RNA–Protein interactions for RNA: ENST00000369746.2

UBE3D-202, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 2,740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-202ENST00000369746 NISCHQ9Y2I1 1504 aa11.64□□□□□ -0.55
UBE3D-202ENST00000369746 CCDC180Q9P1Z9 1646 aa11.09□□□□□ -0.63
UBE3D-202ENST00000369746 ABCC9O60706 1549 aa10.71□□□□□ -0.7
UBE3D-202ENST00000369746 SHROOM4Q9ULL8 1493 aa10.64□□□□□ -0.71
UBE3D-202ENST00000369746 RB1CC1Q8TDY2 1594 aa10.58□□□□□ -0.72
UBE3D-202ENST00000369746 MYO15BQ96JP2 1530 aa10.51□□□□□ -0.73
UBE3D-202ENST00000369746 NACADO15069 1562 aa10.5□□□□□ -0.73
UBE3D-202ENST00000369746 DNAJC5BQ9UF47 199 aa10.32□□□□□ -0.76
UBE3D-202ENST00000369746 DNAJC5Q9H3Z4 198 aa10.27□□□□□ -0.77
UBE3D-202ENST00000369746 UNC13AQ9UPW8 1703 aa10.13□□□□□ -0.79
UBE3D-202ENST00000369746 BICRAQ9NZM4 1560 aa10.11□□□□□ -0.79
UBE3D-202ENST00000369746 CUX2O14529 1486 aa10.11□□□□□ -0.79
UBE3D-202ENST00000369746 DCAF1Q9Y4B6 1507 aa10.07□□□□□ -0.8
UBE3D-202ENST00000369746 SLC24A1O60721 1099 aa10.03□□□□□ -0.8
UBE3D-202ENST00000369746 CC2D2AQ9P2K1 1620 aa9.96□□□□□ -0.82
UBE3D-202ENST00000369746 CECR2Q9BXF3 1484 aa9.95□□□□□ -0.82
UBE3D-202ENST00000369746 EIF4G1Q04637 1599 aaKnown RBP9.89□□□□□ -0.83
UBE3D-202ENST00000369746 ZCCHC6Q5VYS8 1495 aaKnown RBP9.61□□□□□ -0.87
UBE3D-202ENST00000369746 PABPN1Q86U42 306 aaKnown RBP eCLIP9.6□□□□□ -0.87
UBE3D-202ENST00000369746 NCAPD3P42695 1498 aa9.58□□□□□ -0.88
UBE3D-202ENST00000369746 HMGXB3Q12766 1538 aa9.58□□□□□ -0.88
UBE3D-202ENST00000369746 THOC2Q8NI27 1593 aaKnown RBP9.52□□□□□ -0.89
UBE3D-202ENST00000369746 SMARCA2P51531 1590 aa9.5□□□□□ -0.89
UBE3D-202ENST00000369746 LAMC3Q9Y6N6 1575 aa9.5□□□□□ -0.89
UBE3D-202ENST00000369746 PEG3Q9GZU2 1588 aa9.44□□□□□ -0.9
UBE3D-202ENST00000369746 ERCC6Q03468 1493 aa9.44□□□□□ -0.9
UBE3D-202ENST00000369746 SCRIBQ14160 1630 aa9.41□□□□□ -0.9
UBE3D-202ENST00000369746 WDR62O43379 1518 aa9.35□□□□□ -0.91
UBE3D-202ENST00000369746 PDS5BQ9NTI5 1447 aa9.31□□□□□ -0.92
UBE3D-202ENST00000369746 BAZ1AQ9NRL2 1556 aaPredicted RBP9.29□□□□□ -0.92
UBE3D-202ENST00000369746 ATAD2BQ9ULI0 1458 aa9.28□□□□□ -0.92
UBE3D-202ENST00000369746 MRC2Q9UBG0 1479 aa9.25□□□□□ -0.93
