RNA–Protein interactions for RNA: ENST00000371527.5

NKRF-202, Transcript of NFKB repressing factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NKRF, Length 3,741 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKRF-202ENST00000371527 NISCHQ9Y2I1 1504 aa12.04□□□□□ -0.48
NKRF-202ENST00000371527 CCDC180Q9P1Z9 1646 aa10.74□□□□□ -0.69
NKRF-202ENST00000371527 ABCC9O60706 1549 aa10.6□□□□□ -0.71
NKRF-202ENST00000371527 RB1CC1Q8TDY2 1594 aa10.16□□□□□ -0.78
NKRF-202ENST00000371527 NACADO15069 1562 aa10.14□□□□□ -0.79
NKRF-202ENST00000371527 MYO15BQ96JP2 1530 aa10.07□□□□□ -0.8
NKRF-202ENST00000371527 DCAF8L2P0C7V8 631 aa10.05□□□□□ -0.8
NKRF-202ENST00000371527 ZCCHC6Q5VYS8 1495 aaKnown RBP10.01□□□□□ -0.81
NKRF-202ENST00000371527 DCAF1Q9Y4B6 1507 aa9.98□□□□□ -0.81
NKRF-202ENST00000371527 PABPN1Q86U42 306 aaKnown RBP eCLIP9.9□□□□□ -0.83
NKRF-202ENST00000371527 UNC13AQ9UPW8 1703 aa9.89□□□□□ -0.83
NKRF-202ENST00000371527 BICRAQ9NZM4 1560 aa9.87□□□□□ -0.83
NKRF-202ENST00000371527 DNAJC5BQ9UF47 199 aa9.86□□□□□ -0.83
NKRF-202ENST00000371527 SHROOM4Q9ULL8 1493 aa9.78□□□□□ -0.84
NKRF-202ENST00000371527 SCRIBQ14160 1630 aa9.76□□□□□ -0.85
NKRF-202ENST00000371527 EIF4G1Q04637 1599 aaKnown RBP9.6□□□□□ -0.87
NKRF-202ENST00000371527 CC2D2AQ9P2K1 1620 aa9.58□□□□□ -0.88
NKRF-202ENST00000371527 CECR2Q9BXF3 1484 aa9.55□□□□□ -0.88
NKRF-202ENST00000371527 NCAPD3P42695 1498 aa9.37□□□□□ -0.91
NKRF-202ENST00000371527 ATAD2BQ9ULI0 1458 aa9.35□□□□□ -0.91
NKRF-202ENST00000371527 SMARCA4P51532 1647 aa9.35□□□□□ -0.91
NKRF-202ENST00000371527 BAZ1AQ9NRL2 1556 aaPredicted RBP9.33□□□□□ -0.92
NKRF-202ENST00000371527 SMARCA2P51531 1590 aa9.32□□□□□ -0.92
NKRF-202ENST00000371527 HMGXB3Q12766 1538 aa9.29□□□□□ -0.92
NKRF-202ENST00000371527 PEG3Q9GZU2 1588 aa9.29□□□□□ -0.92
NKRF-202ENST00000371527 MROH2BQ7Z745 1585 aa9.27□□□□□ -0.93
NKRF-202ENST00000371527 BAZ1BQ9UIG0 1483 aaKnown RBP9.24□□□□□ -0.93
NKRF-202ENST00000371527 WIZO95785 1651 aa9.14□□□□□ -0.95
NKRF-202ENST00000371527 NESP48681 1621 aa9.14□□□□□ -0.95
NKRF-202ENST00000371527 RSF1Q96T23 1441 aaPredicted RBP9.14□□□□□ -0.95
NKRF-202ENST00000371527 ERCC6Q03468 1493 aa9.13□□□□□ -0.95
NKRF-202ENST00000371527 CUX2O14529 1486 aa9.12□□□□□ -0.95
NKRF-202ENST00000371527 LAMC3Q9Y6N6 1575 aa9.11□□□□□ -0.95
NKRF-202ENST00000371527 CADPSQ9ULU8 1353 aa9.08□□□□□ -0.96
NKRF-202ENST00000371527 PDS5BQ9NTI5 1447 aa9.07□□□□□ -0.96
NKRF-202ENST00000371527 TOP2AP11388 1531 aaKnown RBP9.06□□□□□ -0.96
NKRF-202ENST00000371527 THOC2Q8NI27 1593 aaKnown RBP9.03□□□□□ -0.96
NKRF-202ENST00000371527 KIF21AQ7Z4S6 1674 aa9.01□□□□□ -0.97
NKRF-202ENST00000371527 CFTRP13569 1480 aa9.01□□□□□ -0.97
NKRF-202ENST00000371527 MRC2Q9UBG0 1479 aa8.98□□□□□ -0.97
NKRF-202ENST00000371527 DNAJC5Q9H3Z4 198 aa8.97□□□□□ -0.97
NKRF-202ENST00000371527 CCDC88BA6NC98 1476 aa8.96□□□□□ -0.97
NKRF-202ENST00000371527 FANCD2Q9BXW9 1451 aa8.96□□□□□ -0.98
NKRF-202ENST00000371527 CEP164Q9UPV0 1460 aa8.95□□□□□ -0.98
NKRF-202ENST00000371527 WDR62O43379 1518 aa8.95□□□□□ -0.98
NKRF-202ENST00000371527 URB2Q14146 1524 aaKnown RBP8.89□□□□□ -0.99
NKRF-202ENST00000371527 PRDM2Q13029 1718 aa8.88□□□□□ -0.99
NKRF-202ENST00000371527 ABCC8Q09428 1581 aa8.81□□□□□ -1
NKRF-202ENST00000371527 TOPBP1Q92547 1522 aa8.81□□□□□ -1
NKRF-202ENST00000371527 IFT140Q96RY7 1462 aa8.79□□□□□ -1
NKRF-202ENST00000371527 DNMBPQ6XZF7 1577 aa8.79□□□□□ -1
NKRF-202ENST00000371527 SUPT5HO00267 1087 aaKnown RBP8.78□□□□□ -1
NKRF-202ENST00000371527 ZNF608Q9ULD9 1512 aaPredicted RBP8.75□□□□□ -1.01
NKRF-202ENST00000371527 POLA1P09884 1462 aaPredicted RBP8.72□□□□□ -1.01
NKRF-202ENST00000371527 TARBP1Q13395 1621 aaKnown RBP8.72□□□□□ -1.01
NKRF-202ENST00000371527 OSCARQ8IYS5 282 aa8.71□□□□□ -1.01
NKRF-202ENST00000371527 CUX1P39880 1505 aa8.71□□□□□ -1.02
NKRF-202ENST00000371527 SOGA1O94964 1423 aa8.7□□□□□ -1.02
NKRF-202ENST00000371527 RAD54L2Q9Y4B4 1467 aa8.69□□□□□ -1.02
NKRF-202ENST00000371527 EIF4G3O43432 1585 aaKnown RBP8.68□□□□□ -1.02
NKRF-202ENST00000371527 FGD5Q6ZNL6 1462 aa8.68□□□□□ -1.02
NKRF-202ENST00000371527 AQRO60306 1485 aaKnown RBP eCLIP8.68□□□□□ -1.02
NKRF-202ENST00000371527 WDR97A6NE52 1622 aa8.66□□□□□ -1.02
NKRF-202ENST00000371527 TDRD9Q8NDG6 1382 aaKnown RBP8.65□□□□□ -1.02
NKRF-202ENST00000371527 ABCA10Q8WWZ4 1543 aa8.61□□□□□ -1.03
NKRF-202ENST00000371527 GRIN2BQ13224 1484 aa8.61□□□□□ -1.03
NKRF-202ENST00000371527 WRNQ14191 1432 aaPredicted RBP eCLIP8.6□□□□□ -1.03
NKRF-202ENST00000371527 SNAPC4Q5SXM2 1469 aa8.6□□□□□ -1.03
NKRF-202ENST00000371527 BIVM-ERCC5R4GMW8 1640 aa8.59□□□□□ -1.03
NKRF-202ENST00000371527 MAGI1Q96QZ7 1491 aaPredicted RBP8.59□□□□□ -1.03
NKRF-202ENST00000371527 TOP2BQ02880 1626 aa8.59□□□□□ -1.03
NKRF-202ENST00000371527 CHD1O14646 1710 aa8.58□□□□□ -1.04
NKRF-202ENST00000371527 GAPVD1Q14C86 1478 aa8.58□□□□□ -1.04
NKRF-202ENST00000371527 TRIM41Q8WV44 630 aa8.58□□□□□ -1.04
NKRF-202ENST00000371527 SYNJ1O43426 1573 aa8.58□□□□□ -1.04
NKRF-202ENST00000371527 ABCA5Q8WWZ7 1642 aa8.57□□□□□ -1.04
NKRF-202ENST00000371527 FBLN2P98095 1184 aa8.57□□□□□ -1.04
NKRF-202ENST00000371527 RIMBP3CA6NJZ7 1639 aa8.56□□□□□ -1.04
NKRF-202ENST00000371527 RIMBP3BA6NNM3 1639 aa8.56□□□□□ -1.04
NKRF-202ENST00000371527 RIMBP3Q9UFD9 1639 aa8.56□□□□□ -1.04
NKRF-202ENST00000371527 SYNJ2O15056 1496 aa8.56□□□□□ -1.04
NKRF-202ENST00000371527 ARHGEF11O15085 1522 aa8.55□□□□□ -1.04
NKRF-202ENST00000371527 CHMP7Q8WUX9 453 aaPredicted RBP8.55□□□□□ -1.04
NKRF-202ENST00000371527 PBRM1Q86U86 1689 aa8.54□□□□□ -1.04
NKRF-202ENST00000371527 CLASP1Q7Z460 1538 aa8.54□□□□□ -1.04
NKRF-202ENST00000371527 ERICH3Q5RHP9 1530 aa8.5□□□□□ -1.05
NKRF-202ENST00000371527 FHAD1B1AJZ9 1412 aa8.5□□□□□ -1.05
NKRF-202ENST00000371527 ADAMTS12P58397 1594 aa8.49□□□□□ -1.05
NKRF-202ENST00000371527 ARAP1Q96P48 1450 aa8.49□□□□□ -1.05
NKRF-202ENST00000371527 GRIN2AQ12879 1464 aa8.49□□□□□ -1.05
NKRF-202ENST00000371527 CYB5RLQ6IPT4 315 aa8.48□□□□□ -1.05
NKRF-202ENST00000371527 NUP160Q12769 1436 aa8.48□□□□□ -1.05
NKRF-202ENST00000371527 CEP170Q5SW79 1584 aa8.44□□□□□ -1.06
NKRF-202ENST00000371527 IGF1RP08069 1367 aa8.44□□□□□ -1.06
NKRF-202ENST00000371527 KIF27Q86VH2 1401 aa8.43□□□□□ -1.06
NKRF-202ENST00000371527 SHROOM2Q13796 1616 aa8.41□□□□□ -1.06
NKRF-202ENST00000371527 ERCC6L2Q5T890 1561 aa8.39□□□□□ -1.07
NKRF-202ENST00000371527 CUL7Q14999 1698 aa8.38□□□□□ -1.07
NKRF-202ENST00000371527 JPH4Q96JJ6 628 aa8.38□□□□□ -1.07
NKRF-202ENST00000371527 CARMIL1Q5VZK9 1371 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms