST00000371820 SUPT5HO00267 1087 aaKnown RBP18.32■□□□□ 0.52
COL5A1-202ENST00000371820 RAD54L2Q9Y4B4 1467 aa18.31■□□□□ 0.52
COL5A1-202ENST00000371820 FGD5Q6ZNL6 1462 aa18.28■□□□□ 0.52
COL5A1-202ENST00000371820 WDR97A6NE52 1622 aa18.28■□□□□ 0.52
COL5A1-202ENST00000371820 SOGA1O94964 1423 aa18.28■□□□□ 0.52
COL5A1-202ENST00000371820 CUX1P39880 1505 aa18.28■□□□□ 0.52
COL5A1-202ENST00000371820 TDRD9Q8NDG6 1382 aaKnown RBP18.24■□□□□ 0.51
COL5A1-202ENST00000371820 SNAPC4Q5SXM2 1469 aa18.21■□□□□ 0.51
COL5A1-202ENST00000371820 FBLN2P98095 1184 aa18.2■□□□□ 0.5
COL5A1-202ENST00000371820 ARAP1Q96P48 1450 aa18.18■□□□□ 0.5
COL5A1-202ENST00000371820 MAGI1Q96QZ7 1491 aaPredicted RBP18.17■□□□□ 0.5
COL5A1-202ENST00000371820 GRIN2BQ13224 1484 aa18.15■□□□□ 0.5
COL5A1-202ENST00000371820 CLASP1Q7Z460 1538 aa18.15■□□□□ 0.5
COL5A1-202ENST00000371820 CYB5RLQ6IPT4 315 aa18.14■□□□□ 0.49
COL5A1-202ENST00000371820 SYNJ1O43426 1573 aa18.12■□□□□ 0.49
COL5A1-202ENST00000371820 SYNJ2O15056 1496 aa18.11■□□□□ 0.49
COL5A1-202ENST00000371820 PBRM1Q86U86 1689 aa18.11■□□□□ 0.49
COL5A1-202ENST00000371820 ABCA10Q8WWZ4 1543 aa18.08■□□□□ 0.49
COL5A1-202ENST00000371820 GAPVD1Q14C86 1478 aa18.08■□□□□ 0.49
COL5A1-202ENST00000371820 ABCA5Q8WWZ7 1642 aa18.08■□□□□ 0.48
COL5A1-202ENST00000371820 CHMP7Q8WUX9 453 aaPredicted RBP18.07■□□□□ 0.48
COL5A1-202ENST00000371820 BIVM-ERCC5R4GMW8 1640 aa17.99■□□□□ 0.47
COL5A1-202ENST00000371820 TOP2BQ02880 1626 aa17.98■□□□□ 0.47
COL5A1-202ENST00000371820 WRNQ14191 1432 aaPredicted RBP eCLIP17.98■□□□□ 0.47
COL5A1-202ENST00000371820 ADAMTS12P58397 1594 aa17.95■□□□□ 0.46
COL5A1-202ENST00000371820 TRHP20396 242 aaPredicted RBP17.93■□□□□ 0.46
COL5A1-202ENST00000371820 GRIN2AQ12879 1464 aa17.93■□□□□ 0.46
COL5A1-202ENST00000371820 NUP160Q12769 1436 aa17.88■□□□□ 0.45
COL5A1-202ENST00000371820 CEP170Q5SW79 1584 aa17.87■□□□□ 0.45
COL5A1-202ENST00000371820 FHAD1B1AJZ9 1412 aa17.86■□□□□ 0.45
COL5A1-202ENST00000371820 ERICH3Q5RHP9 1530 aa17.86■□□□□ 0.45
COL5A1-202ENST00000371820 ERCC6L2Q5T890 1561 aa17.84■□□□□ 0.45
COL5A1-202ENST00000371820 SHROOM2Q13796 1616 aa17.82■□□□□ 0.44
COL5A1-202ENST00000371820 RUSC2Q8N2Y8 1516 aa17.7■□□□□ 0.42
COL5A1-202ENST00000371820 PRG4Q92954 1404 aaPredicted RBP17.67■□□□□ 0.42
COL5A1-202ENST00000371820 JPH4Q96JJ6 628 aa17.62■□□□□ 0.41
COL5A1-202ENST00000371820 CUL7Q14999 1698 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 192.6 ms