UBE3D-202ENST00000369746 SMARCA4P51532 1647 aa9.2□□□□□ -0.94
UBE3D-202ENST00000369746 WDR97A6NE52 1622 aa9.2□□□□□ -0.94
UBE3D-202ENST00000369746 EHMT2Q96KQ7 1210 aa9.18□□□□□ -0.94
UBE3D-202ENST00000369746 KIF21AQ7Z4S6 1674 aa9.16□□□□□ -0.94
UBE3D-202ENST00000369746 RIMBP3CA6NJZ7 1639 aa9.14□□□□□ -0.95
UBE3D-202ENST00000369746 RIMBP3BA6NNM3 1639 aa9.14□□□□□ -0.95
UBE3D-202ENST00000369746 RIMBP3Q9UFD9 1639 aa9.14□□□□□ -0.95
UBE3D-202ENST00000369746 RSF1Q96T23 1441 aaPredicted RBP9.14□□□□□ -0.95
UBE3D-202ENST00000369746 DAXXQ9UER7 740 aaPredicted RBP9.13□□□□□ -0.95
UBE3D-202ENST00000369746 BAZ1BQ9UIG0 1483 aaKnown RBP9.11□□□□□ -0.95
UBE3D-202ENST00000369746 PLPPR3Q6T4P5 718 aa9.1□□□□□ -0.95
UBE3D-202ENST00000369746 OSCARQ8IYS5 282 aa9.1□□□□□ -0.95
UBE3D-202ENST00000369746 PRDM2Q13029 1718 aa9.08□□□□□ -0.96
UBE3D-202ENST00000369746 CADPSQ9ULU8 1353 aa9.07□□□□□ -0.96
UBE3D-202ENST00000369746 PRKCSHP14314 528 aaPredicted RBP9.07□□□□□ -0.96
UBE3D-202ENST00000369746 ARHGEF11O15085 1522 aa9.04□□□□□ -0.96
UBE3D-202ENST00000369746 ABCC8Q09428 1581 aa9.04□□□□□ -0.96
UBE3D-202ENST00000369746 DCAF8L2P0C7V8 631 aa9.03□□□□□ -0.96
UBE3D-202ENST00000369746 CEP164Q9UPV0 1460 aa9.02□□□□□ -0.96
UBE3D-202ENST00000369746 NESP48681 1621 aa9.02□□□□□ -0.97
UBE3D-202ENST00000369746 IFT140Q96RY7 1462 aa9.01□□□□□ -0.97
UBE3D-202ENST00000369746 TRIM41Q8WV44 630 aa9.01□□□□□ -0.97
UBE3D-202ENST00000369746 PELP1Q8IZL8 1130 aaKnown RBP8.98□□□□□ -0.97
UBE3D-202ENST00000369746 MYT1Q01538 1121 aa8.96□□□□□ -0.97
UBE3D-202ENST00000369746 RTN4Q9NQC3 1192 aaKnown RBP8.96□□□□□ -0.97
UBE3D-202ENST00000369746 CFTRP13569 1480 aa8.95□□□□□ -0.98
UBE3D-202ENST00000369746 APLP2Q06481 763 aa8.91□□□□□ -0.98
UBE3D-202ENST00000369746 CLASP1Q7Z460 1538 aa8.9□□□□□ -0.98
UBE3D-202ENST00000369746 FANCD2Q9BXW9 1451 aa8.89□□□□□ -0.99
UBE3D-202ENST00000369746 ARAP1Q96P48 1450 aa8.89□□□□□ -0.99
UBE3D-202ENST00000369746 TTBK1Q5TCY1 1321 aaPredicted RBP8.88□□□□□ -0.99
UBE3D-202ENST00000369746 AEBP2Q6ZN18 517 aaPredicted RBP8.86□□□□□ -0.99
UBE3D-202ENST00000369746 NCBP3Q53F19 620 aaKnown RBP8.84□□□□□ -0.99
UBE3D-202ENST00000369746 ERCC6L2Q5T890 1561 aa8.84□□□□□ -0.99
UBE3D-202ENST00000369746 SYNJ1O43426 1573 aa8.83□□□□□ -1
UBE3D-202ENST00000369746 URB2Q14146 1524 aaKnown RBP8.83□□□□□ -1
UBE3D-202ENST00000369746 EIF4G3O43432 1585 aaKnown RBP8.8□□□□□ -1
UBE3D-202ENST00000369746 DNMBPQ6XZF7 1577 aa8.79□□□□□ -1
UBE3D-202ENST00000369746 CHD1O14646 1710 aa8.79□□□□□ -1
UBE3D-202ENST00000369746 ERICH6Q7L0X2 663 aa8.79□□□□□ -1
UBE3D-202ENST00000369746 MAGI1Q96QZ7 1491 aaPredicted RBP8.78□□□□□ -1
UBE3D-202ENST00000369746 TARBP1Q13395 1621 aaKnown RBP8.78□□□□□ -1
UBE3D-202ENST00000369746 TOP2AP11388 1531 aaKnown RBP8.75□□□□□ -1.01
UBE3D-202ENST00000369746 MROH2BQ7Z745 1585 aa8.74□□□□□ -1.01
UBE3D-202ENST00000369746 CHIC1Q5VXU3 224 aa8.74□□□□□ -1.01
UBE3D-202ENST00000369746 POTEDQ86YR6 584 aa8.71□□□□□ -1.01
UBE3D-202ENST00000369746 TOPBP1Q92547 1522 aa8.71□□□□□ -1.02
UBE3D-202ENST00000369746 SHROOM2Q13796 1616 aa8.69□□□□□ -1.02
UBE3D-202ENST00000369746 MAPKBP1O60336 1514 aa8.68□□□□□ -1.02
UBE3D-202ENST00000369746 SYNJ2O15056 1496 aa8.65□□□□□ -1.02
UBE3D-202ENST00000369746 KIF13AQ9H1H9 1805 aa8.63□□□□□ -1.03
UBE3D-202ENST00000369746 ZNF608Q9ULD9 1512 aaPredicted RBP8.61□□□□□ -1.03
UBE3D-202ENST00000369746 GRIN2BQ13224 1484 aa8.61□□□□□ -1.03
UBE3D-202ENST00000369746 GAPVD1Q14C86 1478 aa8.6□□□□□ -1.03
UBE3D-202ENST00000369746 TIMELESSQ9UNS1 1208 aa8.6□□□□□ -1.03
UBE3D-202ENST00000369746 GLI2P10070 1586 aa8.6□□□□□ -1.03
UBE3D-202ENST00000369746 ABCC10Q5T3U5 1492 aa8.57□□□□□ -1.04
UBE3D-202ENST00000369746 TOP2BQ02880 1626 aa8.56□□□□□ -1.04
UBE3D-202ENST00000369746 TRHP20396 242 aaPredicted RBP8.56□□□□□ -1.04
UBE3D-202ENST00000369746 NUP160Q12769 1436 aa8.55□□□□□ -1.04
UBE3D-202ENST00000369746 KCNA4P22459 653 aa8.55□□□□□ -1.04
UBE3D-202ENST00000369746 CYB5RLQ6IPT4 315 aa8.55□□□□□ -1.04
UBE3D-202ENST00000369746 WIZO95785 1651 aa8.54□□□□□ -1.04
UBE3D-202ENST00000369746 PBRM1Q86U86 1689 aa8.54□□□□□ -1.04
UBE3D-202ENST00000369746 POLA1P09884 1462 aaPredicted RBP8.53□□□□□ -1.04
UBE3D-202ENST00000369746 AMER1Q5JTC6 1135 aaPredicted RBP8.53□□□□□ -1.04
UBE3D-202ENST00000369746 DIP2BQ9P265 1576 aa8.53□□□□□ -1.04
UBE3D-202ENST00000369746 ABCA5Q8WWZ7 1642 aa8.52□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms